Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10240 Trifolium pratense HOM05D007083 ORTHO05D008801 1.3e-41 175.3 114 100.0
Ca_20820_v3 Cicer arietinum L. HOM05D007083 ORTHO05D008801 4.2e-24 117.1 71 74.6
Glyma.12G048300 Glycine max HOM05D007083 ORTHO05D008801 1.9e-21 108.2 71 64.8
VMungo1383G2401 Vigna mungo HOM05D007083 ORTHO05D008801 3.3e-21 107.5 78 59.0
Phvul.001G085800 Phaseolus vulgaris HOM05D007083 ORTHO05D008801 4.3e-21 107.1 78 59.0
Lj3g0002320 Lotus japonicus HOM05D007083 ORTHO05D008801 5.6e-21 106.7 70 68.6
arahy.Tifrunner.gnm1.ann1.CNDX61 Arachis hypogaea HOM05D007083 ORTHO05D008801 1.3e-20 105.5 67 65.7
arahy.Tifrunner.gnm1.ann1.JD2ZC9 Arachis hypogaea HOM05D007083 ORTHO05D008801 1.3e-20 105.5 67 65.7
Medtr4g068360 Medicago truncatula HOM05D007083 ORTHO05D008801 6.2e-20 103.2 71 63.4
Manes.15G145600 Manihot esculenta HOM05D007083 ORTHO05D008801 9.9e-18 95.9 70 60.0
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 3.8e-17 94.0 70 60.0
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 4.9e-17 93.6 70 60.0
CSS0008892 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 6.4e-17 93.2 70 57.1
CSS0024065 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 6.4e-17 93.2 70 57.1
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 8.4e-17 92.8 70 60.0
QL11p039208 Quercus lobata HOM05D007083 ORTHO05D008801 1.1e-16 92.4 71 56.3
Lj2P412T37 Lonicera japonica HOM05D007083 ORTHO05D008801 1.4e-16 92.0 78 51.3
CiPaw.06G139300 Carya illinoinensis HOM05D007083 ORTHO05D008801 2.4e-16 91.3 71 56.3
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 3.2e-16 90.9 70 57.1
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 5.4e-16 90.1 78 52.6
CARHR106000 Cardamine hirsuta HOM05D007083 ORTHO05D008801 5.4e-16 90.1 70 58.6
GSVIVG01029769001 Vitis vinifera HOM05D007083 ORTHO05D008801 9.3e-16 89.4 71 53.5
Psat7g208080 Pisum sativum HOM05D007083 ORTHO05D008801 1.2e-15 89.0 49 79.6
Duzib052G0394 Durio zibethinus HOM05D007083 ORTHO05D008801 1.6e-15 88.6 70 52.9
Nitab4.5_0001401g0200 Nicotiana tabacum HOM05D007083 ORTHO05D008801 1.6e-15 88.6 70 57.1
Rhsim05G0078900 Rhododendron simsii HOM05D007083 ORTHO05D008801 1.6e-15 88.6 70 52.9
Thecc.02G028500 Theobroma cacao HOM05D007083 ORTHO05D008801 2.1e-15 88.2 71 52.1
Gohir.D12G042300 Gossypium hirsutum HOM05D007083 ORTHO05D008801 3.5e-15 87.4 70 52.9
Dinv23578 Davidia involucrata HOM05D007083 ORTHO05D008801 4.6e-15 87.0 70 52.9
Cc02_g18190 Coffea canephora HOM05D007083 ORTHO05D008801 6.0e-15 86.7 70 54.3
Gorai.008G044300 Gossypium raimondii HOM05D007083 ORTHO05D008801 6.0e-15 86.7 70 51.4
Nn7g35939 Nelumbo nucifera HOM05D007083 ORTHO05D008801 7.9e-15 86.3 70 52.9
Cpa.g.sc109.26 Carica papaya HOM05D007083 ORTHO05D008801 1.0e-14 85.9 70 52.9
Gohir.A12G030100 Gossypium hirsutum HOM05D007083 ORTHO05D008801 1.0e-14 85.9 70 52.9
Eucgr.J00091 Eucalyptus grandis HOM05D007083 ORTHO05D008801 1.3e-14 85.5 70 54.3
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 1.8e-14 85.1 71 53.5
AL3G47400 Arabidopsis lyrata HOM05D007083 ORTHO05D008801 2.3e-14 84.7 71 50.7
Haze_02465 Corylus avellana HOM05D007083 ORTHO05D008801 2.3e-14 84.7 71 52.1
