Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 0.0e+00 1573.9 940 100.0
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 0.0e+00 1082.8 954 67.4
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 0.0e+00 1076.2 952 67.2
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 1.3e-311 1072.8 954 68.3
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 3.7e-310 1068.1 954 61.7
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 1.6e-308 1062.8 954 67.7
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 1.7e-307 1059.3 950 66.8
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 1.7e-307 1059.3 950 66.8
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 1.7e-302 1042.7 964 66.0
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 6.6e-299 1030.8 950 65.8
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 3.6e-297 1025.0 950 65.7
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 3.6e-297 1025.0 950 66.1
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 1.1e-296 1023.5 950 66.1
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 1.8e-296 1022.7 950 66.0
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 6.8e-296 1020.8 953 66.3
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 2.8e-273 945.7 970 58.4
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 1.3e-270 936.8 899 61.1
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 1.7e-270 936.4 970 53.9
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 3.8e-270 935.3 958 59.1
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 4.9e-270 934.9 965 59.7
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 6.4e-270 934.5 971 57.4
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 1.1e-269 933.7 906 57.9
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 3.2e-269 932.2 898 56.3
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 7.1e-269 931.0 960 59.9
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 1.6e-268 929.9 960 55.6
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 4.6e-268 928.3 959 54.5
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 1.3e-267 926.8 968 59.1
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 1.9e-266 922.9 951 56.7
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 1.9e-266 922.9 965 58.5
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 7.4e-266 921.0 952 60.0
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 7.4e-266 921.0 961 58.2
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 1.3e-265 920.2 979 53.3
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 8.1e-265 917.5 960 54.4
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 2.4e-264 916.0 961 59.5
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 6.9e-264 914.4 945 59.5
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 5.8e-263 911.4 947 55.6
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 7.6e-263 911.0 940 59.8
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 1.4e-261 906.7 948 56.0
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 1.4e-261 906.7 954 58.3
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 5.5e-261 904.8 1048 50.1
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 9.3e-261 904.0 944 59.6
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 1.6e-260 903.3 952 57.1
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 1.6e-260 903.3 981 50.8
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 6.0e-260 901.4 954 53.0
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 7.9e-260 901.0 974 52.3
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 7.9e-260 901.0 946 60.0
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 1.0e-259 900.6 960 52.4
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 1.3e-259 900.2 944 57.6
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 1.8e-259 899.8 969 52.5
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 1.8e-259 899.8 904 54.5
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 2.3e-259 899.4 887 55.2
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 3.0e-259 899.0 902 54.4
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 5.1e-259 898.3 888 61.0
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 5.1e-259 898.3 968 56.5
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 5.1e-259 898.3 947 60.7
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 2.5e-258 896.0 942 57.9
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 4.3e-258 895.2 951 53.0
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 4.3e-258 895.2 946 59.2
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 5.6e-258 894.8 968 56.5
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 1.3e-257 893.6 944 60.0
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 1.3e-257 893.6 897 61.2
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 4.0e-256 888.6 937 58.8
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 3.4e-255 885.6 943 59.2
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 4.5e-255 885.2 946 53.1
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 6.5e-254 881.3 829 59.1
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 2.5e-253 879.4 831 57.8
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 3.2e-253 879.0 948 53.2
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 6.0e-252 874.8 892 53.7
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 1.0e-251 874.0 950 53.1
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 1.3e-251 873.6 926 57.8
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 6.7e-251 871.3 893 54.8
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 1.1e-250 870.5 937 53.9
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 4.3e-250 868.6 929 51.1
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 1.3e-249 867.1 833 56.1
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 1.3e-249 867.1 1000 50.3
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 8.2e-249 864.4 968 56.9
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 4.1e-248 862.1 893 53.3
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 7.6e-247 857.8 906 57.4
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 1.7e-246 856.7 974 51.4
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 3.8e-246 855.5 954 52.7
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 1.1e-245 854.0 885 52.4
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 1.9e-245 853.2 920 53.2
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 4.2e-245 852.0 944 52.4
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 2.1e-244 849.7 953 52.2
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 5.1e-243 845.1 962 51.6
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 4.3e-242 842.0 958 51.3
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 1.6e-241 840.1 973 50.6
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 8.2e-241 837.8 938 52.8
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 3.1e-240 835.9 965 56.3
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 9.1e-240 834.3 958 49.9
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 7.7e-239 831.2 979 50.4
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 1.1e-237 827.4 975 54.1
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 5.1e-235 818.5 949 51.4
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 1.1e-226 790.8 937 49.2
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 2.0e-226 790.0 968 54.1
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 1.4e-224 783.9 950 47.8
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 1.9e-221 773.5 913 51.0
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 1.5e-218 763.8 966 48.1
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 9.4e-213 744.6 666 58.3
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 1.5e-194 684.1 777 50.3
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 5.9e-191 672.2 838 49.2
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 3.1e-187 659.8 825 48.5
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 6.2e-156 555.8 891 42.4
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 3.1e-155 553.5 853 45.5
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 8.4e-145 518.8 606 55.3
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 1.1e-136 491.9 824 46.5
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 1.3e-124 451.8 421 53.7
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 1.6e-119 434.9 813 40.5
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 1.7e-108 398.3 316 61.1
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 3.0e-102 377.5 510 44.1
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 5.8e-77 293.5 1004 28.5
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 8.3e-76 289.7 870 29.0
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 7.5e-69 266.5 354 43.5
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 2.3e-62 245.0 882 27.0
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 3.4e-53 214.5 362 40.3
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 1.6e-47 195.7 172 58.1
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 4.0e-38 164.5 169 48.5
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 5.3e-38 164.1 175 47.4
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 4.3e-24 117.9 82 72.0
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 1.3e-23 116.3 90 65.6
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 3.7e-23 114.8 90 64.4
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 2.4e-22 112.1 67 73.1
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 2.5e-19 102.1 90 62.2
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 5.5e-19 100.9 90 61.1
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 9.7e-16 90.1 68 67.6
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 4.1e-14 84.7 77 54.5
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 4.2e-11 74.7 173 34.7
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 2.3e-09 68.9 152 30.9
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 3.0e-09 68.6 35 88.6


User provided reference genes

Program Settings