Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1013 Trifolium pratense HOM05D000200 ORTHO05D411601 1.9e-18 94.7 46 100.0
TPR.G16077 Trifolium pratense HOM05D000200 ORTHO05D000262 3.4e-15 84.0 43 93.0
Medtr1g069290 Medicago truncatula HOM05D000200 ORTHO05D000262 5.8e-15 83.2 43 90.7
Psat6g063800 Pisum sativum HOM05D000200 ORTHO05D000262 9.9e-15 82.4 43 90.7
TPR.G22854 Trifolium pratense HOM05D000200 ORTHO05D000262 9.9e-15 82.4 43 90.7
Phvul.007G155000 Phaseolus vulgaris HOM05D000200 ORTHO05D000262 1.7e-14 81.6 43 88.4
Ca_09632_v3 Cicer arietinum L. HOM05D000200 ORTHO05D000262 2.2e-14 81.3 43 88.4
arahy.Tifrunner.gnm1.ann1.8KS6DS Arachis hypogaea HOM05D000200 ORTHO05D000262 3.7e-14 80.5 43 86.0
arahy.Tifrunner.gnm1.ann1.SHPC4Z Arachis hypogaea HOM05D000200 ORTHO05D000262 3.7e-14 80.5 43 86.0
Glyma.10G041700 Glycine max HOM05D000200 ORTHO05D000262 3.7e-14 80.5 43 86.0
Glyma.13G128700 Glycine max HOM05D000200 ORTHO05D000262 3.7e-14 80.5 43 86.0
VMungo0720G0278 Vigna mungo HOM05D000200 ORTHO05D000262 3.7e-14 80.5 43 86.0
Lj5g0016610 Lotus japonicus HOM05D000200 ORTHO05D000262 1.4e-13 78.6 43 83.7
Lalb_Chr21g0314181 Lupinus albus HOM05D000200 ORTHO05D000262 1.4e-13 78.6 43 83.7
TPR.G22084 Trifolium pratense HOM05D000200 ORTHO05D412927 4.1e-13 77.0 38 94.7
Medtr7g099290 Medicago truncatula HOM05D000200 ORTHO05D000262 5.4e-13 76.6 43 81.4
Psat3g050400 Pisum sativum HOM05D000200 ORTHO05D000262 9.2e-13 75.9 43 81.4
CiPaw.03G273000 Carya illinoinensis HOM05D000200 ORTHO05D000262 7.8e-12 72.8 43 81.4
Eucgr.H00833 Eucalyptus grandis HOM05D000200 ORTHO05D000262 7.8e-12 72.8 44 79.5
QL09p043019 Quercus lobata HOM05D000200 ORTHO05D000262 1.3e-11 72.0 43 76.7
TPR.G30854 Trifolium pratense HOM05D000200 ORTHO05D000262 1.3e-11 72.0 43 76.7
Lalb_Chr01g0019451 Lupinus albus HOM05D000200 ORTHO05D000262 1.7e-11 71.6 43 76.7
Phvul.001G167900 Phaseolus vulgaris HOM05D000200 ORTHO05D000262 1.7e-11 71.6 43 79.1
Hund05505 Selenicereus undatus HOM05D000200 ORTHO05D000262 1.7e-11 71.6 44 77.3
CANSAT01G0471 Cannabis sativa HOM05D000200 ORTHO05D000262 2.3e-11 71.2 43 74.4
CANSAT01G2202 Cannabis sativa HOM05D000200 ORTHO05D000262 2.3e-11 71.2 43 74.4
Haze_24731 Corylus avellana HOM05D000200 ORTHO05D000262 3.9e-11 70.5 43 76.7
Duzib211G0550 Durio zibethinus HOM05D000200 ORTHO05D000262 3.9e-11 70.5 44 77.3
VMungo1383G2133 Vigna mungo HOM05D000200 ORTHO05D000262 3.9e-11 70.5 43 76.7
PGR083G1041 Punica granatum HOM05D000200 ORTHO05D000262 5.1e-11 70.1 44 77.3
