Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 5.8e-71 270.8 137 100.0
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 1.5e-66 256.1 137 93.4
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 2.5e-66 255.4 137 94.9
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 1.1e-64 250.0 137 91.2
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 6.7e-59 230.7 140 85.7
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 7.4e-58 227.3 140 84.3
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 7.4e-58 227.3 140 84.3
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 7.4e-58 227.3 140 84.3
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.3e-57 226.5 139 82.7
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 4.8e-57 224.6 140 84.3
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 2.4e-56 222.2 140 82.9
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 9.0e-56 220.3 140 81.4
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.5e-55 219.5 138 81.2
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 3.4e-55 218.4 140 84.3
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 3.4e-55 218.4 138 81.2
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 4.5e-55 218.0 140 79.3
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 7.6e-55 217.2 138 79.7
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 1.0e-54 216.9 140 80.0
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 4.9e-54 214.5 138 79.7
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 1.1e-53 213.4 140 78.6
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.1e-53 213.4 140 77.9
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.1e-53 213.4 140 80.0
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 1.1e-53 213.4 140 78.6
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 1.4e-53 213.0 139 79.9
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 3.2e-53 211.8 140 77.1
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 5.5e-53 211.1 140 77.9
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 5.5e-53 211.1 140 77.9
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 7.1e-53 210.7 140 80.0
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 7.1e-53 210.7 141 78.0
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 9.3e-53 210.3 140 77.9
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.2e-52 209.9 140 78.6
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 1.6e-52 209.5 141 78.0
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 2.1e-52 209.1 140 78.6
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 2.7e-52 208.8 140 78.6
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 3.5e-52 208.4 139 76.3
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 6.0e-52 207.6 138 76.1
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 1.0e-51 206.8 135 77.8
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 1.3e-51 206.5 142 76.8
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 1.3e-51 206.5 141 77.3
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 1.8e-51 206.1 133 79.7
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 1.8e-51 206.1 140 78.6
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 2.3e-51 205.7 139 74.1
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 2.3e-51 205.7 139 75.5
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 2.3e-51 205.7 140 75.7
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 3.9e-51 204.9 136 75.7
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 3.9e-51 204.9 141 75.2
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 5.1e-51 204.5 139 78.4
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 6.7e-51 204.1 140 81.4
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 6.7e-51 204.1 140 74.3
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 8.7e-51 203.8 140 79.3
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.1e-50 203.4 140 75.0
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.1e-50 203.4 140 75.0
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.5e-50 203.0 141 77.3
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 2.5e-50 202.2 140 75.7
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.5e-50 202.2 140 75.0
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 3.3e-50 201.8 136 76.5
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 3.3e-50 201.8 140 75.7
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 4.3e-50 201.4 138 76.1
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 5.7e-50 201.1 140 73.6
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 9.7e-50 200.3 141 73.8
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 1.3e-49 199.9 140 74.3
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 1.3e-49 199.9 140 74.3
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.6e-49 199.5 141 75.9
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 1.6e-49 199.5 141 75.9
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 2.2e-49 199.1 141 74.5
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 2.8e-49 198.7 141 71.6
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 2.8e-49 198.7 141 73.8
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 3.7e-49 198.4 141 75.2
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 4.8e-49 198.0 140 75.7
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 6.3e-49 197.6 142 75.4
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 6.3e-49 197.6 140 74.3
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 6.3e-49 197.6 141 74.5
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 1.1e-48 196.8 139 74.1
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 1.1e-48 196.8 139 74.1
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 1.1e-48 196.8 139 74.1
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 1.1e-48 196.8 139 74.1
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 1.1e-48 196.8 139 74.1
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 1.8e-48 196.1 141 73.8
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 1.8e-48 196.1 141 73.8
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.8e-48 196.1 138 77.5
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 2.4e-48 195.7 141 74.5
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 3.1e-48 195.3 141 73.0
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 4.1e-48 194.9 142 72.5
