Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1019 Trifolium pratense HOM05D004718 ORTHO05D005838 5.3e-292 1006.9 492 100.0
Medtr1g010040 Medicago truncatula HOM05D004718 ORTHO05D005838 1.0e-250 869.8 494 87.7
Ca_12884_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 1.8e-247 859.0 494 86.0
Psat6g031760 Pisum sativum HOM05D004718 ORTHO05D005838 8.7e-234 813.5 491 81.9
Lj5g0017014 Lotus japonicus HOM05D004718 ORTHO05D005838 1.6e-227 792.7 494 79.1
Glyma.14G132500 Glycine max HOM05D004718 ORTHO05D005838 4.8e-224 781.2 494 78.5
arahy.Tifrunner.gnm1.ann1.N8XBBJ Arachis hypogaea HOM05D004718 ORTHO05D005838 7.1e-220 767.3 494 77.3
arahy.Tifrunner.gnm1.ann1.7TNR6F Arachis hypogaea HOM05D004718 ORTHO05D005838 3.9e-218 761.5 494 76.7
Glyma.17G201000 Glycine max HOM05D004718 ORTHO05D005838 1.4e-215 753.1 494 76.7
Glyma.04G074300 Glycine max HOM05D004718 ORTHO05D005838 1.3e-210 736.5 492 75.0
Glyma.06G075500 Glycine max HOM05D004718 ORTHO05D005838 1.8e-210 736.1 492 74.0
Lalb_Chr14g0362131 Lupinus albus HOM05D004718 ORTHO05D005838 1.1e-209 733.4 494 74.5
Phvul.009G100000 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 3.7e-208 728.4 494 72.7
VMungo1309G0968 Vigna mungo HOM05D004718 ORTHO05D005838 6.2e-208 727.6 494 73.3
Lalb_Chr08g0243651 Lupinus albus HOM05D004718 ORTHO05D005838 2.6e-206 722.2 495 73.5
Medtr3g108660 Medicago truncatula HOM05D004718 ORTHO05D005838 1.0e-205 720.3 494 73.1
TPR.G12432 Trifolium pratense HOM05D004718 ORTHO05D005838 3.8e-205 718.4 494 73.3
Psat5g025880 Pisum sativum HOM05D004718 ORTHO05D005838 4.3e-201 704.9 496 71.6
Phvul.001G057700 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 9.7e-201 703.7 497 71.2
Ca_15681_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 1.1e-199 700.3 494 70.9
Atru.chr12.843 Acer truncatum HOM05D004718 ORTHO05D005838 3.6e-171 605.5 494 62.1
VMungo0647G1764 Vigna mungo HOM05D004718 ORTHO05D005838 6.1e-171 604.7 525 60.8
MD15G1110500 Malus domestica HOM05D004718 ORTHO05D005838 1.0e-170 604.0 497 61.0
Prupe.1G462800 Prunus persica HOM05D004718 ORTHO05D005838 2.0e-169 599.7 497 60.4
QL12p024639 Quercus lobata HOM05D004718 ORTHO05D005838 1.8e-167 593.2 496 59.9
MD08G1133600 Malus domestica HOM05D004718 ORTHO05D005838 3.1e-167 592.4 497 61.0
FvH4_2g30650 Fragaria vesca HOM05D004718 ORTHO05D005838 1.3e-165 587.0 496 60.5
CANSAT25G2838 Cannabis sativa HOM05D004718 ORTHO05D005838 2.9e-165 585.9 497 59.2
RcHm_v2.0_Chr6g0312261 Rosa chinensis HOM05D004718 ORTHO05D005838 5.0e-165 585.1 497 59.8
PGR142G1098 Punica granatum HOM05D004718 ORTHO05D005838 3.2e-164 582.4 497 59.0
Potri.005G179500 Populus trichocarpa HOM05D004718 ORTHO05D005838 6.8e-162 574.7 497 58.8
COL.COLO4_18636 Corchorus olitorius HOM05D004718 ORTHO05D005838 1.2e-161 573.9 495 59.0
CiPaw.07G215000 Carya illinoinensis HOM05D004718 ORTHO05D005838 4.4e-161 572.0 497 59.4
Thecc.09G001900 Theobroma cacao HOM05D004718 ORTHO05D005838 7.5e-161 571.2 495 59.0
Gohir.D13G185401 Gossypium hirsutum HOM05D004718 ORTHO05D005838 9.8e-161 570.9 495 59.4