Ca_08763_v3 Cicer arietinum L. HOM05D000200 ORTHO05D000262 6.6e-11 69.7 43 74.4
FvH4_2g20160 Fragaria vesca HOM05D000200 ORTHO05D000262 6.6e-11 69.7 43 72.1
FAN15G3174 Fragaria x ananassa HOM05D000200 ORTHO05D000262 6.6e-11 69.7 43 72.1
FAN24G1990 Fragaria x ananassa HOM05D000200 ORTHO05D000262 6.6e-11 69.7 43 72.1
Potri.002G254300 Populus trichocarpa HOM05D000200 ORTHO05D000262 6.6e-11 69.7 44 72.7
RcHm_v2.0_Chr6g0285891 Rosa chinensis HOM05D000200 ORTHO05D000262 6.6e-11 69.7 43 72.1
THA.LOC104814540 Tarenaya hassleriana HOM05D000200 ORTHO05D000262 6.6e-11 69.7 44 77.3
FAN27G2640 Fragaria x ananassa HOM05D000200 ORTHO05D000262 8.6e-11 69.3 43 69.8
Glyma.03G169500 Glycine max HOM05D000200 ORTHO05D000262 8.6e-11 69.3 43 76.7
Oeu039645.1 Olea europaea HOM05D000200 ORTHO05D000262 8.6e-11 69.3 43 74.4
Thecc.01G246200 Theobroma cacao HOM05D000200 ORTHO05D000262 8.6e-11 69.3 44 77.3
Lalb_Chr02g0152891 Lupinus albus HOM05D000200 ORTHO05D000262 1.1e-10 68.9 43 72.1
MD05G1184900 Malus domestica HOM05D000200 ORTHO05D000262 1.1e-10 68.9 43 74.4
Prupe.8G211100 Prunus persica HOM05D000200 ORTHO05D000262 1.1e-10 68.9 43 74.4
Rhsim01G0259100 Rhododendron simsii HOM05D000200 ORTHO05D000262 1.1e-10 68.9 44 77.3
Sc05g0002540 Simmondsia chinensis HOM05D000200 ORTHO05D000262 1.1e-10 68.9 44 77.3
CSS0034388 Camellia sinensis var. sinensis HOM05D000200 ORTHO05D000262 1.9e-10 68.2 44 77.3
CsaV3_6G007240 Cucumis sativus L. HOM05D000200 ORTHO05D000262 1.9e-10 68.2 43 74.4
Manes.13G041800 Manihot esculenta HOM05D000200 ORTHO05D000262 1.9e-10 68.2 44 75.0
Sabra02G0193400 Salix brachista HOM05D000200 ORTHO05D000262 1.9e-10 68.2 43 72.1
Sed0008752 Sechium edule HOM05D000200 ORTHO05D000262 1.9e-10 68.2 42 71.4
unitig_85.g27271 Utricularia gibba HOM05D000200 ORTHO05D000262 1.9e-10 68.2 44 70.5
Gohir.A08G192400 Gossypium hirsutum HOM05D000200 ORTHO05D000262 2.5e-10 67.8 44 75.0
Gohir.D08G210400 Gossypium hirsutum HOM05D000200 ORTHO05D000262 2.5e-10 67.8 44 75.0
Gorai.004G223100 Gossypium raimondii HOM05D000200 ORTHO05D000262 2.5e-10 67.8 44 75.0
Lsat_1_v5_gn_5_180001 Lactuca sativa HOM05D000200 ORTHO05D000262 2.5e-10 67.8 43 72.1
THA.LOC104804032 Tarenaya hassleriana HOM05D000200 ORTHO05D000262 2.5e-10 67.8 44 72.7
MD10G1172900 Malus domestica HOM05D000200 ORTHO05D000262 4.3e-10 67.0 43 72.1
GSVIVG01028469001 Vitis vinifera HOM05D000200 ORTHO05D000262 4.3e-10 67.0 44 75.0
CAN.G260.1 Capsicum annuum HOM05D000200 ORTHO05D000262 5.6e-10 66.6 43 72.1
