Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 0.0e+00 1411.7 1353 100.0
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 6.1e-213 745.7 1358 54.5
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 3.5e-152 543.9 1395 54.3
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 6.0e-152 543.1 1395 47.5
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 6.0e-144 516.5 1392 47.8
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 1.2e-139 502.3 1544 40.6
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 9.3e-137 492.7 1395 51.6
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 1.8e-135 488.4 1395 56.6
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 2.1e-133 481.5 1397 50.7
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 6.9e-132 476.5 1391 47.4
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 2.2e-130 471.5 1392 44.1
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 1.5e-126 458.8 1352 49.9
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 9.6e-126 456.1 1397 47.2
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 5.9e-123 446.8 1395 45.7
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 2.2e-117 428.3 1396 44.8
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 1.1e-116 426.0 1396 44.7
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 4.5e-115 420.6 1387 47.4
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 1.0e-114 419.5 1356 57.8
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 5.0e-114 417.2 1368 47.9
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 1.2e-112 412.5 1387 45.9
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 4.6e-112 410.6 1396 46.1
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 1.0e-111 409.5 1481 42.7
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 1.4e-111 409.1 1355 56.5
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 3.7e-109 401.0 1392 51.7
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 6.3e-109 400.2 1450 44.0
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 2.4e-108 398.3 1301 45.5
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.4e-108 398.3 1396 51.7
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 9.1e-108 396.4 1392 45.8
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 4.5e-107 394.0 1387 48.7
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 7.7e-107 393.3 1392 50.9
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 4.2e-105 387.5 1108 38.3
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 3.9e-103 380.9 633 47.6
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 5.1e-103 380.6 1387 46.1
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 1.5e-102 379.0 1355 58.5
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 6.3e-101 373.6 1398 44.6
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 3.2e-97 361.3 1582 40.8
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 8.0e-96 356.7 1396 49.9
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 2.6e-94 351.7 627 44.7
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 1.3e-93 349.4 1396 44.4
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 3.7e-93 347.8 1482 50.5
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 2.4e-92 345.1 1396 44.1
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 5.3e-92 344.0 573 47.5
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 5.3e-92 344.0 1402 56.5
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 5.3e-92 344.0 1591 38.5
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 7.0e-92 343.6 1481 50.4
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 9.1e-92 343.2 1392 42.0
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 4.5e-91 340.9 1353 54.8
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 3.8e-90 337.8 1390 45.1
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 5.0e-90 337.4 1389 46.5
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 1.1e-89 336.3 1584 38.4
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 2.5e-89 335.1 1355 37.5
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.2e-88 332.8 1422 39.2
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.2e-88 332.8 1401 43.3
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.7e-88 331.6 1400 44.1
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 5.2e-87 327.4 1472 50.2
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 5.2e-87 327.4 1429 43.7
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 2.0e-86 325.5 1396 43.5
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 2.0e-86 325.5 1398 43.6
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 9.8e-86 323.2 1396 40.9
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 4.8e-85 320.9 1591 37.6
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 1.4e-84 319.3 659 39.5
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 2.2e-82 312.0 1389 47.0
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 6.5e-82 310.5 1393 47.1
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 1.2e-80 306.2 1399 42.4
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.6e-80 305.8 1399 47.7
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 6.8e-79 300.4 1398 43.2
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 1.3e-77 296.2 1605 33.3
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 2.8e-77 295.0 1391 41.2
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 2.3e-74 285.4 1586 38.1
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 2.9e-74 285.0 1355 51.5
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 3.8e-74 284.6 625 38.9
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 6.6e-74 283.9 1398 48.4
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.1e-73 283.1 622 37.3
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.2e-72 279.6 1400 43.1
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.2e-72 279.6 1400 43.1
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.2e-72 279.6 622 36.3
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 8.0e-72 276.9 1394 49.4
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 1.4e-71 276.2 1398 40.2
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 6.8e-71 273.9 1392 35.5
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 1.2e-70 273.1 1354 41.6
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 2.0e-70 272.3 766 33.4
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 3.7e-69 268.1 1356 41.6
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.1e-68 266.5 1393 40.0
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 7.0e-68 263.8 1427 37.6
