Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11433 Trifolium pratense HOM05D001728 ORTHO05D004321 1.1e-40 169.5 86 100.0
Lj3g0026896 Lotus japonicus HOM05D001728 ORTHO05D004321 2.2e-15 85.5 55 85.5
Ca_23449_v3 Cicer arietinum L. HOM05D001728 ORTHO05D004321 1.8e-14 82.4 55 81.8
Phvul.010G122800 Phaseolus vulgaris HOM05D001728 ORTHO05D004321 1.8e-14 82.4 55 81.8
GSVIVG01016663001 Vitis vinifera HOM05D001728 ORTHO05D004321 2.4e-14 82.0 55 81.8
arahy.Tifrunner.gnm1.ann1.158S68 Arachis hypogaea HOM05D001728 ORTHO05D004321 3.1e-14 81.6 55 81.8
Glyma.07G046200 Glycine max HOM05D001728 ORTHO05D004321 3.1e-14 81.6 55 81.8
Lalb_Chr04g0253961 Lupinus albus HOM05D001728 ORTHO05D004321 3.1e-14 81.6 55 81.8
VMungo0331G1763 Vigna mungo HOM05D001728 ORTHO05D004321 3.1e-14 81.6 55 81.8
Medtr8g023380 Medicago truncatula HOM05D001728 ORTHO05D004321 4.1e-14 81.3 55 80.0
arahy.Tifrunner.gnm1.ann1.FK8434 Arachis hypogaea HOM05D001728 ORTHO05D004321 5.4e-14 80.9 53 79.2
Lalb_Chr17g0343191 Lupinus albus HOM05D001728 ORTHO05D004321 7.0e-14 80.5 55 80.0
Glyma.16G014400 Glycine max HOM05D001728 ORTHO05D004321 9.1e-14 80.1 55 80.0
Aa31LG7G2090 Aethionema arabicum HOM05D001728 ORTHO05D004321 2.0e-13 79.0 55 78.2
Psat4g164960 Pisum sativum HOM05D001728 ORTHO05D004321 2.0e-13 79.0 55 80.0
TPR.G29473 Trifolium pratense HOM05D001728 ORTHO05D004321 2.0e-13 79.0 54 79.6
Lalb_Chr04g0261251 Lupinus albus HOM05D001728 ORTHO05D004321 2.7e-13 78.6 55 78.2
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 3.5e-13 78.2 55 78.2
MD09G1172300 Malus domestica HOM05D001728 ORTHO05D004321 3.5e-13 78.2 54 77.8
Rhsim12G0213200 Rhododendron simsii HOM05D000276 ORTHO05D003951 4.5e-13 77.8 49 79.6
Actinidia31146 Actinidia chinensis HOM05D001728 ORTHO05D004321 5.9e-13 77.4 55 76.4
QL05p000874 Quercus lobata HOM05D001728 ORTHO05D004321 5.9e-13 77.4 55 76.4
QL05p001120 Quercus lobata HOM05D001728 ORTHO05D004321 5.9e-13 77.4 55 76.4
THA.LOC104813967 Tarenaya hassleriana HOM05D001728 ORTHO05D004321 7.7e-13 77.0 55 74.5
Prupe.3G030700 Prunus persica HOM05D001728 ORTHO05D004321 1.0e-12 76.6 55 74.5
PGR102G2367 Punica granatum HOM05D001728 ORTHO05D004321 1.0e-12 76.6 55 76.4
Hund05701 Selenicereus undatus HOM05D001728 ORTHO05D004321 1.0e-12 76.6 55 74.5
Sc15g0004040 Simmondsia chinensis HOM05D001728 ORTHO05D004321 1.0e-12 76.6 55 74.5
FvH4_6g35920 Fragaria vesca HOM05D001728 ORTHO05D004321 1.3e-12 76.3 55 74.5
FAN05G3900 Fragaria x ananassa HOM05D001728 ORTHO05D004321 1.3e-12 76.3 55 74.5
FAN09G1109 Fragaria x ananassa HOM05D001728 ORTHO05D004321 1.3e-12 76.3 55 74.5
FAN14G1964 Fragaria x ananassa HOM05D001728 ORTHO05D004321 1.3e-12 76.3 55 74.5
FAN14G5216 Fragaria x ananassa HOM05D001728 ORTHO05D004321 1.3e-12 76.3 55 74.5
RcHm_v2.0_Chr2g0148081 Rosa chinensis HOM05D001728 ORTHO05D004321 1.3e-12 76.3 55 74.5