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 4.1e-48 194.9 139 72.7
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 4.1e-48 194.9 135 77.0
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 5.3e-48 194.5 140 72.9
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 5.3e-48 194.5 141 73.0
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 6.9e-48 194.1 141 73.0
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 6.9e-48 194.1 142 72.5
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 6.9e-48 194.1 141 73.0
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 6.9e-48 194.1 141 73.0
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 6.9e-48 194.1 142 72.5
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 6.9e-48 194.1 142 71.8
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 9.0e-48 193.7 142 71.8
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 1.2e-47 193.4 142 71.8
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 1.2e-47 193.4 142 71.8
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.2e-47 193.4 155 69.7
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.2e-47 193.4 139 75.5
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 1.5e-47 193.0 142 71.8
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 1.5e-47 193.0 141 71.6
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.5e-47 193.0 139 72.7
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 1.5e-47 193.0 145 73.8
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 1.5e-47 193.0 140 71.4
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 2.0e-47 192.6 142 71.1
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 2.0e-47 192.6 142 71.1
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 2.6e-47 192.2 141 71.6
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 2.6e-47 192.2 142 69.7
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 2.6e-47 192.2 140 73.6
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 3.4e-47 191.8 141 70.9
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 4.5e-47 191.4 141 75.2
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 4.5e-47 191.4 142 73.2
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 7.7e-47 190.7 139 71.9
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.0e-46 190.3 139 71.2
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 1.7e-46 189.5 141 75.2
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 2.2e-46 189.1 141 71.6
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 3.8e-46 188.3 144 69.4
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 6.5e-46 187.6 140 71.4
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 1.1e-45 186.8 139 71.2
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 1.9e-45 186.0 140 70.0
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 2.5e-45 185.7 139 74.8
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 9.4e-45 183.7 138 66.7
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 9.4e-45 183.7 140 69.3
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 9.4e-45 183.7 140 69.3
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 1.2e-44 183.3 139 71.2
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 2.7e-44 182.2 134 71.6
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 2.7e-44 182.2 140 69.3
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 4.6e-44 181.4 141 69.5
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 7.9e-44 180.6 139 66.9
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 1.4e-43 179.9 133 69.9
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 3.9e-43 178.3 133 69.2
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 6.7e-43 177.6 140 67.9
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 6.7e-43 177.6 133 69.9
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.0e-42 176.0 140 65.0
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.8e-41 172.2 138 65.9
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 2.4e-40 169.1 139 69.8
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 4.5e-39 164.9 137 61.3
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.0e-38 163.7 109 73.4
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.3e-38 163.3 152 64.5
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 1.7e-38 162.9 138 66.7
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 1.2e-36 156.8 138 60.1
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 1.4e-35 153.3 123 63.4
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 1.8e-35 152.9 160 60.0
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 1.8e-35 152.9 117 68.4
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 3.0e-35 152.1 140 61.4
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 5.1e-35 151.4 88 84.1
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 2.0e-34 149.4 116 62.9
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 3.3e-34 148.7 147 56.5
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.4e-32 142.5 115 68.7
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.2e-31 140.2 140 57.1
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.7e-30 136.3 140 60.0
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 3.8e-30 135.2 120 59.2
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 6.5e-30 134.4 147 54.4
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 1.9e-29 132.9 140 52.9
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.5e-29 132.5 141 56.7
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.4e-27 126.7 130 56.9
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 3.9e-27 125.2 90 74.4
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 2.2e-25 119.4 89 74.2
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 1.3e-22 110.2 89 65.2
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 1.9e-21 106.3 67 73.1
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 1.2e-20 103.6 53 90.6
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 3.6e-20 102.1 142 42.3
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 6.1e-20 101.3 79 73.4
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 2.3e-19 99.4 138 46.4
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 4.8e-17 91.7 73 68.5
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 1.1e-16 90.5 132 50.0
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 9.1e-16 87.4 73 61.6


User provided reference genes

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