Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10691 Trifolium pratense HOM05D005966 ORTHO05D007584 0.0e+00 1305.0 658 100.0
Medtr4g114100 Medicago truncatula HOM05D005966 ORTHO05D007584 0.0e+00 1159.1 662 89.7
Psat4g039400 Pisum sativum HOM05D005966 ORTHO05D007584 0.0e+00 1120.1 658 87.1
Ca_21691_v3 Cicer arietinum L. HOM05D005966 ORTHO05D007584 0.0e+00 1113.2 658 87.2
Lj4g0014642 Lotus japonicus HOM05D005966 ORTHO05D007584 2.2e-301 1038.5 659 81.9
VMungo1215G0752 Vigna mungo HOM05D005966 ORTHO05D007584 2.1e-299 1031.9 663 80.1
Glyma.05G009700 Glycine max HOM05D005966 ORTHO05D007584 4.6e-299 1030.8 658 80.2
Phvul.003G161800 Phaseolus vulgaris HOM05D005966 ORTHO05D007584 2.8e-296 1021.5 661 79.9
Glyma.17G117600 Glycine max HOM05D005966 ORTHO05D007584 2.0e-294 1015.4 660 79.5
Lalb_Chr07g0178861 Lupinus albus HOM05D005966 ORTHO05D007584 1.0e-290 1003.0 659 77.8
arahy.Tifrunner.gnm1.ann1.QB31BF Arachis hypogaea HOM05D005966 ORTHO05D007584 7.9e-283 976.9 659 76.9
arahy.Tifrunner.gnm1.ann1.Z0FLIL Arachis hypogaea HOM05D005966 ORTHO05D007584 3.8e-277 958.0 671 75.0
CiPaw.04G170200 Carya illinoinensis HOM05D005966 ORTHO05D007584 2.2e-240 835.9 650 66.0
Cfa003353 Carpinus fangiana HOM05D005966 ORTHO05D007584 9.1e-239 830.5 659 65.4
Haze_25609 Corylus avellana HOM05D005966 ORTHO05D007584 7.7e-238 827.4 670 64.5
RcHm_v2.0_Chr7g0212931 Rosa chinensis HOM05D005966 ORTHO05D007584 9.8e-233 810.4 659 64.0
Dinv36541 Davidia involucrata HOM05D005966 ORTHO05D007584 5.4e-231 804.7 662 64.4
Prupe.7G240500 Prunus persica HOM05D005966 ORTHO05D007584 7.0e-231 804.3 658 63.5
MD15G1175600 Malus domestica HOM05D005966 ORTHO05D007584 2.0e-230 802.7 659 63.0
Atru.chr7.1212 Acer truncatum HOM05D005966 ORTHO05D007584 1.0e-229 800.4 661 63.2
FvH4_5g23630 Fragaria vesca HOM05D005966 ORTHO05D007584 3.9e-229 798.5 659 63.1
GSVIVG01015509001 Vitis vinifera HOM05D005966 ORTHO05D007584 6.6e-229 797.7 660 62.3
FAN13G2896 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.5e-228 796.6 659 63.1
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.9e-228 796.2 658 63.2
Ciclev10007689m.g Citrus clementina HOM05D005966 ORTHO05D007584 4.7e-227 791.6 653 61.4
CANSAT11G2564 Cannabis sativa HOM05D005966 ORTHO05D007584 2.2e-224 782.7 657 63.0
Potri.015G057100 Populus trichocarpa HOM05D005966 ORTHO05D007584 1.9e-223 779.6 665 60.6
Duzib187G1826 Durio zibethinus HOM05D005966 ORTHO05D007584 1.2e-222 776.9 662 61.3
CsaV3_5G040100 Cucumis sativus L. HOM05D005966 ORTHO05D007584 1.1e-220 770.4 663 61.5
FAN18G2691 Fragaria x ananassa HOM05D005966 ORTHO05D007584 5.6e-220 768.1 635 63.3
Eucgr.C04186 Eucalyptus grandis HOM05D005966 ORTHO05D007584 3.6e-219 765.4 653 62.8
Hma1.2p1_0018F.1_g012590 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 3.6e-219 765.4 665 61.5
