Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 6.5e-157 557.4 285 100.0
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 8.2e-43 178.3 197 53.3
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 5.3e-42 175.6 183 55.2
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 6.9e-42 175.3 197 53.8
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.6e-41 173.3 176 56.2
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 4.5e-41 172.6 197 52.8
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 4.5e-41 172.6 203 52.2
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.0e-40 171.4 179 56.4
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 1.3e-40 171.0 199 52.8
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.2e-40 170.2 179 54.7
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.9e-40 169.9 179 54.2
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 8.5e-40 168.3 179 53.6
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 8.5e-40 168.3 176 56.8
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 8.5e-40 168.3 176 56.8
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 8.5e-40 168.3 176 56.8
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.1e-39 167.9 179 54.2
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 1.1e-39 167.9 183 53.0
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.9e-39 167.2 197 52.8
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 5.5e-39 165.6 179 53.6
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 7.2e-39 165.2 179 52.5
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 7.2e-39 165.2 179 52.5
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 1.2e-38 164.5 179 52.5
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 2.1e-38 163.7 180 53.9
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 1.4e-37 161.0 185 51.4
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.4e-37 161.0 198 52.0
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 1.8e-37 160.6 202 51.5
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 1.8e-37 160.6 202 51.5
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 3.0e-37 159.8 172 53.5
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 3.9e-37 159.5 185 51.4
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 5.1e-37 159.1 182 52.2
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 8.8e-37 158.3 185 51.4
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 8.8e-37 158.3 185 51.4
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 1.7e-35 154.1 171 50.9
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 1.8e-34 150.6 212 44.8
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 1.8e-34 150.6 191 46.1
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 2.4e-34 150.2 194 45.4
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 3.1e-34 149.8 189 47.1
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 4.1e-34 149.4 177 46.9
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 4.1e-34 149.4 194 43.8
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 5.3e-34 149.1 151 53.0
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 5.3e-34 149.1 157 51.6
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 6.9e-34 148.7 179 47.5
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 6.9e-34 148.7 195 44.6
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.2e-33 147.9 171 50.3
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 1.5e-33 147.5 173 48.6
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.0e-33 147.1 189 45.5
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.0e-33 147.1 194 44.3
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 2.0e-33 147.1 164 49.4
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 2.0e-33 147.1 196 44.9
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 2.6e-33 146.7 171 48.0
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 2.6e-33 146.7 209 41.6
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 2.6e-33 146.7 178 47.2
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 2.6e-33 146.7 165 50.3
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 3.4e-33 146.4 198 43.9
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 3.4e-33 146.4 198 43.9
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 3.4e-33 146.4 207 44.0
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 3.4e-33 146.4 178 47.8
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 4.5e-33 146.0 207 43.0
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 5.9e-33 145.6 195 44.1
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 5.9e-33 145.6 195 44.1
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 7.7e-33 145.2 183 45.9
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 7.7e-33 145.2 188 44.1
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 7.7e-33 145.2 164 48.2
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 7.7e-33 145.2 185 45.4
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.0e-32 144.8 211 42.2
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 1.3e-32 144.4 184 46.7
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 1.3e-32 144.4 171 46.8
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.3e-32 144.4 189 43.9
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.7e-32 144.1 153 50.3
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.7e-32 144.1 153 50.3
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.7e-32 144.1 213 42.3
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 1.7e-32 144.1 194 43.8
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 1.7e-32 144.1 192 42.2
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 2.2e-32 143.7 187 45.5
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.2e-32 143.7 159 47.2
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 2.9e-32 143.3 154 50.0
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 3.8e-32 142.9 150 51.3
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 3.8e-32 142.9 185 45.4
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 5.0e-32 142.5 159 46.5
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 5.0e-32 142.5 160 48.8
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 5.0e-32 142.5 203 42.9
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 5.0e-32 142.5 192 44.3
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 6.5e-32 142.1 163 48.5
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 6.5e-32 142.1 207 42.5
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 6.5e-32 142.1 195 42.6
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 6.5e-32 142.1 181 45.3
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 8.5e-32 141.7 172 47.7
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 1.1e-31 141.4 179 45.8
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.1e-31 141.4 189 44.4
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 1.4e-31 141.0 199 44.7
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 1.9e-31 140.6 169 46.2
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 2.5e-31 140.2 215 40.9
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 2.5e-31 140.2 183 44.8
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 3.2e-31 139.8 181 44.8
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 3.2e-31 139.8 188 44.1
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 5.5e-31 139.0 177 43.5
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 7.2e-31 138.7 127 55.1
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 7.2e-31 138.7 150 49.3
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 9.4e-31 138.3 185 43.8
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.2e-30 137.9 127 54.3
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.2e-30 137.9 215 40.0
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 1.2e-30 137.9 160 47.5
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.6e-30 137.5 168 46.4
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 1.6e-30 137.5 151 48.3
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 2.1e-30 137.1 176 44.9
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.7e-30 136.7 191 40.3
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 2.7e-30 136.7 189 41.8
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 4.7e-30 136.0 133 54.9
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 4.7e-30 136.0 201 41.8
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 4.7e-30 136.0 215 40.5
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 6.1e-30 135.6 158 47.5
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 7.9e-30 135.2 200 40.5
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.0e-29 134.8 182 45.1
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 1.4e-29 134.4 180 42.8
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.4e-29 134.4 188 42.6
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 3.0e-29 133.3 179 44.1
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 3.9e-29 132.9 153 46.4
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 3.9e-29 132.9 213 40.8
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 5.1e-29 132.5 186 44.1
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 5.1e-29 132.5 169 43.8
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.7e-29 132.1 200 42.0
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.1e-28 131.3 159 47.2
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 1.1e-28 131.3 159 45.9
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 2.0e-28 130.6 183 47.0
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.6e-28 130.2 200 40.5
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 2.6e-28 130.2 158 48.1
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 3.3e-28 129.8 193 40.9
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 5.7e-28 129.0 180 42.2
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 5.7e-28 129.0 158 46.2
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 5.7e-28 129.0 149 45.6
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 7.4e-28 128.6 209 38.8
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 9.7e-28 128.3 200 39.5
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 9.7e-28 128.3 200 39.5
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 9.7e-28 128.3 177 41.8
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 9.7e-28 128.3 154 42.9
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 3.7e-27 126.3 156 44.9
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 4.8e-27 125.9 144 47.2
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 2.4e-26 123.6 163 42.9
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 7.0e-26 122.1 227 37.0
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 2.6e-25 120.2 174 39.7
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 5.9e-25 119.0 181 40.9
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 1.0e-24 118.2 180 41.7
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 3.2e-23 113.2 102 54.9
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 5.9e-17 92.4 121 43.8
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.3e-16 91.3 170 38.8
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 3.2e-15 86.7 132 39.4
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 7.2e-15 85.5 159 38.4
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 2.1e-14 84.0 128 40.6
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 4.0e-13 79.7 78 52.6
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 2.0e-12 77.4 88 44.3
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 9.7e-12 75.1 91 42.9
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.3e-11 74.7 166 34.3
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.8e-10 70.9 57 64.9
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 7.0e-10 68.9 176 30.7
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 9.1e-10 68.6 57 64.9
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 2.0e-09 67.4 81 51.9
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 3.5e-09 66.6 75 53.3
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 7.7e-09 65.5 138 32.6
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 1.3e-08 64.7 95 45.3
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 1.5e-07 61.2 169 27.2
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 4.2e-07 59.7 116 34.5


User provided reference genes

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