Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1164 Trifolium pratense HOM05D006512 ORTHO05D008027 0.0e+00 1446.8 920 100.0
Medtr5g093560 Medicago truncatula HOM05D006512 ORTHO05D008027 0.0e+00 1104.4 938 82.1
Glyma.02G293200 Glycine max HOM05D006512 ORTHO05D008027 2.0e-284 982.6 930 74.3
Glyma.14G021200 Glycine max HOM05D006512 ORTHO05D008027 4.8e-278 961.4 927 70.6
VMungo0647G0540 Vigna mungo HOM05D006512 ORTHO05D008027 1.0e-264 917.1 924 67.2
Ca_06341_v3 Cicer arietinum L. HOM05D006512 ORTHO05D008027 1.2e-255 887.1 768 82.0
arahy.Tifrunner.gnm1.ann1.DSL29X Arachis hypogaea HOM05D006512 ORTHO05D008027 7.2e-250 867.8 924 67.9
arahy.Tifrunner.gnm1.ann1.WH2E03 Arachis hypogaea HOM05D006512 ORTHO05D008027 1.2e-249 867.1 701 71.9
Psat2g014000 Pisum sativum HOM05D006512 ORTHO05D008027 3.7e-222 775.8 739 76.9
Phvul.008G270300 Phaseolus vulgaris HOM05D006512 ORTHO05D008027 1.6e-220 770.4 839 68.4
LjContig00272g0012578 Lotus japonicus HOM05D006512 ORTHO05D008027 5.4e-213 745.3 783 71.1
Prupe.4G218000 Prunus persica HOM05D006512 ORTHO05D008027 5.4e-197 692.2 956 58.2
Haze_09710 Corylus avellana HOM05D006512 ORTHO05D008027 2.2e-190 670.2 930 52.7
TWI39G1152 Tripterygium wilfordii HOM05D006512 ORTHO05D008027 3.9e-187 659.4 936 52.8
Duzib213G0172 Durio zibethinus HOM05D006512 ORTHO05D008027 5.3e-184 649.0 950 54.8
CiPaw.12G131800 Carya illinoinensis HOM05D006512 ORTHO05D008027 4.2e-181 639.4 949 53.2
Gohir.D05G372700 Gossypium hirsutum HOM05D006512 ORTHO05D008027 6.7e-179 632.1 946 53.9
FAN11G0896 Fragaria x ananassa HOM05D006512 ORTHO05D008027 5.3e-176 622.5 958 52.4
Thecc.07G032200 Theobroma cacao HOM05D006512 ORTHO05D008027 4.5e-175 619.4 705 54.5
Lalb_Chr17g0348651 Lupinus albus HOM05D006512 ORTHO05D008027 4.2e-173 612.8 751 67.1
Ciclev10007420m.g Citrus clementina HOM05D006512 ORTHO05D008027 6.1e-172 609.0 949 53.8
CSS0043474 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 5.1e-171 605.9 681 53.6
Atru.chr2.3489 Acer truncatum HOM05D006512 ORTHO05D008027 2.8e-169 600.1 945 53.7
FAN21G3399 Fragaria x ananassa HOM05D006512 ORTHO05D008027 9.4e-165 585.1 958 54.3
FAN16G2871 Fragaria x ananassa HOM05D006512 ORTHO05D008027 3.9e-163 579.7 945 54.7
RcHm_v2.0_Chr5g0040811 Rosa chinensis HOM05D006512 ORTHO05D008027 5.7e-162 575.9 959 53.3
Sabra16G0234800 Salix brachista HOM05D006512 ORTHO05D008027 5.0e-158 562.8 994 46.6
FAN25G2516 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.1e-157 561.6 963 51.9
vmacro02216 Vaccinium macrocarpon HOM05D006512 ORTHO05D008027 5.5e-157 559.3 734 49.0
