Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12064 Trifolium pratense HOM05D004718 ORTHO05D005838 8.9e-78 293.5 145 100.0
Medtr1g010040 Medicago truncatula HOM05D004718 ORTHO05D005838 3.4e-53 211.8 165 69.1
Ca_12884_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 1.4e-51 206.5 165 67.3
Psat6g031760 Pisum sativum HOM05D004718 ORTHO05D005838 2.1e-50 202.6 165 66.1
Lj5g0017014 Lotus japonicus HOM05D004718 ORTHO05D005838 1.9e-48 196.1 164 65.2
Glyma.04G074300 Glycine max HOM05D004718 ORTHO05D005838 6.9e-46 187.6 164 62.8
Glyma.06G075500 Glycine max HOM05D004718 ORTHO05D005838 3.4e-45 185.3 164 61.6
arahy.Tifrunner.gnm1.ann1.7TNR6F Arachis hypogaea HOM05D004718 ORTHO05D005838 5.8e-45 184.5 164 62.2
arahy.Tifrunner.gnm1.ann1.N8XBBJ Arachis hypogaea HOM05D004718 ORTHO05D005838 5.8e-45 184.5 164 62.2
VMungo1309G0968 Vigna mungo HOM05D004718 ORTHO05D005838 5.8e-45 184.5 165 60.6
Lalb_Chr14g0362131 Lupinus albus HOM05D004718 ORTHO05D005838 7.6e-45 184.1 167 60.5
Ca_15681_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 9.9e-45 183.7 161 61.5
TPR.G12432 Trifolium pratense HOM05D004718 ORTHO05D005838 2.2e-44 182.6 161 61.5
Phvul.009G100000 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 3.8e-44 181.8 164 59.8
TPR.G35198 Trifolium pratense HOM05D004718 ORTHO05D005838 4.9e-44 181.4 112 80.4
QL12p024639 Quercus lobata HOM05D004718 ORTHO05D005838 1.1e-43 180.3 164 59.1
Medtr3g108660 Medicago truncatula HOM05D004718 ORTHO05D005838 3.2e-43 178.7 162 59.9
VMungo0647G1764 Vigna mungo HOM05D004718 ORTHO05D005838 3.2e-43 178.7 164 60.4
GSVIVG01035602001 Vitis vinifera HOM05D004718 ORTHO05D005838 3.2e-43 178.7 170 58.8
Lalb_Chr08g0243651 Lupinus albus HOM05D004718 ORTHO05D005838 4.2e-43 178.3 168 57.7
Glyma.14G132500 Glycine max HOM05D004718 ORTHO05D005838 5.4e-43 177.9 164 61.0
Glyma.17G201000 Glycine max HOM05D004718 ORTHO05D005838 5.4e-43 177.9 164 61.0
Psat5g025880 Pisum sativum HOM05D004718 ORTHO05D005838 1.2e-42 176.8 161 59.6
Sabra02G0063900 Salix brachista HOM05D004718 ORTHO05D005838 1.2e-42 176.8 170 57.1
CANSAT25G2838 Cannabis sativa HOM05D004718 ORTHO05D005838 1.6e-42 176.4 158 58.9
CSS0012298 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 2.1e-42 176.0 171 56.7
CSS0022336 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 2.1e-42 176.0 171 56.7
Ciclev10007306m.g Citrus clementina HOM05D004718 ORTHO05D005838 2.1e-42 176.0 165 58.2
Phvul.001G057700 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 2.1e-42 176.0 164 59.8
Gohir.D13G185401 Gossypium hirsutum HOM05D004718 ORTHO05D005838 3.5e-42 175.3 165 58.2
Gorai.013G211400 Gossypium raimondii HOM05D004718 ORTHO05D005838 3.5e-42 175.3 165 58.2
Thecc.09G001900 Theobroma cacao HOM05D004718 ORTHO05D005838 3.5e-42 175.3 164 58.5
Manes.18G079200 Manihot esculenta HOM05D004718 ORTHO05D005838 4.6e-42 174.9 161 59.6
Duzib168G2024 Durio zibethinus HOM05D004718 ORTHO05D005838 6.0e-42 174.5 164 58.5
Cpa.g.sc42.63 Carica papaya HOM05D004718 ORTHO05D005838 7.8e-42 174.1 165 57.0
COL.COLO4_18636 Corchorus olitorius HOM05D004718 ORTHO05D005838 7.8e-42 174.1 162 59.3