Sc18g0004780 Simmondsia chinensis HOM05D007083 ORTHO05D008801 2.3e-14 84.7 70 52.9
AT2G15630 Arabidopsis thaliana HOM05D007083 ORTHO05D008801 3.0e-14 84.3 71 50.7
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 8.7e-14 82.8 71 47.9
Sabra04G0098000 Salix brachista HOM05D007083 ORTHO05D008801 8.7e-14 82.8 69 49.3
Potri.004G147700 Populus trichocarpa HOM05D007083 ORTHO05D008801 1.9e-13 81.6 69 49.3
BcaB03g14591 Brassica carinata HOM05D007083 ORTHO05D008801 2.5e-13 81.3 70 51.4
Sabra18G0050700 Salix brachista HOM05D007083 ORTHO05D008801 2.5e-13 81.3 69 49.3
Ah.01g019870 Amaranthus hybridus HOM05D007083 ORTHO05D008801 3.3e-13 80.9 69 52.2
TAR369G0752 Trochodendron aralioides HOM05D007083 ORTHO05D008801 3.3e-13 80.9 69 50.7
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 4.3e-13 80.5 67 52.2
EL10Ac9g21792 Beta vulgaris HOM05D007083 ORTHO05D008801 5.6e-13 80.1 69 47.8
Glyma.11G123700 Glycine max HOM05D007083 ORTHO05D008801 5.6e-13 80.1 71 52.1
Aa31LG8G13290 Aethionema arabicum HOM05D007083 ORTHO05D008801 9.6e-13 79.3 78 46.2
Ciclev10030406m.g Citrus clementina HOM05D007083 ORTHO05D008801 9.6e-13 79.3 71 47.9
CANSAT25G2501 Cannabis sativa HOM05D007083 ORTHO05D008801 1.3e-12 79.0 69 47.8
TWI31G0787 Tripterygium wilfordii HOM05D007083 ORTHO05D008801 1.3e-12 79.0 59 55.9
A07p05120 Brassica napus HOM05D007083 ORTHO05D008801 2.1e-12 78.2 71 50.7
Lsat_1_v5_gn_0_45320 Lactuca sativa HOM05D007083 ORTHO05D008801 2.1e-12 78.2 70 45.7
Lsat_1_v5_gn_5_117460 Lactuca sativa HOM05D007083 ORTHO05D008801 2.1e-12 78.2 70 45.7
Aqoxy7G03503 Aquilegia oxysepala HOM05D007083 ORTHO05D008801 2.8e-12 77.8 69 49.3
AUR62016660 Chenopodium quinoa HOM05D007083 ORTHO05D008801 2.8e-12 77.8 69 47.8
SHI08173 Sapria himalayana HOM05D007083 ORTHO05D008801 2.8e-12 77.8 71 46.5
HPP92_019625 Vanilla planifolia HOM05D007083 ORTHO05D008801 2.8e-12 77.8 62 58.1
AUR62011398 Chenopodium quinoa HOM05D007083 ORTHO05D008801 3.7e-12 77.4 70 45.7
MSTRG.5378 Avicennia marina HOM05D007083 ORTHO05D008801 4.8e-12 77.0 70 45.7
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 4.8e-12 77.0 71 49.3
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 4.8e-12 77.0 71 49.3
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 4.8e-12 77.0 71 49.3
Cfa004946 Carpinus fangiana HOM05D007083 ORTHO05D008801 6.2e-12 76.6 68 48.5
BraA07t28306Z Brassica rapa HOM05D007083 ORTHO05D008801 8.1e-12 76.3 71 49.3
RcHm_v2.0_Chr2g0124591 Rosa chinensis HOM05D007083 ORTHO05D008801 1.1e-11 75.9 62 51.6
Sc18g0004860 Simmondsia chinensis HOM05D007083 ORTHO05D008801 1.4e-11 75.5 70 47.1
FAN20G1975 Fragaria x ananassa HOM05D007083 ORTHO05D008801 2.4e-11 74.7 69 43.5
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 2.4e-11 74.7 71 45.1
DCAR_003627 Daucus carota HOM05D007083 ORTHO05D008801 6.9e-11 73.2 69 50.7
HanXRQChr12g0374971 Helianthus annuus HOM05D007083 ORTHO05D008801 4.5e-10 70.5 71 39.4
MBI19_g17433_MAGBIO Magnolia biondii HOM05D007083 ORTHO05D008801 4.5e-10 70.5 70 45.7
Actinidia17838 Actinidia chinensis HOM05D007083 ORTHO05D008801 9.9e-10 69.3 50 56.0
Potri.009G109001 Populus trichocarpa HOM05D007083 ORTHO05D008801 1.7e-09 68.6 64 45.3