MD17G1154600 Malus domestica HOM05D001728 ORTHO05D004321 1.7e-12 75.9 55 72.7
Sed0018882 Sechium edule HOM05D001728 ORTHO05D004321 1.7e-12 75.9 55 74.5
vmacro18718 Vaccinium macrocarpon HOM05D001728 ORTHO05D004321 1.7e-12 75.9 55 76.4
vmacro18772 Vaccinium macrocarpon HOM05D001728 ORTHO05D004321 1.7e-12 75.9 55 76.4
Dinv20378 Davidia involucrata HOM05D001728 ORTHO05D004321 2.3e-12 75.5 55 74.5
Ciclev10026383m.g Citrus clementina HOM05D001728 ORTHO05D004321 3.8e-12 74.7 55 72.7
Cc04_g00660 Coffea canephora HOM05D001728 ORTHO05D004321 3.8e-12 74.7 55 72.7
Hma1.2p1_1999F.1_g310540 Hydrangea macrophylla HOM05D001728 ORTHO05D004321 3.8e-12 74.7 55 72.7
FAN02G4585 Fragaria x ananassa HOM05D001728 ORTHO05D004321 5.0e-12 74.3 55 72.7
Cpa.g.sc25.198 Carica papaya HOM05D001728 ORTHO05D004321 6.6e-12 73.9 55 74.5
ClCG07G014270 Citrullus lanatus HOM05D001728 ORTHO05D004321 6.6e-12 73.9 55 72.7
MELO3C022707.2 Cucumis melo HOM05D001728 ORTHO05D004321 6.6e-12 73.9 55 72.7
CsaV3_3G031050 Cucumis sativus L. HOM05D001728 ORTHO05D004321 6.6e-12 73.9 55 72.7
Lj5A28G49 Lonicera japonica HOM05D001728 ORTHO05D004321 6.6e-12 73.9 55 72.7
Lj9A539T85 Lonicera japonica HOM05D001728 ORTHO05D004321 6.6e-12 73.9 55 69.1
Manes.11G012300 Manihot esculenta HOM05D001728 ORTHO05D004321 6.6e-12 73.9 55 72.7
Rhsim08G0245100 Rhododendron simsii HOM05D001728 ORTHO05D004321 6.6e-12 73.9 55 72.7
THA.LOC104812276 Tarenaya hassleriana HOM05D001728 ORTHO05D004321 6.6e-12 73.9 55 72.7
TWI14G1006 Tripterygium wilfordii HOM05D001728 ORTHO05D004321 6.6e-12 73.9 49 73.5
Duzib235G0145 Durio zibethinus HOM05D001728 ORTHO05D004321 8.6e-12 73.6 55 70.9
Eucgr.J02593 Eucalyptus grandis HOM05D001728 ORTHO05D004321 8.6e-12 73.6 55 72.7
Sed0008897 Sechium edule HOM05D001728 ORTHO05D004321 8.6e-12 73.6 55 72.7
Solyc06g063100.3 Solanum lycopersicum HOM05D001728 ORTHO05D004321 8.6e-12 73.6 55 70.9
Sopen06g022550 Solanum pennellii HOM05D001728 ORTHO05D004321 8.6e-12 73.6 55 70.9
PGSC0003DMG401004867 Solanum tuberosum HOM05D001728 ORTHO05D004321 8.6e-12 73.6 55 70.9
AL1G29530 Arabidopsis lyrata HOM05D001728 ORTHO05D004321 1.1e-11 73.2 55 72.7
BcaC05g25652 Brassica carinata HOM05D001728 ORTHO05D004321 1.1e-11 73.2 55 72.7
BcaC07g41430 Brassica carinata HOM05D001728 ORTHO05D004321 1.1e-11 73.2 55 72.7
A06p13230 Brassica napus HOM05D001728 ORTHO05D004321 1.1e-11 73.2 55 72.7
A09p60490 Brassica napus HOM05D001728 ORTHO05D004321 1.1e-11 73.2 55 72.7
C05p15670 Brassica napus HOM05D001728 ORTHO05D004321 1.1e-11 73.2 55 72.7
BolC5t30274H Brassica oleracea HOM05D001728 ORTHO05D004321 1.1e-11 73.2 55 72.7
BolC8t51946H Brassica oleracea HOM05D001728 ORTHO05D004321 1.1e-11 73.2 55 72.7
BraA06t24476Z Brassica rapa HOM05D001728 ORTHO05D004321 1.1e-11 73.2 55 72.7