DCAR_012616 Daucus carota HOM05D000200 ORTHO05D000262 5.6e-10 66.6 44 72.7
DCAR_018532 Daucus carota HOM05D000200 ORTHO05D000262 5.6e-10 66.6 44 72.7
Dinv43045 Davidia involucrata HOM05D000200 ORTHO05D000262 5.6e-10 66.6 44 75.0
Manes.12G039700 Manihot esculenta HOM05D000200 ORTHO05D000262 5.6e-10 66.6 44 72.7
Sed0000280 Sechium edule HOM05D000200 ORTHO05D000262 5.6e-10 66.6 42 73.8
THA.LOC104801116 Tarenaya hassleriana HOM05D000200 ORTHO05D000262 5.6e-10 66.6 44 72.7
vmacro14783 Vaccinium macrocarpon HOM05D000200 ORTHO05D000262 5.6e-10 66.6 44 75.0
ECA248G0139 Erigeron canadensis HOM05D000200 ORTHO05D000262 7.3e-10 66.2 43 69.8
Glyma.19G170700 Glycine max HOM05D000200 ORTHO05D000262 7.3e-10 66.2 43 72.1
Gohir.D11G140700 Gossypium hirsutum HOM05D000200 ORTHO05D000262 7.3e-10 66.2 44 75.0
Gorai.007G150900 Gossypium raimondii HOM05D000200 ORTHO05D000262 7.3e-10 66.2 44 75.0
Ah.08g213780 Amaranthus hybridus HOM05D000200 ORTHO05D000262 9.5e-10 65.9 43 69.8
Cpa.g.sc87.70 Carica papaya HOM05D000200 ORTHO05D000262 9.5e-10 65.9 44 75.0
ClCG06G001310 Citrullus lanatus HOM05D000200 ORTHO05D000262 9.5e-10 65.9 43 72.1
Ciclev10018480m.g Citrus clementina HOM05D000200 ORTHO05D000262 9.5e-10 65.9 44 72.7
MELO3C022403.2 Cucumis melo HOM05D000200 ORTHO05D000262 9.5e-10 65.9 43 72.1
Oeu052096.1 Olea europaea HOM05D000200 ORTHO05D000262 9.5e-10 65.9 44 72.7
MSTRG.12509 Avicennia marina HOM05D000200 ORTHO05D000262 1.2e-09 65.5 44 70.5
BcaB07g30994 Brassica carinata HOM05D000200 ORTHO05D000262 1.2e-09 65.5 44 72.7
BcaC04g21894 Brassica carinata HOM05D000200 ORTHO05D000262 1.2e-09 65.5 44 72.7
A09p20660 Brassica napus HOM05D000200 ORTHO05D000262 1.2e-09 65.5 44 72.7
C09p26080 Brassica napus HOM05D000200 ORTHO05D000262 1.2e-09 65.5 44 72.7
BolC9t55511H Brassica oleracea HOM05D000200 ORTHO05D000262 1.2e-09 65.5 44 72.7
BraA09t37670Z Brassica rapa HOM05D000200 ORTHO05D000262 1.2e-09 65.5 44 72.7
ECA247G1722 Erigeron canadensis HOM05D000200 ORTHO05D000262 1.2e-09 65.5 43 67.4
Solyc09g064200.4 Solanum lycopersicum HOM05D000200 ORTHO05D000262 1.2e-09 65.5 43 69.8
Sopen09g025420 Solanum pennellii HOM05D000200 ORTHO05D000262 1.2e-09 65.5 43 69.8
arahy.Tifrunner.gnm1.ann1.CGBE6F Arachis hypogaea HOM05D000200 ORTHO05D000262 1.6e-09 65.1 44 72.7
arahy.Tifrunner.gnm1.ann1.Q6MAYS Arachis hypogaea HOM05D000200 ORTHO05D000262 1.6e-09 65.1 44 72.7
BcaC06g31671 Brassica carinata HOM05D000200 ORTHO05D000262 1.6e-09 65.1 44 72.7
BolC7t43176H Brassica oleracea HOM05D000200 ORTHO05D000262 1.6e-09 65.1 44 72.7