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.2e-67 263.1 1355 55.1
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 2.7e-67 261.9 1354 37.5
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 5.9e-67 260.8 1072 37.7
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 2.3e-66 258.8 1605 37.0
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 6.6e-66 257.3 1037 51.5
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 1.9e-65 255.8 1586 38.1
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 5.6e-65 254.2 582 38.1
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 1.6e-64 252.7 1358 45.7
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 2.8e-64 251.9 1546 39.1
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 1.4e-63 249.6 1483 46.0
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 4.0e-63 248.1 1393 35.9
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 1.9e-60 239.2 1391 42.8
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 2.4e-60 238.8 363 55.1
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 1.2e-59 236.5 1482 48.2
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 1.0e-58 233.4 1362 36.6
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 1.1e-57 229.9 1585 38.0
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 3.6e-56 224.9 771 39.6
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 8.9e-55 220.3 1391 46.2
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 4.4e-54 218.0 358 54.2
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 4.4e-54 218.0 358 54.2
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 8.6e-50 203.8 366 51.4
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 4.3e-49 201.4 629 29.1
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 3.6e-48 198.4 578 34.1
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 2.3e-47 195.7 573 43.3
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 3.1e-47 195.3 1355 51.6
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 3.5e-43 181.8 582 34.0
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 6.9e-39 167.5 426 36.4
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.9e-37 162.2 300 40.7
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 8.4e-37 160.6 240 47.9
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 1.4e-36 159.8 1361 36.1
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 2.4e-36 159.1 1393 34.0
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 2.4e-36 159.1 541 30.9
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 1.5e-33 149.8 260 41.9
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 1.9e-33 149.4 366 45.4
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 1.9e-33 149.4 246 44.7
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 4.8e-32 144.8 578 31.0
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 7.6e-30 137.5 215 43.3
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 2.2e-29 136.0 193 46.6
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 3.8e-29 135.2 485 29.5
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 4.9e-29 134.8 426 32.9
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 2.4e-28 132.5 223 42.6
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 7.1e-28 131.0 224 44.6
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 1.2e-27 130.2 251 48.2
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 3.9e-26 125.2 554 30.7
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 6.7e-26 124.4 1357 37.4
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.1e-25 123.6 195 48.7
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 6.2e-24 117.9 212 39.6
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 1.8e-23 116.3 339 40.1
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 2.9e-21 109.0 1356 35.8
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 3.8e-21 108.6 233 38.2
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 2.4e-20 105.9 254 34.6
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 9.3e-20 104.0 171 42.7
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 1.2e-19 103.6 188 39.9
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 6.0e-19 101.3 579 28.7
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 5.1e-18 98.2 592 30.1
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 1.9e-17 96.3 592 30.6
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 2.5e-17 95.9 221 33.9
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 4.3e-17 95.1 1421 22.2
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 1.8e-15 89.7 324 38.3
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 2.4e-15 89.4 586 33.3
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 6.9e-15 87.8 89 52.8
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.2e-14 87.0 89 52.8
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 1.2e-11 77.0 267 31.1
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 1.6e-11 76.6 158 46.8
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 1.6e-11 76.6 602 26.2
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 5.1e-10 71.6 534 25.3
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 8.7e-10 70.9 260 33.1
BcaC09g49104 Brassica carinata HOM05D003806 ORTHO05D004346 3.3e-09 68.9 74 60.8
HPP92_027643 Vanilla planifolia HOM05D003806 ORTHO05D004346 3.3e-09 68.9 191 31.4
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 5.7e-09 68.2 343 27.7
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.1e-08 66.2 161 52.2
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 8.2e-08 64.3 74 48.6
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 8.2e-08 64.3 74 48.6
BcaC07g42136 Brassica carinata HOM05D003806 ORTHO05D004346 1.8e-07 63.2 389 31.9
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.8e-07 63.2 268 25.4
Dinv29619 Davidia involucrata HOM05D003806 ORTHO05D004346 9.0e-07 60.8 52 63.5
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.2e-06 60.5 259 27.0
Nn7g36612 Nelumbo nucifera HOM05D002721 ORTHO05D002919 1.2e-06 60.5 301 26.2
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.6e-06 59.3 259 26.6
Nn2g14903 Nelumbo nucifera HOM05D002721 ORTHO05D002919 2.6e-06 59.3 301 26.9
COL.COLO4_25875 Corchorus olitorius HOM05D002721 ORTHO05D002919 3.4e-06 58.9 301 27.2
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 5.9e-06 58.2 586 30.0
Dinv33882 Davidia involucrata HOM05D002721 ORTHO05D002919 1.0e-05 57.4 302 28.1


User provided reference genes

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