BraA09t41420Z Brassica rapa HOM05D001728 ORTHO05D004321 1.1e-11 73.2 55 72.7
Cfa003458 Carpinus fangiana HOM05D001728 ORTHO05D004321 1.1e-11 73.2 55 70.9
AT1G17280 Arabidopsis thaliana HOM05D001728 ORTHO05D004321 1.5e-11 72.8 55 72.7
BcaB07g34036 Brassica carinata HOM05D001728 ORTHO05D004321 1.5e-11 72.8 55 72.7
BcaC07g41410 Brassica carinata HOM05D001728 ORTHO05D004321 1.5e-11 72.8 55 72.7
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.5e-11 72.8 55 70.9
Hma1.2p1_0090F.1_g045760 Hydrangea macrophylla HOM05D001728 ORTHO05D004321 1.5e-11 72.8 55 72.7
Hma1.2p1_2628F.1_g325685 Hydrangea macrophylla HOM05D001728 ORTHO05D004321 1.5e-11 72.8 55 72.7
Manes.04G151300 Manihot esculenta HOM05D001728 ORTHO05D004321 1.5e-11 72.8 55 72.7
SEGI_06866 Sequoiadendron giganteum HOM05D001728 ORTHO05D004321 1.5e-11 72.8 55 70.9
CARHR257870 Cardamine hirsuta HOM05D001728 ORTHO05D004321 1.9e-11 72.4 55 70.9
CiPaw.01G211100 Carya illinoinensis HOM05D001728 ORTHO05D004321 1.9e-11 72.4 55 70.9
Peaxi162Scf00207g01547 Petunia axillaris HOM05D001728 ORTHO05D004321 1.9e-11 72.4 55 70.9
C08p43970 Brassica napus HOM05D001728 ORTHO05D004321 2.5e-11 72.0 55 70.9
Carub.0001s1704 Capsella rubella HOM05D001728 ORTHO05D004321 2.5e-11 72.0 55 72.7
Haze_16140 Corylus avellana HOM05D001728 ORTHO05D004321 2.5e-11 72.0 47 74.5
Peaxi162Scf00038g02337 Petunia axillaris HOM05D001728 ORTHO05D004321 2.5e-11 72.0 55 70.9
Sabra01G0130400 Salix brachista HOM05D001728 ORTHO05D004321 2.5e-11 72.0 55 72.7
TAR624G0656 Trochodendron aralioides HOM05D001728 ORTHO05D004321 2.5e-11 72.0 55 70.9
CAN.G1682.23 Capsicum annuum HOM05D001728 ORTHO05D004321 3.3e-11 71.6 55 69.1
CARHR017870 Cardamine hirsuta HOM05D001728 ORTHO05D004321 3.3e-11 71.6 55 70.9
DCAR_007661 Daucus carota HOM05D001728 ORTHO05D004321 3.3e-11 71.6 55 70.9
Thhalv10014520m.g Eutrema salsugineum HOM05D001728 ORTHO05D004321 3.3e-11 71.6 55 70.9
Thecc.06G130700 Theobroma cacao HOM05D001728 ORTHO05D004321 3.3e-11 71.6 55 69.1
AL8G24660 Arabidopsis lyrata HOM05D001728 ORTHO05D004321 4.2e-11 71.2 55 70.9
Carub.0008s1054 Capsella rubella HOM05D001728 ORTHO05D004321 4.2e-11 71.2 55 69.1
Nitab4.5_0006190g0040 Nicotiana tabacum HOM05D001728 ORTHO05D004321 4.2e-11 71.2 49 69.4
Nitab4.5_0009717g0020 Nicotiana tabacum HOM05D001728 ORTHO05D004321 4.2e-11 71.2 49 69.4
Sp1g15410 Schrenkiella parvula HOM05D001728 ORTHO05D004321 4.2e-11 71.2 55 70.9
CAN.G790.54 Capsicum annuum HOM05D001728 ORTHO05D004321 5.5e-11 70.9 55 69.1
Solyc03g123660.3 Solanum lycopersicum HOM05D001728 ORTHO05D004321 5.5e-11 70.9 55 69.1
Sopen03g041430 Solanum pennellii HOM05D001728 ORTHO05D004321 5.5e-11 70.9 55 69.1
AT5G50430 Arabidopsis thaliana HOM05D001728 ORTHO05D004321 7.2e-11 70.5 55 69.1
Gohir.D06G148500 Gossypium hirsutum HOM05D001728 ORTHO05D004321 7.2e-11 70.5 55 69.1