AUR62008839 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.6e-09 65.1 44 70.5
HanXRQChr01g0014821 Helianthus annuus HOM05D000200 ORTHO05D000262 1.6e-09 65.1 43 67.4
MSTRG.17531 Avicennia marina HOM05D000200 ORTHO05D000262 2.1e-09 64.7 44 72.7
Dinv19254 Davidia involucrata HOM05D000200 ORTHO05D000262 2.1e-09 64.7 44 72.7
Sp2g08710 Schrenkiella parvula HOM05D000200 ORTHO05D000262 2.1e-09 64.7 44 72.7
PGSC0003DMG400022027 Solanum tuberosum HOM05D000200 ORTHO05D000262 2.1e-09 64.7 43 67.4
MSTRG.21451 Avicennia marina HOM05D000200 ORTHO05D000262 3.6e-09 63.9 44 72.7
Cc01_g17540 Coffea canephora HOM05D000200 ORTHO05D000262 3.6e-09 63.9 44 72.7
SGA_v2.0_scaffold1G00689 Striga asiatica HOM05D000200 ORTHO05D000262 3.6e-09 63.9 44 68.2
AT5G43900 Arabidopsis thaliana HOM05D000200 ORTHO05D000262 4.7e-09 63.5 44 70.5
Carub.0008s0469 Capsella rubella HOM05D000200 ORTHO05D000262 4.7e-09 63.5 44 70.5
Thhalv10003130m.g Eutrema salsugineum HOM05D000200 ORTHO05D000262 4.7e-09 63.5 44 70.5
Gohir.A11G134500 Gossypium hirsutum HOM05D000200 ORTHO05D000262 4.7e-09 63.5 44 72.7
TWI18G0133 Tripterygium wilfordii HOM05D000200 ORTHO05D000262 4.7e-09 63.5 44 70.5
Aa31LG2G21660 Aethionema arabicum HOM05D000200 ORTHO05D000262 6.2e-09 63.2 44 70.5
AL8G16230 Arabidopsis lyrata HOM05D000200 ORTHO05D000262 6.2e-09 63.2 44 70.5
Aa31LG5G3380 Aethionema arabicum HOM05D000200 ORTHO05D000262 8.1e-09 62.8 44 70.5
A06p47630 Brassica napus HOM05D000200 ORTHO05D000262 8.1e-09 62.8 44 70.5
BraA06t27631Z Brassica rapa HOM05D000200 ORTHO05D000262 8.1e-09 62.8 44 70.5
Peaxi162Scf00183g00011 Petunia axillaris HOM05D000200 ORTHO05D000262 1.1e-08 62.4 44 72.7
BcaC06g34611 Brassica carinata HOM05D000200 ORTHO05D000262 1.4e-08 62.0 44 70.5
C07p26470 Brassica napus HOM05D000200 ORTHO05D000262 1.4e-08 62.0 44 70.5
Migut.D00494 Erythranthe guttata HOM05D000200 ORTHO05D000262 1.4e-08 62.0 44 70.5
SGA_v2.0_scaffold42G16165 Striga asiatica HOM05D000200 ORTHO05D000262 1.4e-08 62.0 44 68.2
Migut.N02239 Erythranthe guttata HOM05D000200 ORTHO05D000262 1.8e-08 61.6 44 68.2
Solyc06g008090.3 Solanum lycopersicum HOM05D000200 ORTHO05D000262 1.8e-08 61.6 44 68.2
Sopen06g002900 Solanum pennellii HOM05D000200 ORTHO05D000262 1.8e-08 61.6 44 68.2
Sopen06g003000 Solanum pennellii HOM05D000200 ORTHO05D000262 1.8e-08 61.6 44 68.2
PGSC0003DMG400014709 Solanum tuberosum HOM05D000200 ORTHO05D000262 1.8e-08 61.6 44 68.2
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 3.1e-08 60.8 44 68.2