FAN25G1139 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.0e-155 555.1 725 51.2
CANSAT11G0281 Cannabis sativa HOM05D006512 ORTHO05D008027 1.4e-155 554.7 931 50.2
Lj1C877G6 Lonicera japonica HOM05D006512 ORTHO05D008027 6.3e-153 545.8 719 50.1
Cpa.g.sc12.276 Carica papaya HOM05D006512 ORTHO05D008027 5.2e-147 526.2 585 56.9
Actinidia32260 Actinidia chinensis HOM05D006512 ORTHO05D008027 2.4e-144 517.3 709 47.0
TAR626G0449 Trochodendron aralioides HOM05D006512 ORTHO05D008027 7.0e-144 515.8 666 51.1
THA.LOC104811621 Tarenaya hassleriana HOM05D006512 ORTHO05D008027 3.5e-143 513.5 666 49.5
Nitab4.5_0001393g0060 Nicotiana tabacum HOM05D006512 ORTHO05D008027 1.0e-142 511.9 669 49.8
QL08p009135 Quercus lobata HOM05D006512 ORTHO05D008027 8.5e-142 508.8 796 54.6
Oeu024915.1 Olea europaea HOM05D006512 ORTHO05D008027 3.2e-141 506.9 681 49.2
Nn1g07218 Nelumbo nucifera HOM05D006512 ORTHO05D008027 9.4e-141 505.4 786 45.0
COL.COLO4_09692 Corchorus olitorius HOM05D006512 ORTHO05D008027 1.6e-140 504.6 582 53.3
CAN.G492.3 Capsicum annuum HOM05D006512 ORTHO05D008027 2.7e-140 503.8 721 47.7
Ah.06g182620 Amaranthus hybridus HOM05D006512 ORTHO05D008027 1.7e-137 494.6 711 46.6
Hund23227 Selenicereus undatus HOM05D006512 ORTHO05D008027 1.7e-137 494.6 762 45.5
PGR083G0988 Punica granatum HOM05D006512 ORTHO05D008027 3.7e-137 493.4 543 52.7
Nitab4.5_0004829g0090 Nicotiana tabacum HOM05D006512 ORTHO05D008027 1.8e-136 491.1 691 47.6
Aqoxy1G03389_Aqoxy1G03390 Aquilegia oxysepala HOM05D006512 ORTHO05D008027 1.2e-135 488.4 721 45.9
Peaxi162Scf01615g00010 Petunia axillaris HOM05D006512 ORTHO05D008027 1.2e-135 488.4 692 48.6
Sopen10g002210 Solanum pennellii HOM05D006512 ORTHO05D008027 2.0e-135 487.6 722 45.4
PSO541G1419 Papaver somniferum HOM05D006512 ORTHO05D008027 1.9e-133 481.1 684 46.5
Gorai.009G441100 Gossypium raimondii HOM05D006512 ORTHO05D008027 2.5e-133 480.7 800 53.0
AUR62020400 Chenopodium quinoa HOM05D006512 ORTHO05D008027 3.2e-133 480.3 718 45.4
EL10Ac4g07766 Beta vulgaris HOM05D006512 ORTHO05D008027 8.0e-132 475.7 688 45.8
PGSC0003DMG400014387 Solanum tuberosum HOM05D006512 ORTHO05D008027 5.2e-131 473.0 719 45.9
ECA236G0056 Erigeron canadensis HOM05D006512 ORTHO05D008027 2.6e-130 470.7 709 43.7
Duzib170G0430 Durio zibethinus HOM05D006512 ORTHO05D008027 3.4e-130 470.3 776 51.5
AUR62015819 Chenopodium quinoa HOM05D006512 ORTHO05D008027 5.7e-130 469.5 714 44.8
Gohir.A04G013500 Gossypium hirsutum HOM05D006512 ORTHO05D008027 1.3e-129 468.4 550 53.1
Thhalv10015403m.g Eutrema salsugineum HOM05D006512 ORTHO05D008027 1.8e-128 464.5 716 44.0
