Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1363.6 713 100.0
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1243.0 714 90.5
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1216.4 635 96.1
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1201.8 635 94.3
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1199.5 641 94.5
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1196.0 635 93.5
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1192.6 644 92.7
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1189.9 635 93.4
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1189.9 635 93.5
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1187.6 647 92.6
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1184.9 635 93.1
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1181.4 635 92.8
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1181.0 650 91.2
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1157.9 635 89.8
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1157.9 639 90.0
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1157.1 634 90.2
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1156.4 635 90.6
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1156.0 635 89.8
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1155.2 630 90.3
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1154.4 635 89.3
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1153.7 635 89.3
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1153.3 635 89.8
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1151.0 635 89.8
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1149.4 637 89.6
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1149.0 629 89.8
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1148.7 659 87.6
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1148.3 637 89.3
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1146.7 635 89.3
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1144.4 634 88.3
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1144.4 635 88.8
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1144.4 635 89.1
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1143.6 662 86.1
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1143.6 635 89.3
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1143.6 630 89.2
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1143.3 635 89.1
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1142.9 631 89.4
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1142.5 635 89.0
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1141.7 631 88.9
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1141.7 659 86.9
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1140.9 635 89.0
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1140.9 631 89.2
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1140.6 634 88.5
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1140.2 630 89.2
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1139.8 632 89.2
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1139.8 637 88.2
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1139.4 635 88.8
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1139.4 633 88.3
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1139.0 637 88.9
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1138.6 637 88.2
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1138.3 631 88.4
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1137.9 635 88.7
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1136.3 635 88.5
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1135.9 635 87.7
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1135.6 653 87.3
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1135.6 635 88.2
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1134.4 633 87.5
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1134.4 635 88.3
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1132.5 645 87.4
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1132.5 630 88.7
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1132.1 630 88.6
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1132.1 630 88.7
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1131.7 635 88.2
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1130.9 630 88.4
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1130.9 634 88.2
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1130.2 630 88.3
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1130.2 630 88.3
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1129.8 635 88.2
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1128.2 633 87.2
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1127.9 634 86.9
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1127.5 634 86.9
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1127.5 642 85.7
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1127.1 633 86.7
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1127.1 633 87.0
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1127.1 633 87.0
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1127.1 633 87.0
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1126.7 630 87.3
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1125.5 638 86.5
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1125.2 633 86.7
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1125.2 625 89.0
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1123.6 654 84.4
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1123.2 641 86.3
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1122.8 633 86.7
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1122.5 642 85.5
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1122.1 635 86.6
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1122.1 635 86.6
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1120.1 654 83.9
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1118.2 642 85.4
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1116.7 637 86.0
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1115.9 633 86.3
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1109.4 635 86.5
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1109.0 634 85.3
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1108.2 635 86.1
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1103.2 641 84.4
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1102.0 635 86.3
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1101.7 630 86.8
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1095.9 630 86.3
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1095.5 642 83.8
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1090.1 628 85.5
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1078.9 628 84.4
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 4.9e-312 1074.3 628 83.9
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 2.0e-308 1062.0 645 82.8
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 4.2e-306 1054.3 582 89.2
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 3.3e-303 1044.6 631 81.0
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 7.0e-293 1010.4 713 76.2
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 1.9e-290 1002.3 627 78.1
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 8.3e-286 986.9 534 90.4
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 5.2e-280 967.6 539 88.7
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 8.9e-280 966.8 534 88.4
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 5.8e-271 937.6 640 73.9
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 1.1e-266 923.3 629 73.4
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 1.1e-261 906.7 650 71.2
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 8.6e-259 897.1 521 86.8
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 4.6e-244 848.2 503 84.5
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 1.5e-242 843.2 503 84.1
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 1.3e-241 840.1 634 71.1
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 7.9e-236 820.8 637 69.5
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 6.6e-235 817.8 637 65.6
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 2.6e-231 805.8 495 81.0
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.3e-227 793.5 638 62.9
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 3.0e-203 712.6 444 80.6
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.4e-195 687.2 533 68.9
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 1.0e-182 644.4 639 53.5
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.3e-179 633.3 446 74.4
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 4.5e-175 619.0 354 86.7
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.2e-164 584.3 409 74.8
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 1.4e-155 554.3 313 87.5
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 1.0e-150 538.1 302 89.4
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 3.8e-137 493.0 274 88.3
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 4.8e-116 422.9 527 43.3
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 2.7e-95 354.0 199 87.9
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 6.1e-87 326.2 238 70.6
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 3.7e-84 317.0 189 83.1
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 5.3e-83 313.2 231 70.1
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 5.0e-81 306.6 163 92.0
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 1.1e-72 278.9 163 83.4
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 1.8e-70 271.6 635 33.2
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 2.2e-65 254.6 273 55.3
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 1.8e-51 208.4 226 55.8
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 7.0e-43 179.9 99 90.9
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 2.7e-42 177.9 103 84.5
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 3.9e-41 174.1 104 80.8
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 8.6e-41 172.9 109 78.0
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 3.4e-37 161.0 161 60.9
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 5.8e-37 160.2 91 87.9
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 9.8e-37 159.5 91 86.8
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 1.7e-36 158.7 90 86.7
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 1.1e-35 156.0 86 82.6
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 1.0e-33 149.4 117 66.7
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.8e-30 138.7 74 83.8
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 9.9e-21 106.3 53 94.3
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 3.8e-20 104.4 115 52.2
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 1.9e-19 102.1 104 56.7
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 1.7e-17 95.5 51 88.2
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 7.3e-16 90.1 67 64.2
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 9.6e-16 89.7 63 65.1
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 1.4e-14 85.9 49 81.6
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 1.4e-11 75.9 56 62.5
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 1.3e-09 69.3 43 76.7


User provided reference genes

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