CsaV3_7G010110 Cucumis sativus L. HOM05D007083 ORTHO05D008801 2.9e-09 67.8 56 51.8
ATR0598G052 Amborella trichopoda HOM05D007083 ORTHO05D008801 3.8e-09 67.4 67 44.8
RcHm_v2.0_Chr6g0259961 Rosa chinensis HOM05D007083 ORTHO05D008801 3.8e-09 67.4 59 47.5
Atru.chr5.2875 Acer truncatum HOM05D007083 ORTHO05D008801 4.9e-09 67.0 52 51.9
MELO3C018417.2 Cucumis melo HOM05D007083 ORTHO05D008801 4.9e-09 67.0 56 53.6
Cc05_g02580 Coffea canephora HOM05D006931 ORTHO05D008782 1.1e-08 65.9 62 51.6
FvH4_2g07360 Fragaria vesca HOM05D007083 ORTHO05D008801 1.9e-08 65.1 62 40.3
FAN24G0977 Fragaria x ananassa HOM05D007083 ORTHO05D008801 1.9e-08 65.1 62 40.3
PSO384G4964 Papaver somniferum HOM05D007083 ORTHO05D008801 2.4e-08 64.7 63 46.0
ECA236G1626 Erigeron canadensis HOM05D007083 ORTHO05D008801 5.5e-08 63.5 70 38.6
PSO339G4029 Papaver somniferum HOM05D007083 ORTHO05D008801 1.2e-07 62.4 65 43.1
Carub.0003s2940 Capsella rubella HOM05D007083 ORTHO05D008801 1.6e-07 62.0 47 55.3
Atru.chr13.1400 Acer truncatum HOM05D007083 ORTHO05D008801 3.5e-07 60.8 59 44.1
Duzib133G1060 Durio zibethinus HOM05D006931 ORTHO05D008782 6.0e-07 60.1 62 46.8
TAR629G3292 Trochodendron aralioides HOM05D006931 ORTHO05D008782 7.9e-07 59.7 62 43.5
Gohir.A04G119800 Gossypium hirsutum HOM05D006931 ORTHO05D008782 1.3e-06 58.9 62 46.8
Gohir.D04G161400 Gossypium hirsutum HOM05D006931 ORTHO05D008782 1.3e-06 58.9 62 46.8
Gorai.012G149400 Gossypium raimondii HOM05D006931 ORTHO05D008782 1.3e-06 58.9 62 46.8
MBI19_g25579_MAGBIO Magnolia biondii HOM05D006931 ORTHO05D008782 1.8e-06 58.5 62 45.2
SalBow3G3241 Salvia bowleyana HOM05D001193 ORTHO05D001016 1.8e-06 58.5 56 44.6
Lj8P135T27 Lonicera japonica HOM05D006931 ORTHO05D008782 2.3e-06 58.2 62 43.5
Atru.chr6.3406 Acer truncatum HOM05D006931 ORTHO05D008782 3.0e-06 57.8 63 41.3
Eucgr.G01771 Eucalyptus grandis HOM05D006931 ORTHO05D008782 3.0e-06 57.8 57 45.6
HanXRQChr17g0537601 Helianthus annuus HOM05D006931 ORTHO05D008782 3.0e-06 57.8 65 43.1
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 3.0e-06 57.8 63 44.4
ATR0829G035 Amborella trichopoda HOM05D007455 ORTHO05D009431 3.9e-06 57.4 63 38.1
HanXRQChr04g0126531 Helianthus annuus HOM05D006931 ORTHO05D008782 5.1e-06 57.0 65 43.1
MBI19_g25580_MAGBIO Magnolia biondii HOM05D006931 ORTHO05D008782 5.1e-06 57.0 62 43.5
ClCG02G009270 Citrullus lanatus HOM05D006931 ORTHO05D008782 6.7e-06 56.6 62 45.2
Dinv26621 Davidia involucrata HOM05D006931 ORTHO05D008782 6.7e-06 56.6 62 41.9
Lj3g0013378 Lotus japonicus HOM05D006931 ORTHO05D008782 6.7e-06 56.6 70 40.0
Lj3g0024796 Lotus japonicus HOM05D006931 ORTHO05D008782 6.7e-06 56.6 70 40.0
Nn3g20375 Nelumbo nucifera HOM05D006931 ORTHO05D008782 6.7e-06 56.6 62 43.5
Ca_06217_v3 Cicer arietinum L. HOM05D007455 ORTHO05D009431 8.7e-06 56.2 71 33.8
Lsat_1_v5_gn_2_33981 Lactuca sativa HOM05D001522 ORTHO05D008782 8.7e-06 56.2 70 42.9
SalBow1G4479 Salvia bowleyana HOM05D006931 ORTHO05D008782 8.7e-06 56.2 62 41.9
SHI10148 Sapria himalayana HOM05D006931 ORTHO05D008782 8.7e-06 56.2 62 43.5
Sed0019973 Sechium edule HOM05D006931 ORTHO05D008782 8.7e-06 56.2 62 43.5


User provided reference genes

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