Carub.0008s1539 Capsella rubella HOM05D006512 ORTHO05D008027 4.1e-128 463.4 708 45.5
AL8G30600 Arabidopsis lyrata HOM05D006512 ORTHO05D008027 1.2e-127 461.8 743 43.3
A02p09890 Brassica napus HOM05D006512 ORTHO05D008027 3.5e-127 460.3 718 46.0
FvH4_3g23160 Fragaria vesca HOM05D006512 ORTHO05D008027 1.0e-126 458.8 817 50.4
Aa31LG5G12080 Aethionema arabicum HOM05D006512 ORTHO05D008027 4.3e-125 453.4 731 43.1
CSS0048002 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 1.2e-124 451.8 522 52.9
Manes.03G133700 Manihot esculenta HOM05D006512 ORTHO05D008027 1.6e-124 451.4 519 54.7
C02p16450 Brassica napus HOM05D006512 ORTHO05D008027 2.1e-124 451.1 672 46.7
BolC2t07744H Brassica oleracea HOM05D006512 ORTHO05D008027 4.0e-123 446.8 672 46.7
BcaC03g14267 Brassica carinata HOM05D006512 ORTHO05D008027 5.2e-123 446.4 671 46.3
Potri.001G356800 Populus trichocarpa HOM05D006512 ORTHO05D008027 8.9e-123 445.7 821 50.7
MBI07_g09094_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 1.2e-122 445.3 757 43.6
BcaB05g22180 Brassica carinata HOM05D006512 ORTHO05D008027 5.7e-122 443.0 708 43.9
Lsat_1_v5_gn_7_111120 Lactuca sativa HOM05D006512 ORTHO05D008027 1.8e-120 438.0 711 42.6
Migut.H01809 Erythranthe guttata HOM05D006512 ORTHO05D008027 5.9e-119 433.0 717 43.7
BraA02t06053Z Brassica rapa HOM05D006512 ORTHO05D008027 8.0e-116 422.5 735 43.1
MD11G1213200 Malus domestica HOM05D006512 ORTHO05D008027 1.0e-115 422.2 750 54.7
Oeu041836.1 Olea europaea HOM05D006512 ORTHO05D008027 4.4e-114 416.8 582 48.1
Eucgr.F00738 Eucalyptus grandis HOM05D006512 ORTHO05D008027 1.9e-112 411.4 514 51.0
DCAR_022584 Daucus carota HOM05D006512 ORTHO05D008027 5.4e-112 409.8 707 41.6
ATR0585G019 Amborella trichopoda HOM05D006512 ORTHO05D008027 3.3e-109 400.6 693 42.6
Sc03g0008470 Simmondsia chinensis HOM05D006512 ORTHO05D008027 2.1e-108 397.9 518 49.6
SGA_v2.0_scaffold172G39010 Striga asiatica HOM05D006512 ORTHO05D008027 2.7e-103 380.9 750 38.8
PSO675G4144 Papaver somniferum HOM05D006512 ORTHO05D008027 2.5e-101 374.4 555 45.2
Solyc10g006260.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 5.2e-99 366.7 572 44.2
unitig_899.g15285 Utricularia gibba HOM05D006512 ORTHO05D008027 4.4e-98 363.6 739 38.2
HPP92_009832 Vanilla planifolia HOM05D006512 ORTHO05D008027 1.4e-96 358.6 728 38.3
Os01g0698100 Oryza sativa ssp. japonica HOM05D006512 ORTHO05D008027 1.6e-92 345.1 747 37.2
HanXRQChr11g0335931 Helianthus annuus HOM05D006512 ORTHO05D008027 1.9e-88 331.6 564 42.7
Dinv40780 Davidia involucrata HOM05D006512 ORTHO05D008027 5.1e-86 323.6 332 58.4