Gorai.010G173000 Gossypium raimondii HOM05D001728 ORTHO05D004321 7.2e-11 70.5 55 69.1
PSO135G0334 Papaver somniferum HOM05D001728 ORTHO05D004321 7.2e-11 70.5 55 67.3
PSO724G0814 Papaver somniferum HOM05D001728 ORTHO05D004321 7.2e-11 70.5 55 67.3
SGA_v2.0_scaffold122G33304 Striga asiatica HOM05D001728 ORTHO05D004321 7.2e-11 70.5 55 69.1
ATR0099G071 Amborella trichopoda HOM05D001728 ORTHO05D004321 9.5e-11 70.1 55 67.3
EL10Ac7g16497 Beta vulgaris HOM05D001728 ORTHO05D004321 9.5e-11 70.1 75 56.0
Thhalv10009625m.g Eutrema salsugineum HOM05D001728 ORTHO05D004321 9.5e-11 70.1 55 69.1
Lsat_1_v5_gn_4_90580 Lactuca sativa HOM05D001728 ORTHO05D004321 9.5e-11 70.1 55 67.3
Nitab4.5_0006338g0070 Nicotiana tabacum HOM05D001728 ORTHO05D004321 9.5e-11 70.1 48 70.8
Nitab4.5_0006966g0050 Nicotiana tabacum HOM05D001728 ORTHO05D004321 9.5e-11 70.1 48 70.8
TWI23G0186 Tripterygium wilfordii HOM05D001728 ORTHO05D004321 9.5e-11 70.1 47 72.3
CANSAT56G0906 Cannabis sativa HOM05D001728 ORTHO05D004321 1.2e-10 69.7 60 63.3
Aqoxy549s001 Aquilegia oxysepala HOM05D001728 ORTHO05D004321 1.6e-10 69.3 48 66.7
C08p17810 Brassica napus HOM05D001728 ORTHO05D004321 1.6e-10 69.3 55 69.1
BolC8t49407H Brassica oleracea HOM05D001728 ORTHO05D004321 1.6e-10 69.3 55 69.1
Gohir.D10G051032 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.6e-10 69.3 55 67.3
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 1.6e-10 69.3 55 67.3
HanXRQChr09g0277281 Helianthus annuus HOM05D001728 ORTHO05D004321 1.6e-10 69.3 53 71.7
CiPaw.02G130700 Carya illinoinensis HOM05D001728 ORTHO05D004321 2.1e-10 68.9 55 69.1
Gohir.A06G142800 Gossypium hirsutum HOM05D001728 ORTHO05D004321 2.1e-10 68.9 55 67.3
Potri.001G162200 Populus trichocarpa HOM05D001728 ORTHO05D004321 2.1e-10 68.9 55 69.1
Aqoxy7G00928 Aquilegia oxysepala HOM05D001728 ORTHO05D004321 2.8e-10 68.6 55 63.6
BcaB03g13008 Brassica carinata HOM05D001728 ORTHO05D004321 2.8e-10 68.6 55 69.1
Duzib160G0016 Durio zibethinus HOM05D001728 ORTHO05D004321 2.8e-10 68.6 55 67.3
Oeu006754.1 Olea europaea HOM05D001728 ORTHO05D004321 2.8e-10 68.6 47 68.1
PGSC0003DMG400009150 Solanum tuberosum HOM05D001728 ORTHO05D004321 2.8e-10 68.6 64 56.2
BcaC07g38844 Brassica carinata HOM05D001728 ORTHO05D004321 3.6e-10 68.2 58 63.8
AUR62043999 Chenopodium quinoa HOM05D001728 ORTHO05D004321 3.6e-10 68.2 60 63.3
A08p30990 Brassica napus HOM05D001728 ORTHO05D004321 4.7e-10 67.8 55 67.3
BraA08t35028Z Brassica rapa HOM05D001728 ORTHO05D004321 4.7e-10 67.8 55 67.3
ECA232G0029 Erigeron canadensis HOM05D001728 ORTHO05D004321 4.7e-10 67.8 55 67.3
SalBow6G2824 Salvia bowleyana HOM05D001728 ORTHO05D004321 6.1e-10 67.4 47 70.2
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 1.0e-09 66.6 55 65.5
AUR62025612 Chenopodium quinoa HOM05D001728 ORTHO05D004321 1.0e-09 66.6 55 67.3