MELO3C022187.2 Cucumis melo HOM05D005966 ORTHO05D007584 4.7e-219 765.0 663 61.5
ClCG08G000940 Citrullus lanatus HOM05D005966 ORTHO05D007584 1.1e-218 763.8 662 61.8
Thecc.09G123800 Theobroma cacao HOM05D005966 ORTHO05D007584 4.4e-217 758.4 664 60.5
Nn2g12002 Nelumbo nucifera HOM05D005966 ORTHO05D007584 1.6e-214 750.0 664 59.5
Sabra15G0082400 Salix brachista HOM05D005966 ORTHO05D007584 1.6e-214 750.0 665 59.2
Sed0002176 Sechium edule HOM05D005966 ORTHO05D007584 1.3e-213 746.9 659 60.4
Actinidia07431 Actinidia chinensis HOM05D005966 ORTHO05D007584 2.5e-212 742.7 662 60.0
Gorai.001G041100 Gossypium raimondii HOM05D005966 ORTHO05D007584 9.5e-212 740.7 660 58.5
Gohir.A07G035000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.2e-211 740.3 663 58.7
PGR102G3358 Punica granatum HOM05D005966 ORTHO05D007584 1.1e-210 737.3 658 60.8
Gorai.009G019100 Gossypium raimondii HOM05D005966 ORTHO05D007584 1.8e-210 736.5 668 58.8
QL02p087915 Quercus lobata HOM05D005966 ORTHO05D007584 1.2e-209 733.8 916 47.4
vmacro06121 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 2.0e-209 733.0 678 57.7
vmacro06181 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 2.0e-209 733.0 678 57.7
Gohir.A05G017800 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.1e-207 727.2 668 58.2
Lj7C631G5 Lonicera japonica HOM05D005966 ORTHO05D007584 1.2e-206 723.8 753 55.1
Cc06_g08730 Coffea canephora HOM05D005966 ORTHO05D007584 8.6e-205 717.6 668 56.7
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.1e-204 717.2 632 60.8
Actinidia26399 Actinidia chinensis HOM05D005966 ORTHO05D007584 4.3e-204 715.3 682 57.9
CSS0033485 Camellia sinensis var. sinensis HOM05D005966 ORTHO05D007584 6.2e-203 711.4 669 58.3
DCAR_014873 Daucus carota HOM05D005966 ORTHO05D007584 5.2e-202 708.4 656 57.8
PSO455G0207 Papaver somniferum HOM05D005966 ORTHO05D007584 5.8e-201 704.9 656 56.7
Sopen12g002600 Solanum pennellii HOM05D005966 ORTHO05D007584 2.2e-200 703.0 661 57.3
SGA_v2.0_scaffold163G38051 Striga asiatica HOM05D005966 ORTHO05D007584 2.2e-200 703.0 664 56.9
PGSC0003DMG400020667 Solanum tuberosum HOM05D005966 ORTHO05D007584 4.9e-200 701.8 661 57.5
Solyc12g006650.2 Solanum lycopersicum HOM05D005966 ORTHO05D007584 6.4e-200 701.4 660 57.3
Nitab4.5_0007523g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 1.4e-199 700.3 666 57.2
PSO170G3915 Papaver somniferum HOM05D005966 ORTHO05D007584 2.4e-199 699.5 656 56.6
Nitab4.5_0010819g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 3.2e-199 699.1 669 57.0
Lsat_1_v5_gn_8_59020 Lactuca sativa HOM05D005966 ORTHO05D007584 4.6e-198 695.3 667 57.0
MSTRG.14036 Avicennia marina HOM05D005966 ORTHO05D007584 1.7e-197 693.3 665 56.1
Aqoxy5G00491 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 1.9e-196 689.9 667 55.9
CAN.G377.10 Capsicum annuum HOM05D005966 ORTHO05D007584 3.3e-196 689.1 661 56.7