Gorai.013G211400 Gossypium raimondii HOM05D004718 ORTHO05D005838 3.7e-160 568.9 495 59.4
Manes.18G079200 Manihot esculenta HOM05D004718 ORTHO05D005838 8.3e-160 567.8 492 60.0
Duzib168G2024 Durio zibethinus HOM05D004718 ORTHO05D005838 1.1e-159 567.4 495 58.8
GSVIVG01035602001 Vitis vinifera HOM05D004718 ORTHO05D005838 1.4e-159 567.0 498 59.4
Haze_21689 Corylus avellana HOM05D004718 ORTHO05D005838 2.4e-159 566.2 463 62.0
Gohir.A13G181900 Gossypium hirsutum HOM05D004718 ORTHO05D005838 2.4e-159 566.2 495 59.0
TWI32G0049 Tripterygium wilfordii HOM05D004718 ORTHO05D005838 5.4e-159 565.1 497 59.2
Dinv09445 Davidia involucrata HOM05D004718 ORTHO05D005838 7.0e-159 564.7 497 59.0
Nn8g40158 Nelumbo nucifera HOM05D004718 ORTHO05D005838 1.2e-158 563.9 500 57.6
MELO3C011203.2 Cucumis melo HOM05D004718 ORTHO05D005838 1.7e-157 560.1 497 58.6
CsaV3_2G031540 Cucumis sativus L. HOM05D004718 ORTHO05D005838 1.7e-157 560.1 497 58.6
TAR624G0199 Trochodendron aralioides HOM05D004718 ORTHO05D005838 1.7e-157 560.1 496 58.3
FAN20G1074 Fragaria x ananassa HOM05D003231 ORTHO05D005838 2.3e-157 559.7 471 59.7
Sed0007031 Sechium edule HOM05D004718 ORTHO05D005838 1.4e-154 550.4 497 57.9
Potri.002G081600 Populus trichocarpa HOM05D004718 ORTHO05D005838 1.5e-153 547.0 496 56.0
Sed0011780 Sechium edule HOM05D004718 ORTHO05D005838 2.0e-153 546.6 498 58.0
CSS0022336 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 2.6e-153 546.2 497 57.3
Sc06g0001390 Simmondsia chinensis HOM05D004718 ORTHO05D005838 4.4e-153 545.4 498 58.6
CSS0012298 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 5.7e-153 545.0 497 57.1
Ciclev10007306m.g Citrus clementina HOM05D004718 ORTHO05D005838 5.7e-153 545.0 496 56.7
Aqoxy7G00911 Aquilegia oxysepala HOM05D004718 ORTHO05D005838 6.3e-152 541.6 499 55.9
Rhsim04G0220700 Rhododendron simsii HOM05D004718 ORTHO05D005838 1.8e-151 540.0 498 57.0
TPR.G36582 Trifolium pratense HOM05D004718 ORTHO05D005838 2.4e-151 539.7 484 59.7
ClCG08G012790 Citrullus lanatus HOM05D004718 ORTHO05D005838 7.0e-151 538.1 497 57.1
Actinidia03322 Actinidia chinensis HOM05D004718 ORTHO05D005838 2.0e-150 536.6 495 56.8
ECA240G2491 Erigeron canadensis HOM05D004718 ORTHO05D005838 1.3e-149 533.9 498 54.0
Lj7A755G38 Lonicera japonica HOM05D004718 ORTHO05D005838 2.3e-149 533.1 491 56.0
EL10Ac2g03649 Beta vulgaris HOM05D004718 ORTHO05D005838 3.9e-149 532.3 498 57.2
PSO421G0298 Papaver somniferum HOM05D004718 ORTHO05D005838 6.6e-149 531.6 497 55.7
THA.LOC104799000 Tarenaya hassleriana HOM05D004718 ORTHO05D005838 5.6e-148 528.5 494 55.7
Cc07_g17410 Coffea canephora HOM05D004718 ORTHO05D005838 3.1e-146 522.7 499 53.7
A06p18130 Brassica napus HOM05D004718 ORTHO05D005838 1.2e-145 520.8 495 55.2
Sabra02G0063900 Salix brachista HOM05D004718 ORTHO05D005838 1.2e-145 520.8 518 52.9
BraA06t24901Z Brassica rapa HOM05D004718 ORTHO05D005838 2.6e-145 519.6 495 54.9
Sp5g12510 Schrenkiella parvula HOM05D004718 ORTHO05D005838 2.6e-145 519.6 494 54.5
HanXRQChr03g0082331 Helianthus annuus HOM05D004718 ORTHO05D005838 3.4e-145 519.2 501 53.3