Gohir.A13G181900 Gossypium hirsutum HOM05D004718 ORTHO05D005838 7.8e-42 174.1 165 57.6
Potri.002G081600 Populus trichocarpa HOM05D004718 ORTHO05D005838 7.8e-42 174.1 164 58.5
MD08G1133600 Malus domestica HOM05D004718 ORTHO05D005838 1.7e-41 172.9 164 56.7
MD15G1110500 Malus domestica HOM05D004718 ORTHO05D005838 1.7e-41 172.9 164 57.3
CiPaw.07G215000 Carya illinoinensis HOM05D004718 ORTHO05D005838 2.3e-41 172.6 162 58.0
CsaV3_2G031540 Cucumis sativus L. HOM05D004718 ORTHO05D005838 3.0e-41 172.2 168 57.1
RcHm_v2.0_Chr6g0312261 Rosa chinensis HOM05D004718 ORTHO05D005838 3.0e-41 172.2 164 58.5
FvH4_2g30650 Fragaria vesca HOM05D004718 ORTHO05D005838 6.6e-41 171.0 170 55.3
FAN20G1074 Fragaria x ananassa HOM05D003231 ORTHO05D005838 6.6e-41 171.0 170 55.3
Atru.chr12.843 Acer truncatum HOM05D004718 ORTHO05D005838 8.7e-41 170.6 165 57.0
MELO3C011203.2 Cucumis melo HOM05D004718 ORTHO05D005838 8.7e-41 170.6 168 56.5
FAN27G1892 Fragaria x ananassa HOM05D004718 ORTHO05D005838 1.5e-40 169.9 170 54.7
Nn8g40158 Nelumbo nucifera HOM05D004718 ORTHO05D005838 3.3e-40 168.7 165 56.4
Actinidia03322 Actinidia chinensis HOM05D004718 ORTHO05D005838 9.6e-40 167.2 164 56.7
AUR62028027 Chenopodium quinoa HOM05D004718 ORTHO05D005838 9.6e-40 167.2 188 51.1
Rhsim04G0220700 Rhododendron simsii HOM05D004718 ORTHO05D005838 9.6e-40 167.2 164 56.1
Hma1.2p1_0147F.1_g065850 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 1.3e-39 166.8 160 56.9
Potri.005G179500 Populus trichocarpa HOM05D004718 ORTHO05D005838 1.3e-39 166.8 167 56.3
Eucgr.E04341 Eucalyptus grandis HOM05D004718 ORTHO05D005838 2.1e-39 166.0 161 55.9
ClCG08G012790 Citrullus lanatus HOM05D004718 ORTHO05D005838 2.8e-39 165.6 168 54.8
Cc07_g17410 Coffea canephora HOM05D004718 ORTHO05D005838 2.8e-39 165.6 163 55.2
Prupe.1G462800 Prunus persica HOM05D004718 ORTHO05D005838 3.6e-39 165.2 161 57.1
Sed0011780 Sechium edule HOM05D004718 ORTHO05D005838 3.6e-39 165.2 173 53.8
TAR624G0199 Trochodendron aralioides HOM05D004718 ORTHO05D005838 3.6e-39 165.2 164 55.5
AUR62020697 Chenopodium quinoa HOM05D004718 ORTHO05D005838 4.8e-39 164.9 162 55.6
Haze_21689 Corylus avellana HOM05D004718 ORTHO05D005838 8.1e-39 164.1 180 52.8
Migut.H01115 Erythranthe guttata HOM05D004718 ORTHO05D005838 8.1e-39 164.1 177 51.4
Actinidia25724 Actinidia chinensis HOM05D004718 ORTHO05D005838 1.4e-38 163.3 176 52.8
Sed0007031 Sechium edule HOM05D004718 ORTHO05D005838 1.8e-38 162.9 168 54.2
PGR142G1098 Punica granatum HOM05D004718 ORTHO05D005838 2.4e-38 162.5 164 54.3
TWI32G0049 Tripterygium wilfordii HOM05D004718 ORTHO05D005838 3.1e-38 162.2 162 53.7
Ah.11g044230 Amaranthus hybridus HOM05D004718 ORTHO05D005838 1.2e-37 160.2 166 54.2
Dinv09445 Davidia involucrata HOM05D004718 ORTHO05D005838 2.6e-37 159.1 171 53.2
SGA_v2.0_scaffold76G25169 Striga asiatica HOM05D004718 ORTHO05D005838 2.6e-37 159.1 165 52.7
Sc06g0001390 Simmondsia chinensis HOM05D004718 ORTHO05D005838 3.4e-37 158.7 166 54.2
THA.LOC104799000 Tarenaya hassleriana HOM05D004718 ORTHO05D005838 3.4e-37 158.7 178 52.2
HPP92_023162 Vanilla planifolia HOM05D004718 ORTHO05D005838 4.5e-37 158.3 162 51.2