EL10Ac7g17739 Beta vulgaris HOM05D000200 ORTHO05D000262 4.0e-08 60.5 44 68.2
TWI75G0124 Tripterygium wilfordii HOM05D000200 ORTHO05D000262 4.0e-08 60.5 44 65.9
CAN.G941.32 Capsicum annuum HOM05D000200 ORTHO05D000262 8.9e-08 59.3 44 65.9
MSTRG.18368 Avicennia marina HOM05D000200 ORTHO05D000262 1.2e-07 58.9 43 67.4
CARHR179530 Cardamine hirsuta HOM05D000200 ORTHO05D000262 1.2e-07 58.9 44 63.6
Haze_24748 Corylus avellana HOM05D000200 ORTHO05D000262 1.2e-07 58.9 42 69.0
Nn1g03059 Nelumbo nucifera HOM05D000200 ORTHO05D000262 2.0e-07 58.2 45 66.7
Aqoxy1G02207 Aquilegia oxysepala HOM05D000200 ORTHO05D000262 2.6e-07 57.8 45 60.0
AL1G13760 Arabidopsis lyrata HOM05D000200 ORTHO05D000262 2.6e-07 57.8 44 65.9
Carub.0007s1193 Capsella rubella HOM05D000200 ORTHO05D000262 4.4e-07 57.0 44 63.6
COL.COLO4_35511 Corchorus olitorius HOM05D000200 ORTHO05D000262 4.4e-07 57.0 36 77.8
Nitab4.5_0003288g0010 Nicotiana tabacum HOM05D000200 ORTHO05D000262 4.4e-07 57.0 43 65.1
Sp1g02980 Schrenkiella parvula HOM05D000200 ORTHO05D000262 4.4e-07 57.0 44 63.6
Carub.0001s0331 Capsella rubella HOM05D000200 ORTHO05D000262 5.8e-07 56.6 44 63.6
Thhalv10006554m.g Eutrema salsugineum HOM05D000200 ORTHO05D000262 5.8e-07 56.6 44 63.6
Nn3g19838 Nelumbo nucifera HOM05D000200 ORTHO05D000262 5.8e-07 56.6 43 60.5
TAR633G1199 Trochodendron aralioides HOM05D000200 ORTHO05D000262 5.8e-07 56.6 45 66.7
Lsat_1_v5_gn_1_88981 Lactuca sativa HOM05D000200 ORTHO05D000452 1.3e-06 55.5 42 59.5
CARHR003500 Cardamine hirsuta HOM05D000200 ORTHO05D000262 1.7e-06 55.1 44 63.6
Dinv29779 Davidia involucrata HOM05D000200 ORTHO05D000262 2.2e-06 54.7 45 64.4
BcaNung01374 Brassica carinata HOM05D000200 ORTHO05D000262 2.9e-06 54.3 44 59.1
A01p09230 Brassica napus HOM05D000200 ORTHO05D000262 2.9e-06 54.3 44 59.1
C01p10810 Brassica napus HOM05D000200 ORTHO05D000262 2.9e-06 54.3 44 59.1
BolC1t01042H Brassica oleracea HOM05D000200 ORTHO05D000262 2.9e-06 54.3 44 59.1
BraA01t00866Z Brassica rapa HOM05D000200 ORTHO05D000262 2.9e-06 54.3 44 59.1
AT1G04160 Arabidopsis thaliana HOM05D000200 ORTHO05D000262 3.8e-06 53.9 44 59.1
PSO764G0301 Papaver somniferum HOM05D000200 ORTHO05D000262 3.8e-06 53.9 46 63.0
PSO832G2285 Papaver somniferum HOM05D000200 ORTHO05D000262 3.8e-06 53.9 46 63.0
CARHR236500 Cardamine hirsuta HOM05D000200 ORTHO05D000262 4.9e-06 53.5 47 57.4
Lalb_Chr20g0113391 Lupinus albus HOM05D000200 ORTHO05D000262 4.9e-06 53.5 43 62.8


User provided reference genes

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