Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 2.0e-251 872.1 473 100.0
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 1.3e-130 470.7 413 69.0
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 7.5e-126 454.9 351 74.9
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 2.2e-109 400.2 401 60.1
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 2.1e-104 383.6 376 62.5
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 2.9e-101 373.2 385 59.5
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 1.1e-100 371.3 388 57.2
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 2.0e-94 350.5 399 56.9
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 1.6e-91 340.9 412 56.1
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 4.0e-87 326.2 396 54.8
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 3.7e-72 276.6 382 52.6
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 3.5e-67 260.0 249 63.1
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 1.8e-66 257.7 383 46.5
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 1.9e-65 254.2 381 47.0
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 1.5e-62 244.6 378 46.3
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 5.0e-61 239.6 383 44.1
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 4.2e-60 236.5 236 62.7
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 4.2e-60 236.5 230 66.1
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 1.4e-58 231.5 380 43.4
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 3.0e-58 230.3 419 41.1
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 3.9e-58 229.9 381 42.8
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 8.8e-58 228.8 419 40.8
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 8.8e-58 228.8 419 40.8
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 1.1e-57 228.4 406 41.4
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 2.0e-57 227.6 381 40.7
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 7.4e-57 225.7 408 40.9
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 7.4e-57 225.7 412 40.8
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 2.8e-56 223.8 388 42.5
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 4.8e-56 223.0 366 42.6
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 1.1e-55 221.9 366 42.3
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 1.1e-55 221.9 383 42.6
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 1.5e-54 218.0 404 40.3
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 2.6e-54 217.2 366 43.2
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 1.7e-53 214.5 380 40.5
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 1.7e-53 214.5 379 41.4
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 1.7e-53 214.5 399 41.6
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 1.1e-52 211.8 375 41.3
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.9e-52 211.1 280 52.5
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 2.7e-51 207.2 381 42.0
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 4.7e-51 206.5 381 41.2
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 2.3e-50 204.1 419 37.2
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 3.0e-50 203.8 230 53.5
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 1.1e-49 201.8 224 54.0
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 1.5e-49 201.4 242 52.9
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 5.7e-49 199.5 402 36.6
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 1.7e-48 198.0 381 40.7
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 3.7e-48 196.8 249 51.4
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 4.1e-47 193.4 404 38.4
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 5.9e-46 189.5 368 39.7
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 1.1e-44 185.3 392 37.2
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 2.5e-44 184.1 387 37.5
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 2.1e-43 181.0 348 40.8
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 2.1e-43 181.0 390 36.9
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 3.6e-43 180.3 359 36.5
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 4.7e-43 179.9 381 38.1
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 6.1e-43 179.5 191 57.1
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 1.0e-42 178.7 407 38.3
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.4e-42 178.3 326 37.1
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 2.3e-42 177.6 230 51.7
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 3.0e-42 177.2 400 37.0
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 6.7e-42 176.0 380 35.3
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 6.7e-42 176.0 397 36.8
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 8.8e-42 175.6 400 34.8
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 1.5e-41 174.9 366 35.2
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 2.6e-41 174.1 383 37.1
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 7.4e-41 172.6 390 36.7
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 2.8e-40 170.6 402 36.8
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 4.8e-40 169.9 412 35.7
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.1e-39 168.7 377 34.5
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 1.4e-39 168.3 365 35.6
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 1.8e-39 167.9 391 35.0
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 3.1e-39 167.2 368 38.3
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 4.1e-39 166.8 240 46.2
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 2.0e-38 164.5 385 36.1
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 2.0e-38 164.5 159 61.0
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 3.5e-38 163.7 418 36.6
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 4.5e-38 163.3 359 34.3
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.0e-37 162.2 242 46.3
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 1.3e-37 161.8 385 34.3
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 1.3e-37 161.8 266 41.7
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 2.9e-37 160.6 261 42.1
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 3.8e-37 160.2 402 33.1
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 8.5e-37 159.1 396 33.3
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 4.2e-36 156.8 371 33.4
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 1.6e-35 154.8 399 33.8
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 5.2e-34 149.8 421 31.8
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 1.5e-33 148.3 130 66.2
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 1.5e-33 148.3 361 32.4
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 1.5e-33 148.3 391 32.7
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 1.5e-33 148.3 361 32.4
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 2.6e-33 147.5 252 40.1
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 2.2e-32 144.4 398 31.4
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 2.8e-32 144.1 228 45.2
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 1.1e-31 142.1 210 44.8
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 1.4e-31 141.7 384 31.2
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 1.8e-31 141.4 395 33.2
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 7.0e-31 139.4 155 56.1
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 2.7e-30 137.5 195 46.7
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 5.9e-30 136.3 231 38.5
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 5.0e-29 133.3 168 50.0
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 3.2e-28 130.6 381 30.4
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 5.5e-28 129.8 237 38.0
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 8.0e-27 125.9 276 37.7
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 1.7e-24 118.2 272 39.0
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 6.3e-24 116.3 240 37.5
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 7.0e-23 112.8 265 34.3
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 1.2e-22 112.1 250 36.4
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 6.6e-21 106.3 411 29.9
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 8.6e-21 105.9 106 56.6
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 1.1e-20 105.5 132 50.0
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 2.5e-20 104.4 247 34.8
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 9.5e-20 102.4 266 33.5
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 5.7e-17 93.2 204 37.3
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 9.8e-17 92.4 322 29.8
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 2.8e-16 90.9 401 30.7
Lalb_Chr10g0096921 Lupinus albus HOM05D005648 ORTHO05D007357 9.2e-15 85.9 70 60.0
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 7.8e-14 82.8 101 52.5
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 2.3e-13 81.3 91 51.6
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 6.8e-10 69.7 222 30.6
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.0e-09 68.2 84 45.2
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 1.3e-08 65.5 98 51.0
arahy.Tifrunner.gnm1.ann1.IDZ4EF Arachis hypogaea HOM05D005648 ORTHO05D007357 2.9e-08 64.3 152 30.9
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 8.3e-08 62.8 65 47.7
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 1.9e-07 61.6 99 40.4
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 4.1e-07 60.5 68 51.5
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 1.6e-06 58.5 74 47.3


User provided reference genes

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