A06p28290 Brassica napus HOM05D004718 ORTHO05D005838 5.8e-37 157.9 165 54.5
Lj7A755G38 Lonicera japonica HOM05D004718 ORTHO05D005838 5.8e-37 157.9 160 55.0
Nitab4.5_0000004g0240 Nicotiana tabacum HOM05D004718 ORTHO05D005838 5.8e-37 157.9 164 52.4
CARHR158620 Cardamine hirsuta HOM05D004718 ORTHO05D005838 7.6e-37 157.5 168 53.0
PGSC0003DMG401018450 Solanum tuberosum HOM05D004718 ORTHO05D005838 7.6e-37 157.5 164 53.0
CAN.G30.25 Capsicum annuum HOM05D004718 ORTHO05D005838 9.9e-37 157.1 176 50.6
Hund19371 Selenicereus undatus HOM05D004718 ORTHO05D005838 9.9e-37 157.1 162 53.7
BraA06t25772Z Brassica rapa HOM05D004718 ORTHO05D005838 1.3e-36 156.8 165 53.9
Oeu047653.1 Olea europaea HOM05D004718 ORTHO05D005838 1.3e-36 156.8 165 53.9
Sopen03g021200 Solanum pennellii HOM05D004718 ORTHO05D005838 1.3e-36 156.8 165 51.5
Sp5g12510 Schrenkiella parvula HOM05D004718 ORTHO05D005838 1.7e-36 156.4 178 50.0
Solyc03g078390.3 Solanum lycopersicum HOM05D004718 ORTHO05D005838 1.7e-36 156.4 164 51.8
A06p18130 Brassica napus HOM05D004718 ORTHO05D005838 2.9e-36 155.6 178 49.4
BraA06t24901Z Brassica rapa HOM05D004718 ORTHO05D005838 2.9e-36 155.6 178 49.4
DCAR_000697 Daucus carota HOM05D004718 ORTHO05D005838 2.9e-36 155.6 161 52.8
BcaB01g00691 Brassica carinata HOM05D004718 ORTHO05D005838 3.8e-36 155.2 178 49.4
AT3G49600 Arabidopsis thaliana HOM05D004718 ORTHO05D005838 4.9e-36 154.8 175 52.6
Peaxi162Scf00583g00537 Petunia axillaris HOM05D004718 ORTHO05D005838 4.9e-36 154.8 164 51.8
BcaC07g39424 Brassica carinata HOM05D004718 ORTHO05D005838 6.4e-36 154.5 178 49.4
C08p24600 Brassica napus HOM05D004718 ORTHO05D005838 6.4e-36 154.5 178 49.4
BolC8t50076H Brassica oleracea HOM05D004718 ORTHO05D005838 6.4e-36 154.5 178 49.4
Carub.0005s1593 Capsella rubella HOM05D004718 ORTHO05D005838 6.4e-36 154.5 165 53.9
Thhalv10010085m.g Eutrema salsugineum HOM05D004718 ORTHO05D005838 6.4e-36 154.5 165 52.7
Aa31LG4G18090 Aethionema arabicum HOM05D004718 ORTHO05D005838 8.4e-36 154.1 169 54.4
EL10Ac2g03649 Beta vulgaris HOM05D004718 ORTHO05D005838 8.4e-36 154.1 175 49.7
Nitab4.5_0000964g0050 Nicotiana tabacum HOM05D004718 ORTHO05D005838 8.4e-36 154.1 164 51.2
MBI07_g41265_MAGBIO Magnolia biondii HOM05D004718 ORTHO05D005838 1.1e-35 153.7 167 51.5
Aqoxy7G00911 Aquilegia oxysepala HOM05D004718 ORTHO05D005838 1.4e-35 153.3 161 53.4
PSO421G0298 Papaver somniferum HOM05D004718 ORTHO05D005838 1.4e-35 153.3 161 48.4
Lsat_1_v5_gn_5_59280 Lactuca sativa HOM05D004718 ORTHO05D005838 1.9e-35 152.9 151 53.0
HanXRQChr03g0082331 Helianthus annuus HOM05D004718 ORTHO05D005838 2.4e-35 152.5 171 48.5
MSTRG.2684 Avicennia marina HOM05D004718 ORTHO05D005838 4.2e-35 151.8 165 49.7
BcaB02g09597 Brassica carinata HOM05D004718 ORTHO05D005838 5.4e-35 151.4 162 53.7
unitig_699.g19717 Utricularia gibba HOM05D004718 ORTHO05D005838 9.3e-35 150.6 170 48.2
Zm00001eb008340 Zea mays HOM05D004718 ORTHO05D005838 3.0e-33 145.6 160 48.8
ATR0006G074 Amborella trichopoda HOM05D004718 ORTHO05D005838 3.9e-33 145.2 160 49.4
Zm00001eb310400 Zea mays HOM05D004718 ORTHO05D005838 3.9e-33 145.2 166 47.6