AUR62043500 Chenopodium quinoa HOM05D001728 ORTHO05D004321 1.0e-09 66.6 55 67.3
Oeu053418.1 Olea europaea HOM05D001728 ORTHO05D004321 1.4e-09 66.2 55 63.6
Potri.003G073100 Populus trichocarpa HOM05D001728 ORTHO05D004321 1.8e-09 65.9 55 65.5
SMO236G0070 Selaginella moellendorffii HOM05D001728 ORTHO05D004321 1.8e-09 65.9 52 67.3
SMO347G0576 Selaginella moellendorffii HOM05D001728 ORTHO05D004321 1.8e-09 65.9 52 67.3
TAR626G1627 Trochodendron aralioides HOM05D001728 ORTHO05D004321 2.3e-09 65.5 54 64.8
MBI19_g32874_MAGBIO Magnolia biondii HOM05D001728 ORTHO05D004321 3.0e-09 65.1 48 62.5
Oeu015470.1 Olea europaea HOM05D001728 ORTHO05D004321 4.0e-09 64.7 47 63.8
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 6.8e-09 63.9 58 60.3
AagrBONN_evm.TU.Sc2ySwM_228.340 Anthoceros agrestis HOM05D001728 ORTHO05D004321 8.9e-09 63.5 47 63.8
Migut.I01136 Erythranthe guttata HOM05D001728 ORTHO05D004321 8.9e-09 63.5 60 61.7
Mapoly0008s0153 Marchantia polymorpha HOM05D001728 ORTHO05D004321 8.9e-09 63.5 53 64.2
MSTRG.10907 Avicennia marina HOM05D001728 ORTHO05D004321 1.5e-08 62.8 52 67.3
COL.COLO4_30874 Corchorus olitorius HOM05D001728 ORTHO05D004321 1.5e-08 62.8 55 61.8
vmacro22013 Vaccinium macrocarpon HOM05D001728 ORTHO05D004321 1.5e-08 62.8 55 67.3
Pp3c22_19100 Physcomitrium patens HOM05D001728 ORTHO05D004321 4.4e-08 61.2 53 62.3
unitig_26.g8911 Utricularia gibba HOM05D001728 ORTHO05D004321 7.5e-08 60.5 55 61.8
Ah.15g094900 Amaranthus hybridus HOM05D001728 ORTHO05D004321 1.3e-07 59.7 55 65.5
Zm00001eb367340 Zea mays HOM05D001728 ORTHO05D004321 6.3e-07 57.4 62 58.1
CDE07G0536 Ceratophyllum demersum HOM05D001728 ORTHO05D004321 1.1e-06 56.6 54 55.6
CBR_g29935 Chara braunii HOM05D001728 ORTHO05D004321 1.1e-06 56.6 48 56.2
Os06g0193000 Oryza sativa ssp. japonica HOM05D001728 ORTHO05D004321 1.4e-06 56.2 58 62.1
Zm00001eb028890 Zea mays HOM05D001728 ORTHO05D004321 1.4e-06 56.2 54 59.3
Zm00001eb171360 Zea mays HOM05D001728 ORTHO05D004321 1.4e-06 56.2 54 59.3
Zm00001eb210040 Zea mays HOM05D001728 ORTHO05D004321 1.4e-06 56.2 54 59.3
Zm00001eb241260 Zea mays HOM05D001728 ORTHO05D004321 1.4e-06 56.2 54 59.3
Zm00001eb278450 Zea mays HOM05D001728 ORTHO05D004321 1.4e-06 56.2 62 58.1
Zm00001eb315560 Zea mays HOM05D001728 ORTHO05D004321 1.4e-06 56.2 54 59.3
Zm00001eb329650 Zea mays HOM05D001728 ORTHO05D004321 1.4e-06 56.2 54 59.3
Zm00001eb399730 Zea mays HOM05D001728 ORTHO05D004321 1.4e-06 56.2 54 59.3
Zm00001eb374150 Zea mays HOM05D001728 ORTHO05D004321 1.8e-06 55.8 58 60.3
AUR62001400 Chenopodium quinoa HOM05D001728 ORTHO05D004321 3.1e-06 55.1 55 61.8
Atru.chr1.4160 Acer truncatum HOM05D001728 ORTHO05D004321 9.2e-06 53.5 47 63.8
Cre08.g372400 Chlamydomonas reinhardtii HOM05D001728 ORTHO05D004321 9.2e-06 53.5 52 55.8


User provided reference genes

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