Manes.06G049700 Manihot esculenta HOM05D005966 ORTHO05D007584 2.0e-193 679.9 662 56.0
ECA236G0249 Erigeron canadensis HOM05D005966 ORTHO05D007584 2.6e-193 679.5 664 56.3
HanXRQChr04g0104201 Helianthus annuus HOM05D005966 ORTHO05D007584 9.9e-193 677.6 661 55.4
Aa31LG1G14440 Aethionema arabicum HOM05D005966 ORTHO05D007584 2.9e-192 676.0 657 55.7
Oeu021589.1 Olea europaea HOM05D005966 ORTHO05D007584 4.9e-192 675.2 629 57.7
CARHR192650 Cardamine hirsuta HOM05D005966 ORTHO05D007584 1.9e-191 673.3 664 56.2
Sp6g24230 Schrenkiella parvula HOM05D005966 ORTHO05D007584 1.9e-191 673.3 662 56.9
Oeu018459.1 Olea europaea HOM05D005966 ORTHO05D007584 3.2e-191 672.5 643 56.9
Carub.0006s1857 Capsella rubella HOM05D005966 ORTHO05D007584 2.7e-190 669.5 662 56.0
Thhalv10012923m.g Eutrema salsugineum HOM05D005966 ORTHO05D007584 2.7e-190 669.5 662 56.6
A03p09900 Brassica napus HOM05D005966 ORTHO05D007584 3.5e-190 669.1 664 55.9
Gohir.D07G039000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 4.6e-190 668.7 663 54.6
AL6G31730 Arabidopsis lyrata HOM05D005966 ORTHO05D007584 1.7e-189 666.8 661 55.8
SalBow1G1471 Salvia bowleyana HOM05D005966 ORTHO05D007584 1.7e-189 666.8 741 51.0
C03p11480 Brassica napus HOM05D005966 ORTHO05D007584 1.5e-188 663.7 664 55.7
BolC3t13620H Brassica oleracea HOM05D005966 ORTHO05D007584 1.5e-188 663.7 664 55.6
AT5G20170 Arabidopsis thaliana HOM05D005966 ORTHO05D007584 3.3e-188 662.5 667 55.6
Peaxi162Scf00984g00027 Petunia axillaris HOM05D005966 ORTHO05D007584 9.6e-188 661.0 636 56.3
Gohir.D05G018700 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.6e-187 660.2 665 54.3
Migut.E01544 Erythranthe guttata HOM05D005966 ORTHO05D007584 6.2e-187 658.3 662 55.1
Rhsim03G0247300 Rhododendron simsii HOM05D005966 ORTHO05D007584 1.4e-186 657.1 586 60.4
THA.LOC104799647 Tarenaya hassleriana HOM05D005966 ORTHO05D007584 1.2e-185 654.1 661 54.2
BraA03t10303Z Brassica rapa HOM05D005966 ORTHO05D007584 2.2e-184 649.8 664 54.7
Hund26492 Selenicereus undatus HOM05D005966 ORTHO05D007584 6.9e-178 628.2 663 51.6
AUR62033484 Chenopodium quinoa HOM05D005966 ORTHO05D007584 5.5e-175 618.6 654 51.5
AUR62011094 Chenopodium quinoa HOM05D005966 ORTHO05D007584 1.9e-172 610.1 654 50.3
Sabra15G0082900 Salix brachista HOM05D005966 ORTHO05D007584 2.5e-172 609.8 676 52.1
EL10Ac8g18623 Beta vulgaris HOM05D005966 ORTHO05D007584 2.4e-170 603.2 658 50.5
Ah.14g080180 Amaranthus hybridus HOM05D005966 ORTHO05D007584 9.7e-164 581.3 631 50.9
ATR1156G034 Amborella trichopoda HOM05D005966 ORTHO05D007584 2.2e-163 580.1 667 49.2
MD02G1034800 Malus domestica HOM05D005966 ORTHO05D007584 1.2e-161 574.3 678 50.7
HPP92_009844 Vanilla planifolia HOM05D005966 ORTHO05D007584 1.9e-159 567.0 661 47.8
Os12g0638600 Oryza sativa ssp. japonica HOM05D005966 ORTHO05D007584 8.8e-157 558.1 659 48.0