C08p24600 Brassica napus HOM05D004718 ORTHO05D005838 5.8e-145 518.5 492 54.9
CAN.G30.25 Capsicum annuum HOM05D004718 ORTHO05D005838 7.5e-145 518.1 496 53.0
AUR62028027 Chenopodium quinoa HOM05D004718 ORTHO05D005838 9.8e-145 517.7 498 56.4
BcaB01g00691 Brassica carinata HOM05D004718 ORTHO05D005838 1.3e-144 517.3 492 54.9
BcaC07g39424 Brassica carinata HOM05D004718 ORTHO05D005838 1.3e-144 517.3 492 54.5
AUR62020697 Chenopodium quinoa HOM05D004718 ORTHO05D005838 3.7e-144 515.8 498 56.4
Peaxi162Scf00583g00537 Petunia axillaris HOM05D004718 ORTHO05D005838 8.3e-144 514.6 493 53.5
AL5G29440 Arabidopsis lyrata HOM05D004718 ORTHO05D005838 1.1e-143 514.2 494 54.5
Hma1.2p1_0147F.1_g065850 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 1.4e-143 513.8 492 54.3
A06p28290 Brassica napus HOM05D004718 ORTHO05D005838 1.9e-143 513.5 494 53.6
DCAR_000697 Daucus carota HOM05D004718 ORTHO05D005838 1.9e-143 513.5 515 53.8
BolC8t50076H Brassica oleracea HOM05D004718 ORTHO05D005838 5.4e-143 511.9 492 54.5
BraA06t25772Z Brassica rapa HOM05D004718 ORTHO05D005838 7.0e-143 511.5 494 53.4
Thhalv10010085m.g Eutrema salsugineum HOM05D004718 ORTHO05D005838 7.0e-143 511.5 494 53.4
Nitab4.5_0000964g0050 Nicotiana tabacum HOM05D004718 ORTHO05D005838 1.2e-142 510.8 484 53.5
PGSC0003DMG402018450 Solanum tuberosum HOM05D004718 ORTHO05D005838 1.6e-142 510.4 496 53.4
AT3G49600 Arabidopsis thaliana HOM05D004718 ORTHO05D005838 2.0e-142 510.0 496 53.6
MSTRG.2684 Avicennia marina HOM05D004718 ORTHO05D005838 2.0e-142 510.0 497 53.9
Migut.H01115 Erythranthe guttata HOM05D004718 ORTHO05D005838 4.6e-142 508.8 494 54.0
Solyc03g078390.3 Solanum lycopersicum HOM05D004718 ORTHO05D005838 4.6e-142 508.8 495 53.1
Oeu047653.1 Olea europaea HOM05D004718 ORTHO05D005838 6.0e-142 508.4 496 53.6
Sopen03g021200 Solanum pennellii HOM05D004718 ORTHO05D005838 6.0e-142 508.4 495 52.9
Carub.0005s1593 Capsella rubella HOM05D004718 ORTHO05D005838 1.0e-141 507.7 493 54.2
Ah.11g044230 Amaranthus hybridus HOM05D004718 ORTHO05D005838 1.4e-138 497.3 496 55.2
MBI07_g41265_MAGBIO Magnolia biondii HOM05D004718 ORTHO05D005838 1.4e-138 497.3 495 54.5
SGA_v2.0_scaffold76G25169 Striga asiatica HOM05D004718 ORTHO05D005838 5.2e-138 495.4 519 51.4
PSO017G4020 Papaver somniferum HOM05D004718 ORTHO05D005838 2.6e-137 493.0 491 54.0
HPP92_023163 Vanilla planifolia HOM05D004718 ORTHO05D005838 6.4e-136 488.4 497 52.1
PSO063G2513 Papaver somniferum HOM05D004718 ORTHO05D005838 8.3e-136 488.0 491 54.0
Nitab4.5_0000004g0240 Nicotiana tabacum HOM05D004718 ORTHO05D005838 9.2e-135 484.6 478 52.1
Zm00001eb008340 Zea mays HOM05D004718 ORTHO05D005838 9.2e-135 484.6 496 52.2
Lsat_1_v5_gn_5_59280 Lactuca sativa HOM05D004718 ORTHO05D005838 4.3e-132 475.7 489 49.9
BcaB02g09597 Brassica carinata HOM05D004718 ORTHO05D005838 9.5e-132 474.6 488 52.3
Aa31LG4G18090 Aethionema arabicum HOM05D004718 ORTHO05D005838 4.7e-131 472.2 463 53.8
CDE06G1884 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 6.2e-131 471.9 495 50.9
Hund19371 Selenicereus undatus HOM05D004718 ORTHO05D005838 1.4e-127 460.7 497 50.1
