Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 2.1e-88 328.9 162 100.0
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 2.5e-81 305.4 160 93.8
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 4.8e-80 301.2 159 93.1
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 4.8e-80 301.2 159 93.1
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 9.9e-78 293.5 160 91.2
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 4.6e-75 284.6 162 85.8
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 3.0e-74 282.0 162 86.4
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 8.1e-72 273.9 162 82.7
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 6.9e-71 270.8 162 80.2
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 9.0e-71 270.4 162 80.2
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 9.0e-71 270.4 162 79.6
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 4.5e-70 268.1 160 82.5
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 1.7e-69 266.2 162 79.0
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 2.7e-67 258.8 160 79.4
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 7.9e-67 257.3 159 76.7
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 8.7e-66 253.8 159 76.7
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 5.6e-65 251.1 159 77.4
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.3e-64 250.0 158 75.9
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 1.3e-64 250.0 159 74.2
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 1.6e-64 249.6 159 76.7
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 6.2e-64 247.7 158 73.4
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 8.1e-64 247.3 158 74.1
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 8.1e-64 247.3 158 74.1
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 1.4e-63 246.5 160 76.9
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.4e-63 246.5 158 74.7
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 1.8e-63 246.1 158 79.7
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.8e-63 246.1 158 74.7
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 1.8e-63 246.1 159 75.5
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 4.0e-63 245.0 158 77.2
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 5.3e-63 244.6 158 73.4
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 6.9e-63 244.2 159 73.6
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 6.9e-63 244.2 160 76.2
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 6.9e-63 244.2 157 75.8
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 6.9e-63 244.2 163 76.7
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 9.0e-63 243.8 159 73.6
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 1.5e-62 243.0 162 75.3
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.5e-62 243.0 158 72.8
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.6e-62 242.3 160 75.6
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 2.6e-62 242.3 158 74.1
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 2.6e-62 242.3 160 75.0
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 2.6e-62 242.3 160 73.8
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.4e-62 241.9 160 75.6
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 5.8e-62 241.1 158 72.2
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 7.6e-62 240.7 159 72.3
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.3e-61 240.0 160 74.4
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 1.7e-61 239.6 160 73.1
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.2e-61 239.2 158 72.2
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 3.8e-61 238.4 161 71.4
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 4.9e-61 238.0 160 72.5
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 6.5e-61 237.7 160 72.5
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 6.5e-61 237.7 160 72.5
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 6.5e-61 237.7 159 73.0
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 8.4e-61 237.3 153 74.5
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 8.4e-61 237.3 160 71.9
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 8.4e-61 237.3 154 74.7
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 1.4e-60 236.5 158 71.5
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 1.4e-60 236.5 161 68.9
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 1.9e-60 236.1 159 72.3
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 3.2e-60 235.3 159 71.7
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 5.5e-60 234.6 159 71.1
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 7.1e-60 234.2 160 72.5
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 7.1e-60 234.2 158 73.4
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 9.3e-60 233.8 159 71.1
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 1.6e-59 233.0 160 73.8
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.6e-59 233.0 157 72.6
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 1.6e-59 233.0 161 70.8
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 1.6e-59 233.0 158 70.3
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 2.1e-59 232.6 161 71.4
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 2.7e-59 232.3 158 72.2
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 3.5e-59 231.9 158 72.2
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 3.5e-59 231.9 159 72.3
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 6.0e-59 231.1 159 69.8
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 7.9e-59 230.7 158 73.4
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 1.8e-58 229.6 160 71.2
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 2.3e-58 229.2 157 71.3
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 3.0e-58 228.8 154 70.8
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 3.0e-58 228.8 159 70.4
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 5.1e-58 228.0 159 71.7
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 8.7e-58 227.3 157 68.8
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.5e-57 226.5 158 72.2
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 1.9e-57 226.1 158 69.6
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 3.3e-57 225.3 144 72.9
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 9.6e-57 223.8 149 75.2
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 1.3e-56 223.4 159 69.8
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 1.3e-56 223.4 158 68.4
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 6.3e-56 221.1 158 69.0
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 4.1e-55 218.4 159 66.7
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 5.3e-55 218.0 159 67.9
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 9.0e-55 217.2 157 68.2
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 1.2e-54 216.9 157 68.2
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.0e-54 216.1 160 64.4
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.0e-54 216.1 160 64.4
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 2.6e-54 215.7 158 67.1
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 5.9e-54 214.5 160 67.5
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 7.6e-54 214.2 161 66.5
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.0e-53 213.8 159 67.9
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 1.3e-53 213.4 142 73.2
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.7e-53 213.0 160 63.8
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 3.8e-53 211.8 159 66.7
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 8.4e-53 210.7 161 67.1
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.4e-52 209.9 154 66.9
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 1.9e-52 209.5 162 66.0
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 1.9e-52 209.5 161 65.8
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 3.2e-52 208.8 160 66.2
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 4.2e-52 208.4 159 66.0
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 4.2e-52 208.4 159 66.0
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 9.3e-52 207.2 164 62.2
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 1.2e-51 206.8 165 63.0
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 2.7e-51 205.7 161 64.0
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 4.6e-51 204.9 164 61.6
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 4.6e-51 204.9 148 67.6
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 7.9e-51 204.1 161 64.0
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 7.9e-51 204.1 161 64.0
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 1.0e-50 203.8 161 64.6
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 1.3e-50 203.4 157 61.1
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 1.8e-50 203.0 160 65.0
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 8.7e-50 200.7 158 65.2
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 8.7e-50 200.7 161 63.4
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 8.7e-50 200.7 161 63.4
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 4.3e-49 198.4 161 62.7
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 9.7e-49 197.2 158 64.6
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 1.4e-47 193.4 158 61.4
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 6.9e-47 191.0 161 62.7
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 1.1e-44 183.7 160 60.6
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 3.2e-44 182.2 157 59.9
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 6.1e-43 177.9 143 62.2
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 2.0e-41 172.9 158 54.4
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 7.4e-41 171.0 107 75.7
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 7.7e-38 161.0 163 50.3
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.1e-36 157.1 145 59.3
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 3.6e-35 152.1 107 68.2
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 6.7e-34 147.9 168 47.6
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 5.7e-33 144.8 119 58.0
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 3.7e-32 142.1 157 52.2
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 8.8e-26 120.9 117 53.8
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 1.7e-24 116.7 181 37.6
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 1.6e-22 110.2 122 52.5
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 2.7e-22 109.4 54 98.1
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 3.6e-19 99.0 73 64.4
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 8.8e-18 94.4 54 81.5
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 4.4e-17 92.0 106 46.2
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.1e-15 87.4 74 59.5
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.1e-15 87.4 151 39.1
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 3.2e-12 75.9 49 69.4
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 1.6e-11 73.6 42 85.7
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 8.0e-11 71.2 41 85.4


User provided reference genes

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