SEGI_25925 Sequoiadendron giganteum HOM05D006512 ORTHO05D008027 2.5e-85 321.2 788 34.8
Sp6g17030 Schrenkiella parvula HOM05D006512 ORTHO05D008027 9.9e-82 309.3 564 39.9
SHI26585 Sapria himalayana HOM05D006512 ORTHO05D008027 1.5e-77 295.4 777 32.2
Actinidia05076 Actinidia chinensis HOM05D006512 ORTHO05D008027 4.0e-75 287.3 349 51.9
CDE04G1000 Ceratophyllum demersum HOM05D006512 ORTHO05D008027 5.5e-72 276.9 619 38.1
GSVIVG01037687001 Vitis vinifera HOM05D006512 ORTHO05D008027 2.1e-71 275.0 380 50.5
Actinidia26683 Actinidia chinensis HOM05D006512 ORTHO05D008027 1.8e-70 271.9 362 47.2
AT5G55100 Arabidopsis thaliana HOM05D006512 ORTHO05D008027 1.2e-63 249.2 522 38.5
Rhsim06G0220200 Rhododendron simsii HOM05D006512 ORTHO05D008027 5.7e-61 240.4 339 45.7
Cc05_g14000 Coffea canephora HOM05D006512 ORTHO05D008027 8.2e-60 236.5 442 40.0
Mapoly0045s0119 Marchantia polymorpha HOM05D006512 ORTHO05D008027 3.2e-56 224.6 715 31.7
MBI07_g37843_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 2.0e-50 205.3 551 33.8
Zm00001eb360910 Zea mays HOM05D006512 ORTHO05D008027 8.5e-41 173.3 523 32.1
Lalb_Chr17g0348641 Lupinus albus HOM05D006512 ORTHO05D008027 1.8e-35 155.6 161 54.0
CARHR268440 Cardamine hirsuta HOM05D006512 ORTHO05D008027 9.1e-35 153.3 149 57.0
Cc05_g14010 Coffea canephora HOM05D006512 ORTHO05D008027 2.6e-34 151.8 148 56.1
QL08p009130 Quercus lobata HOM05D006512 ORTHO05D008027 8.5e-33 146.7 142 55.6
Eucgr.F00737 Eucalyptus grandis HOM05D006512 ORTHO05D008027 2.5e-32 145.2 146 56.2
GSVIVG01037689001 Vitis vinifera HOM05D006512 ORTHO05D008027 9.4e-32 143.3 148 54.1
CANSAT56G4300 Cannabis sativa HOM05D006512 ORTHO05D008027 8.0e-31 140.2 134 61.2
HanXRQChr11g0335921 Helianthus annuus HOM05D006512 ORTHO05D008027 4.4e-29 134.4 145 51.7
MD11G1213100 Malus domestica HOM05D006512 ORTHO05D008027 1.7e-28 132.5 150 48.7
Solyc10g006250.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 5.0e-25 120.9 147 49.0
VMungo0251G0907 Vigna mungo HOM05D001291 ORTHO05D008027 2.2e-20 105.5 176 44.3
CBR_g49368 Chara braunii HOM05D000019 ORTHO05D000048 3.1e-11 75.1 111 37.8
Cre11.g481700 Chlamydomonas reinhardtii HOM05D006512 ORTHO05D008027 3.1e-11 75.1 68 52.9
Nn6g32350 Nelumbo nucifera HOM05D006512 ORTHO05D008027 3.6e-07 61.6 162 36.4
PRCOL_00002654 Prasinoderma coloniale HOM05D002594 ORTHO05D003499 4.0e-06 58.2 92 37.0
C02p33950 Brassica napus HOM05D014849 ORTHO05D016773 5.2e-06 57.8 56 57.1
BolC2t09315H Brassica oleracea HOM05D014849 ORTHO05D016773 5.2e-06 57.8 56 57.1


User provided reference genes

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