CDE04G3074 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 3.2e-127 459.5 495 50.1
C03p65460 Brassica napus HOM05D004718 ORTHO05D005838 1.6e-126 457.2 495 51.1
ATR0006G074 Amborella trichopoda HOM05D004718 ORTHO05D005838 3.5e-126 456.1 491 49.9
Cpa.g.sc42.62 Carica papaya HOM05D004718 ORTHO05D005838 1.0e-125 454.5 451 54.1
FAN27G1892 Fragaria x ananassa HOM05D004718 ORTHO05D005838 5.6e-124 448.7 459 53.2
Zm00001eb310400 Zea mays HOM05D004718 ORTHO05D005838 9.5e-124 448.0 496 49.8
Eucgr.E04340 Eucalyptus grandis HOM05D004718 ORTHO05D005838 5.4e-119 432.2 462 50.2
RcHm_v2.0_Chr6g0312311 Rosa chinensis HOM05D004718 ORTHO05D005838 2.4e-106 390.2 315 58.7
Actinidia25724 Actinidia chinensis HOM05D004718 ORTHO05D005838 1.8e-101 374.0 489 43.6
Pp3c16_5610 Physcomitrium patens HOM05D004718 ORTHO05D005838 6.2e-99 365.5 509 41.5
CARHR158620 Cardamine hirsuta HOM05D004718 ORTHO05D005838 3.2e-95 353.2 327 54.4
Mapoly0015s0043 Marchantia polymorpha HOM05D004718 ORTHO05D005838 2.1e-94 350.5 518 38.8
PSO541G2610 Papaver somniferum HOM05D004718 ORTHO05D005838 1.3e-88 331.3 390 46.4
Hma1.2p1_0147F.1_g065870 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 2.9e-88 330.1 328 49.7
Hma1.2p1_2965F.1_g330973 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 2.9e-88 330.1 328 49.7
AL8G22480 Arabidopsis lyrata HOM05D004718 ORTHO05D005838 3.7e-83 313.2 300 53.7
SMO367G0705 Selaginella moellendorffii HOM05D004718 ORTHO05D005838 2.9e-80 303.5 470 37.2
BcaC01g02422 Brassica carinata HOM05D004718 ORTHO05D005838 1.9e-79 300.8 245 60.0
CBR_g19585 Chara braunii HOM05D004718 ORTHO05D005838 1.2e-73 281.6 540 32.2
PSO782G5635 Papaver somniferum HOM05D004718 ORTHO05D005838 6.3e-67 259.2 450 37.3
vmacro12747 Vaccinium macrocarpon HOM05D004718 ORTHO05D005838 2.0e-65 254.2 226 56.6
unitig_699.g19717 Utricularia gibba HOM05D004718 ORTHO05D005838 9.4e-63 245.4 268 46.6
SEGI_37293 Sequoiadendron giganteum HOM05D004718 ORTHO05D005838 1.4e-58 231.5 252 45.2
unitig_699.g19716 Utricularia gibba HOM05D004718 ORTHO05D005838 1.3e-43 181.8 185 56.2
CARHR158610 Cardamine hirsuta HOM05D004718 ORTHO05D005838 1.0e-40 172.2 168 56.5
BcaC01g02421 Brassica carinata HOM05D004718 ORTHO05D005838 1.3e-40 171.8 177 52.0
SEGI_25158 Sequoiadendron giganteum HOM05D004718 ORTHO05D046641 2.0e-33 147.9 172 48.8
vmacro12746 Vaccinium macrocarpon HOM05D004718 ORTHO05D005838 5.0e-32 143.3 119 67.2
TPR.G27547 Trifolium pratense HOM05D004718 ORTHO05D005838 3.7e-27 127.1 101 68.3
Os03g0192900 Oryza sativa ssp. japonica HOM05D004718 ORTHO05D005838 8.1e-22 109.4 89 66.3
FAN17G1117 Fragaria x ananassa HOM05D004718 ORTHO05D046641 2.4e-18 97.8 106 48.1
Eucgr.E04341 Eucalyptus grandis HOM05D004718 ORTHO05D005838 5.2e-13 80.1 61 54.1
Cre01.g030450 Chlamydomonas reinhardtii HOM05D004718 ORTHO05D005838 3.2e-10 70.9 131 32.8
SEGI_25079 Sequoiadendron giganteum HOM05D004718 ORTHO05D015872 2.1e-09 68.2 83 49.4
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 9.6e-07 59.3 51 52.9


User provided reference genes

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