Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 2.1e-133 479.2 262 100.0
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 4.5e-104 381.7 281 74.7
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 8.4e-103 377.5 281 74.0
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 2.7e-101 372.5 281 72.6
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 1.7e-95 353.2 281 68.7
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 3.3e-91 339.0 281 67.6
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 1.1e-89 334.0 281 66.9
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 4.5e-88 328.6 279 64.9
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 1.3e-87 327.0 281 66.2
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 1.3e-79 300.4 287 59.6
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 5.0e-79 298.5 287 59.2
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 1.2e-72 277.3 262 62.6
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 4.7e-69 265.4 285 53.3
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 1.8e-68 263.5 285 55.4
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.8e-68 263.5 285 55.1
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 4.0e-68 262.3 287 53.0
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 6.8e-68 261.5 285 54.0
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 8.8e-68 261.2 285 53.3
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 3.4e-67 259.2 287 52.3
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 3.4e-67 259.2 285 53.0
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 4.4e-67 258.8 285 53.3
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 2.8e-66 256.1 284 50.4
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 8.3e-66 254.6 285 52.6
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 8.3e-66 254.6 285 52.3
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 9.1e-65 251.1 284 50.0
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 1.6e-64 250.4 131 94.7
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 2.0e-64 250.0 284 50.7
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 2.0e-64 250.0 285 50.9
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 2.0e-64 250.0 292 51.4
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 3.5e-64 249.2 284 50.0
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 4.5e-64 248.8 285 51.9
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 4.5e-64 248.8 285 51.9
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 5.9e-64 248.4 284 48.6
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 7.7e-64 248.1 284 49.6
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 1.0e-63 247.7 285 51.6
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 1.0e-63 247.7 285 49.8
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 1.3e-63 247.3 292 49.7
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 1.7e-63 246.9 284 48.9
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 2.9e-63 246.1 284 53.9
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 3.8e-63 245.7 285 50.9
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 5.0e-63 245.4 284 49.3
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 6.5e-63 245.0 285 51.9
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 8.5e-63 244.6 285 49.8
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 1.5e-62 243.8 285 51.2
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 1.5e-62 243.8 285 51.6
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 1.9e-62 243.4 284 48.9
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 2.5e-62 243.0 289 52.2
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 2.5e-62 243.0 285 53.3
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 4.2e-62 242.3 287 51.6
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 7.2e-62 241.5 284 50.7
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 1.6e-61 240.4 284 50.4
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 3.6e-61 239.2 285 49.8
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 3.6e-61 239.2 285 49.8
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 3.6e-61 239.2 290 48.6
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 4.7e-61 238.8 285 49.5
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 4.7e-61 238.8 285 49.5
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 6.1e-61 238.4 285 49.8
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 8.0e-61 238.0 284 50.0
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 1.0e-60 237.7 289 48.8
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.0e-60 237.7 290 48.3
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 3.0e-60 236.1 285 49.8
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 3.0e-60 236.1 283 50.9
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 4.0e-60 235.7 290 47.9
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 6.8e-60 235.0 285 50.2
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 6.8e-60 235.0 285 48.8
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 1.2e-59 234.2 286 51.4
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 1.5e-59 233.8 291 48.5
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 2.0e-59 233.4 284 47.5
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 2.6e-59 233.0 287 48.8
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 4.4e-59 232.3 290 47.6
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 4.4e-59 232.3 285 49.5
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 9.8e-59 231.1 291 48.1
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 2.2e-58 229.9 288 47.9
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 2.2e-58 229.9 294 48.0
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 2.8e-58 229.6 283 48.1
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 2.8e-58 229.6 293 48.5
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 3.7e-58 229.2 283 47.7
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 8.3e-58 228.0 285 48.1
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 3.1e-57 226.1 284 48.2
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 2.7e-56 223.0 286 49.7
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 1.3e-55 220.7 285 47.7
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 2.3e-55 219.9 321 43.0
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 3.8e-55 219.2 285 49.1
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 5.5e-54 215.3 285 48.4
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 4.7e-53 212.2 285 46.3
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 1.4e-52 210.7 288 43.8
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 1.8e-52 210.3 284 46.5
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.8e-52 210.3 283 44.2
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.8e-52 210.3 283 44.2
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 2.3e-52 209.9 290 47.2
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 1.5e-51 207.2 286 44.4
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 5.7e-51 205.3 285 47.0
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 9.8e-51 204.5 288 45.5
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 1.7e-50 203.8 293 43.7
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 3.5e-48 196.1 266 46.6
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 3.3e-46 189.5 283 42.8
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 4.3e-46 189.1 198 53.0
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 1.8e-44 183.7 212 50.9
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 4.0e-44 182.6 273 44.3
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 2.0e-40 170.2 234 48.3
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 5.0e-39 165.6 202 45.0
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 2.5e-38 163.3 309 40.5
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 7.3e-38 161.8 286 40.9
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 7.5e-35 151.8 284 39.4
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 1.6e-32 144.1 139 51.8
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 3.9e-31 139.4 105 76.2
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 4.0e-28 129.4 252 35.7
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 5.2e-28 129.0 209 38.8
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 2.1e-21 107.1 208 35.6
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 1.0e-15 88.2 248 33.5
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 1.8e-12 77.4 121 43.0
Glyma.16G121250 Glycine max HOM05D001598 ORTHO05D046738 2.4e-12 77.0 88 56.8
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 6.0e-08 62.4 64 48.4
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 6.6e-07 58.9 39 71.8
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 6.6e-07 58.9 39 71.8
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 2.5e-06 57.0 99 38.4


User provided reference genes

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