Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1991.1 1025 100.0
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1764.6 1035 89.1
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1628.2 1024 82.1
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1585.5 1026 80.4
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1583.9 1034 80.2
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1558.9 1027 79.6
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1552.0 1028 79.8
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1551.2 1031 79.4
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1546.6 1027 79.6
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1538.5 1023 79.0
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1537.3 1027 79.2
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1536.5 1036 78.4
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1535.4 1026 79.2
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1531.2 1036 78.2
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1531.2 1036 78.1
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1486.9 1020 75.1
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1475.7 1023 76.2
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1472.2 1022 76.1
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1471.8 1030 73.6
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1466.4 1026 75.7
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1466.1 1001 75.6
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1465.7 1017 74.5
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1465.7 1032 75.4
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1464.9 1021 73.9
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1460.3 1031 73.2
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1460.3 1021 74.3
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1458.0 1038 74.5
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1458.0 1031 73.0
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1456.4 1007 74.6
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1454.9 1005 74.0
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1451.0 1014 73.8
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1449.9 1017 74.1
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1438.7 1012 73.5
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1436.8 1022 72.5
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1436.8 1019 73.0
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1431.8 1012 73.2
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1430.2 1015 72.7
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1430.2 1007 73.0
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1427.9 1009 73.6
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1421.8 1002 72.1
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1420.6 1010 73.0
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1420.6 1006 73.2
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1417.9 1032 72.4
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1417.1 1025 72.7
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1414.4 1009 72.7
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1412.5 1014 73.2
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1411.7 1007 73.3
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1411.0 1006 72.8
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1410.6 1013 72.3
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1409.8 1014 73.1
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1409.4 1008 72.6
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1408.7 1006 72.4
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1405.2 998 73.2
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1403.7 1024 72.8
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1402.9 1029 71.4
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1399.0 1033 70.9
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1398.6 1026 71.7
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1397.5 1025 71.9
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1395.9 969 73.6
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1393.3 1023 71.7
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1392.9 1025 71.3
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1390.6 1023 72.5
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1388.6 1012 71.3
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1388.6 1016 71.6
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1388.2 1032 71.0
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1388.2 1028 71.0
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1388.2 1019 71.3
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1387.1 1026 70.6
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1384.0 1007 71.2
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1382.9 1050 69.3
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1382.1 1005 71.0
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1381.3 1009 71.1
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1380.2 1027 70.5
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1375.1 1055 69.2
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1369.8 1013 71.2
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1367.4 1013 70.1
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1367.4 1013 70.1
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1367.1 1009 70.9
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1364.0 1062 68.7
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1363.6 1021 70.6
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1361.7 1018 70.8
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1359.0 1009 70.3
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1355.9 1020 69.9
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1355.1 1003 70.7
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1353.6 1041 68.5
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1348.2 1007 70.3
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1345.1 1047 69.1
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1343.6 1020 67.7
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1342.4 1007 70.0
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1339.3 1007 70.1
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1338.6 912 74.8
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1334.3 1021 69.3
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1331.2 1043 68.2
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1327.4 1016 68.3
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1324.7 1018 67.0
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1319.7 1005 68.7
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1315.1 1012 68.2
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1315.1 1023 66.4
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1314.3 1013 67.5
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1311.2 1029 67.4
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1310.4 1030 67.7
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1310.4 1006 68.5
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1300.4 1004 68.7
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1300.0 1025 65.5
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1296.2 1006 69.0
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1295.8 1021 67.0
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1294.3 916 74.3
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1286.6 891 75.3
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1283.9 918 73.7
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1276.5 1031 66.1
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1273.1 891 74.3
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1272.3 998 66.7
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1257.7 988 67.3
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1251.9 1009 66.2
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1249.6 1005 66.7
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1239.6 1019 64.8
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1234.2 1030 64.2
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1231.9 1033 64.9
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1183.3 1030 62.5
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1176.0 930 67.1
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1163.3 1031 61.3
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1159.1 1003 61.0
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1140.6 1021 62.0
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1137.9 1026 61.4
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1133.6 1007 61.5
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1132.1 1048 59.4
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1117.1 1018 59.7
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1110.9 1073 57.9
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 3.9e-305 1051.6 991 59.6
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 3.3e-296 1021.9 899 60.6
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 5.0e-284 981.5 1038 56.1
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 5.0e-276 954.9 799 65.0
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 3.2e-275 952.2 814 62.5
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 4.3e-259 898.7 1003 52.2
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 1.1e-254 884.0 719 67.3
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 1.1e-254 884.0 744 66.7
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.2e-254 882.5 975 50.1
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.0e-252 875.9 971 51.0
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 2.3e-249 866.3 1045 49.5
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 1.2e-232 810.8 972 47.1
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 5.6e-227 792.0 827 52.7
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 7.9e-221 771.5 809 53.3
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 2.2e-207 726.9 911 46.4
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 8.2e-202 708.4 719 59.5
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 2.2e-194 683.7 639 59.6
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 7.4e-179 632.1 818 49.0
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 9.4e-174 615.1 984 40.5
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 1.5e-171 607.8 635 55.0
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 1.5e-158 564.7 436 69.7
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 1.6e-152 544.7 670 51.2
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 5.6e-150 536.2 628 51.0
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.6e-141 506.9 588 50.9
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 8.9e-140 502.3 1163 33.2
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 3.9e-111 407.1 644 43.3
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 2.5e-110 404.4 542 45.0
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.0e-103 382.5 279 72.8
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 7.9e-88 329.7 239 74.1
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 1.1e-84 319.3 270 64.1
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 8.5e-82 309.7 311 57.6
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 7.2e-73 280.0 672 34.4
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 6.3e-69 266.9 304 51.3
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 2.4e-60 238.4 1104 25.5
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 6.1e-56 223.8 183 66.7
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 9.7e-54 216.5 164 71.3
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.4e-52 212.6 215 51.6
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 5.0e-50 204.1 981 24.9
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.4e-44 185.3 219 44.7
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.1e-44 184.5 153 58.8
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 9.5e-33 146.7 243 41.6
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 7.5e-30 137.1 126 52.4
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 3.2e-28 131.7 128 53.9
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 9.8e-22 110.2 95 54.7
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 9.8e-22 110.2 95 54.7
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 2.2e-21 109.0 112 50.9
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 2.0e-14 85.9 63 71.4
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 4.1e-12 78.2 54 72.2
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 4.1e-12 78.2 66 56.1


User provided reference genes

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