ECA240G2491 Erigeron canadensis HOM05D004718 ORTHO05D005838 1.5e-32 143.3 161 49.7
PSO063G2513 Papaver somniferum HOM05D004718 ORTHO05D005838 1.5e-32 143.3 161 47.8
PSO017G4020 Papaver somniferum HOM05D004718 ORTHO05D005838 1.9e-32 142.9 161 49.7
SEGI_37293 Sequoiadendron giganteum HOM05D004718 ORTHO05D005838 1.9e-32 142.9 162 50.6
AL8G22480 Arabidopsis lyrata HOM05D004718 ORTHO05D005838 1.8e-30 136.3 127 59.8
Mapoly0015s0043 Marchantia polymorpha HOM05D004718 ORTHO05D005838 2.6e-29 132.5 173 44.5
vmacro12747 Vaccinium macrocarpon HOM05D004718 ORTHO05D005838 9.9e-29 130.6 240 37.5
CDE06G1884 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 2.2e-28 129.4 160 46.2
AL5G29440 Arabidopsis lyrata HOM05D004718 ORTHO05D005838 4.9e-28 128.3 153 51.6
Pp3c16_5610 Physcomitrium patens HOM05D004718 ORTHO05D005838 1.1e-27 127.1 164 45.7
CDE04G3074 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 1.4e-27 126.7 160 45.6
SMO367G0705 Selaginella moellendorffii HOM05D004718 ORTHO05D005838 8.7e-25 117.5 160 44.4
CBR_g19585 Chara braunii HOM05D004718 ORTHO05D005838 1.5e-24 116.7 196 38.3
C03p65460 Brassica napus HOM05D004718 ORTHO05D005838 1.3e-15 87.0 75 60.0
BcaC01g02422 Brassica carinata HOM05D004718 ORTHO05D005838 2.4e-14 82.8 67 62.7
TPR.G36582 Trifolium pratense HOM05D004718 ORTHO05D005838 2.2e-12 76.3 67 52.2
Cre01.g030450 Chlamydomonas reinhardtii HOM05D004718 ORTHO05D005838 5.5e-11 71.6 55 52.7
PRCOL_00003856 Prasinoderma coloniale HOM05D004718 ORTHO05D005838 3.0e-09 65.9 199 26.6
Solyc10g047480.1 Solanum lycopersicum HOM05D000344 ORTHO05D003292 2.8e-07 59.3 67 43.3
Sopen10g017710 Solanum pennellii HOM05D000344 ORTHO05D003292 2.8e-07 59.3 67 43.3
Aqoxy3G00079 Aquilegia oxysepala HOM05D004014 ORTHO05D031250 6.3e-07 58.2 44 63.6
Aqoxy3G00091 Aquilegia oxysepala HOM05D004014 ORTHO05D031250 8.2e-07 57.8 117 40.2
Haze_26153 Corylus avellana HOM05D002714 ORTHO05D003085 1.4e-06 57.0 103 32.0
Haze_26221 Corylus avellana HOM05D000344 ORTHO05D000934 1.4e-06 57.0 101 31.7
Gohir.A10G062050 Gossypium hirsutum HOM05D004014 ORTHO05D005890 1.4e-06 57.0 63 52.4
Haze_26849 Corylus avellana HOM05D000279 ORTHO05D000957 1.8e-06 56.6 141 26.2
SMO307G0086 Selaginella moellendorffii HOM05D004014 ORTHO05D005890 3.1e-06 55.8 56 51.8
PGSC0003DMG400039510 Solanum tuberosum HOM05D000344 ORTHO05D003292 4.1e-06 55.5 67 41.8
PGSC0003DMG400042692 Solanum tuberosum HOM05D000344 ORTHO05D003292 4.1e-06 55.5 67 40.3
HPP92_005519 Vanilla planifolia HOM05D004014 ORTHO05D005890 4.1e-06 55.5 72 40.3
TPR.G21961 Trifolium pratense HOM05D004718 ORTHO05D005838 5.3e-06 55.1 28 92.9
Gohir.A09G080500 Gossypium hirsutum HOM05D004014 ORTHO05D005890 9.1e-06 54.3 49 57.1
Gohir.D09G080501 Gossypium hirsutum HOM05D004014 ORTHO05D005890 9.1e-06 54.3 49 57.1
Gorai.006G096100 Gossypium raimondii HOM05D004014 ORTHO05D005890 9.1e-06 54.3 49 57.1
Manes.11G028700 Manihot esculenta HOM05D004014 ORTHO05D005890 9.1e-06 54.3 38 65.8
Sed0015765 Sechium edule HOM05D004014 ORTHO05D005890 9.1e-06 54.3 49 53.1


User provided reference genes

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