Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 0.0e+00 1271.9 654 100.0
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 0.0e+00 1181.0 654 92.4
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 0.0e+00 1093.2 603 92.0
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 0.0e+00 1087.8 652 85.6
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 0.0e+00 1086.6 654 85.3
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 0.0e+00 1075.1 653 85.0
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 2.3e-306 1055.0 654 83.6
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 1.9e-300 1035.4 650 82.3
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 3.1e-287 991.5 654 81.2
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 3.5e-283 978.0 693 74.5
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 3.5e-283 978.0 693 74.7
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 7.9e-267 923.7 655 71.9
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 7.9e-267 923.7 655 72.7
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 3.3e-265 918.3 655 72.2
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 4.1e-263 911.4 655 71.8
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 1.2e-262 909.8 655 70.8
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 4.5e-262 907.9 655 71.3
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 6.5e-261 904.0 657 71.4
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 8.5e-261 903.7 655 71.0
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 8.5e-261 903.7 658 70.1
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 3.6e-259 898.3 653 71.1
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 3.6e-259 898.3 647 71.1
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 3.0e-258 895.2 655 71.6
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 5.1e-258 894.4 660 69.8
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 6.7e-258 894.0 658 69.1
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 1.1e-257 893.3 654 71.3
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 7.4e-257 890.6 657 70.6
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 1.6e-256 889.4 658 69.0
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 2.2e-256 889.0 655 70.1
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 2.2e-256 889.0 654 69.3
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 6.3e-256 887.5 659 68.9
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 8.2e-256 887.1 655 70.7
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.8e-255 885.9 653 70.6
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 2.4e-255 885.6 658 69.1
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 4.1e-255 884.8 660 68.8
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.5e-254 882.9 657 70.0
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 1.5e-254 882.9 656 68.4
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 2.0e-254 882.5 654 69.3
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 4.5e-254 881.3 659 68.6
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 5.9e-254 880.9 657 68.6
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 1.3e-253 879.8 660 68.3
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 1.1e-252 876.7 654 69.6
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 1.4e-252 876.3 658 69.5
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 1.4e-252 876.3 654 68.8
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 5.5e-252 874.4 655 69.8
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 2.1e-251 872.5 655 70.1
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 5.1e-250 867.8 645 69.1
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 1.5e-249 866.3 655 68.4
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 1.5e-249 866.3 657 68.8
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 2.8e-248 862.1 660 67.7
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 6.9e-247 857.4 641 69.1
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 1.2e-246 856.7 655 67.3
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 1.2e-246 856.7 662 67.1
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 4.5e-246 854.7 655 67.3
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 5.9e-246 854.4 691 64.7
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 7.7e-246 854.0 658 67.3
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 1.3e-245 853.2 661 67.6
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 2.2e-245 852.4 658 68.4
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 5.0e-245 851.3 649 68.0
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 6.5e-245 850.9 643 68.6
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 8.5e-245 850.5 656 67.8
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 7.2e-244 847.4 657 67.4
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 3.6e-243 845.1 656 66.9
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 4.7e-243 844.7 658 67.5
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 1.4e-242 843.2 646 66.9
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 4.4e-241 838.2 663 66.4
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.4e-239 833.2 656 65.5
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 4.1e-239 831.6 655 67.5
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 1.3e-237 826.6 658 65.8
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.1e-236 823.5 656 64.6
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 3.2e-236 822.0 645 65.6
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 7.2e-236 820.8 609 69.3
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 9.4e-236 820.5 658 64.6
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 2.0e-233 812.8 724 61.9
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 1.8e-231 806.2 644 65.8
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 1.0e-229 800.4 689 63.1
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 2.2e-229 799.3 596 70.5
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 2.9e-229 798.9 645 65.3
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 4.0e-226 788.5 584 70.0
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 6.3e-224 781.2 670 61.0
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 2.9e-221 772.3 616 65.4
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 2.5e-220 769.2 660 63.3
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 1.4e-218 763.5 657 64.4
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 4.1e-215 751.9 599 67.1
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 1.6e-214 750.0 683 59.0
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 1.6e-211 740.0 658 60.2
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 8.0e-211 737.6 865 50.2
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 1.8e-202 709.9 685 57.7
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 1.5e-201 706.8 657 56.8
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 7.3e-188 661.4 847 47.7
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 2.6e-185 652.9 570 60.4
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 3.4e-185 652.5 669 54.1
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 7.8e-182 641.3 507 64.9
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 5.2e-178 628.6 477 69.2
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 2.7e-166 589.7 476 64.7
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 6.0e-166 588.6 490 63.7
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 1.9e-164 583.6 580 55.2
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 7.4e-164 581.6 601 54.2
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.5e-140 503.4 436 60.3
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 4.8e-123 446.0 435 56.1
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 2.5e-103 380.6 281 74.7
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.2e-102 378.3 345 58.6
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 1.6e-102 377.9 361 55.4
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 7.3e-79 299.3 319 51.4
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 9.5e-79 298.9 431 42.9
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 4.0e-77 293.5 237 60.8
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 4.6e-73 280.0 199 71.4
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 6.2e-70 269.6 203 67.5
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.4e-69 268.5 177 72.3
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 3.4e-60 237.3 392 40.6
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 4.9e-59 233.4 168 66.7
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 9.3e-58 229.2 142 83.8
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 3.9e-56 223.8 250 55.6
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 5.8e-44 183.3 399 34.1
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 3.2e-42 177.6 307 43.0
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 4.2e-42 177.2 137 65.7
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 4.0e-37 160.6 167 53.3
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 1.7e-35 155.2 147 57.1
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 1.7e-35 155.2 89 92.1
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 6.0e-33 146.7 155 56.1
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 1.8e-32 145.2 97 74.2
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 2.3e-32 144.8 89 75.3
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 1.1e-31 142.5 94 74.5
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 1.6e-30 138.7 86 76.7
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 8.2e-30 136.3 92 70.7
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 2.0e-28 131.7 90 65.6
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 4.5e-28 130.6 79 78.5
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 2.9e-27 127.9 96 63.5
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 6.1e-25 120.2 161 41.6
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 1.0e-24 119.4 83 72.3
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 1.3e-22 112.5 65 87.7
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 3.7e-22 110.9 169 40.8
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 4.5e-20 104.0 148 48.6
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 5.9e-20 103.6 179 37.4
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 3.8e-19 100.9 90 61.1
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 2.7e-17 94.7 55 85.5
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 1.8e-16 92.0 71 63.4
Glyma.16G121250 Glycine max HOM05D001598 ORTHO05D046738 1.7e-14 85.5 72 69.4
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 8.2e-14 83.2 61 70.5
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-13 81.3 72 58.3
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 5.3e-13 80.5 50 76.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 5.3e-13 80.5 50 76.0
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 2.9e-11 74.7 60 61.7
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 9.7e-07 59.7 65 43.1


User provided reference genes

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