Zm00001eb207940 Zea mays HOM05D005966 ORTHO05D007584 1.8e-146 523.9 661 44.5
Cpa.g.sc75.51 Carica papaya HOM05D005966 ORTHO05D007584 3.6e-142 509.6 492 55.5
SEGI_37567 Sequoiadendron giganteum HOM05D005966 ORTHO05D007584 2.0e-140 503.8 704 42.6
CDE01G0041 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 1.9e-135 487.3 552 49.8
unitig_578.g16582 Utricularia gibba HOM05D005966 ORTHO05D007584 2.3e-133 480.3 660 43.6
Glyma.14G007400 Glycine max HOM05D005966 ORTHO05D007584 4.8e-131 472.6 296 82.4
Sc08g0006730 Simmondsia chinensis HOM05D005966 ORTHO05D007584 1.9e-119 434.1 519 47.0
Zm00001eb334260 Zea mays HOM05D005966 ORTHO05D007584 2.3e-104 384.0 544 42.5
Mapoly0010s0026 Marchantia polymorpha HOM05D005966 ORTHO05D007584 3.8e-91 340.1 715 33.7
Pp3c3_25450 Physcomitrium patens HOM05D005966 ORTHO05D007584 1.8e-85 321.2 650 33.5
SHI18656 Sapria himalayana HOM05D005966 ORTHO05D007584 3.1e-85 320.5 528 38.6
COL.COLO4_05778 Corchorus olitorius HOM05D005966 ORTHO05D007584 2.1e-78 297.7 381 46.2
SMO200G0046 Selaginella moellendorffii HOM05D005966 ORTHO05D007584 4.9e-75 286.6 654 31.5
FAN08G0676 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.4e-61 241.9 164 76.8
AagrBONN_evm.TU.Sc2ySwM_117.630 Anthoceros agrestis HOM05D005966 ORTHO05D007584 8.7e-48 196.1 469 31.6
Sc08g0006740 Simmondsia chinensis HOM05D005966 ORTHO05D007584 2.4e-45 188.0 149 67.1
TAR625G1387 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.7e-38 165.2 395 33.9
SHI18657 Sapria himalayana HOM05D005966 ORTHO05D007584 1.8e-37 161.8 136 64.0
Dinv41526 Davidia involucrata HOM05D006513 ORTHO05D008150 1.1e-34 152.5 165 51.5
Cpa.g.sc75.52 Carica papaya HOM05D005966 ORTHO05D007584 3.5e-28 131.0 99 66.7
Aqoxy7G02129 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 3.8e-27 127.5 159 52.2
CBR_g48370 Chara braunii HOM05D005966 ORTHO05D000048 1.2e-23 115.9 199 37.2
Hma1.2p1_0090F.1_g045710 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 3.2e-18 97.8 135 41.5
GSVIVG01027692001 Vitis vinifera HOM05D005966 ORTHO05D007584 5.2e-16 90.5 67 67.2
COL.COLO4_05779 Corchorus olitorius HOM05D005966 ORTHO05D007584 4.4e-15 87.4 57 68.4
CAN.G925.3 Capsicum annuum HOM05D005966 ORTHO05D007584 3.1e-13 81.3 85 47.1
CDE11G0857 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 1.3e-11 75.9 67 58.2
Lsat_1_v5_gn_8_82580 Lactuca sativa HOM05D005966 ORTHO05D007584 3.8e-11 74.3 50 70.0
CAN.G1289.8 Capsicum annuum HOM05D005966 ORTHO05D007584 2.1e-09 68.6 54 57.4
Pp3c19_8370 Physcomitrium patens HOM05D005966 ORTHO05D007584 5.2e-08 63.9 113 33.6
AUR62041250 Chenopodium quinoa HOM05D005966 ORTHO05D007584 2.6e-07 61.6 51 60.8
TAR626G0958 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.3e-06 59.3 37 78.4
TAR362G1246 Trochodendron aralioides HOM05D005966 ORTHO05D007584 6.3e-06 57.0 37 75.7


User provided reference genes

Program Settings