Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 2.2e-271 938.3 464 100.0
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 2.6e-224 781.9 465 82.4
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 2.6e-224 781.9 465 82.4
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 5.9e-224 780.8 465 81.5
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 2.9e-223 778.5 464 80.4
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 3.8e-223 778.1 455 82.4
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 3.6e-221 771.5 460 80.2
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 1.4e-220 769.6 464 81.0
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 1.8e-220 769.2 462 80.5
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 5.1e-220 767.7 452 81.4
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 6.7e-220 767.3 462 79.0
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.0e-219 765.8 461 79.6
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 2.5e-219 765.4 497 76.7
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 1.7e-218 762.7 464 80.2
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 2.2e-218 762.3 469 79.7
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 2.2e-218 762.3 455 80.2
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 2.8e-218 761.9 442 82.8
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 4.1e-217 758.1 463 79.7
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 9.1e-217 756.9 424 84.0
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 2.0e-216 755.7 462 79.4
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 4.5e-216 754.6 462 78.4
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 7.7e-216 753.8 453 78.8
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.2e-215 752.3 455 78.9
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 2.9e-215 751.9 464 78.2
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 3.8e-215 751.5 480 76.0
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 1.1e-214 750.0 465 78.7
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 3.2e-214 748.4 457 78.6
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 6.1e-213 744.2 464 76.1
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 1.0e-212 743.4 460 77.4
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 1.8e-212 742.7 458 78.6
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 3.9e-212 741.5 453 78.8
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 5.1e-212 741.1 458 79.5
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 1.5e-211 739.6 464 77.6
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.0e-211 739.2 457 77.7
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 2.6e-211 738.8 464 77.8
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 2.6e-211 738.8 453 77.7
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 1.3e-210 736.5 454 77.8
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 1.7e-210 736.1 461 78.1
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 1.1e-209 733.4 451 77.8
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.4e-209 733.0 486 74.1
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 2.4e-209 732.3 462 76.8
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 4.1e-209 731.5 497 73.0
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 4.1e-209 731.5 456 74.8
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 5.3e-209 731.1 453 77.5
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 9.1e-209 730.3 458 75.5
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 1.2e-208 729.9 456 75.7
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 3.5e-208 728.4 459 76.5
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 4.5e-208 728.0 462 75.3
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 1.3e-207 726.5 454 75.6
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 2.2e-207 725.7 459 75.2
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 1.1e-206 723.4 454 75.6
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 2.5e-206 722.2 456 74.6
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 1.2e-205 719.9 468 74.1
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 1.6e-205 719.5 460 75.7
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.6e-205 719.5 456 74.8
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 1.6e-205 719.5 468 74.1
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 2.1e-205 719.2 454 77.8
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 1.0e-204 716.8 484 71.9
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 1.0e-204 716.8 466 74.5
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.0e-204 716.8 495 71.5
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 1.0e-204 716.8 456 74.6
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 4.0e-204 714.9 456 74.6
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 5.2e-204 714.5 474 72.4
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 2.0e-203 712.6 468 73.5
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 4.4e-203 711.4 475 73.1
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 7.4e-203 710.7 463 73.9
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 7.4e-203 710.7 451 75.4
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 1.3e-202 709.9 457 74.8
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 2.8e-202 708.8 455 74.5
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 3.7e-202 708.4 457 75.3
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 6.3e-202 707.6 464 73.7
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 6.3e-202 707.6 458 73.4
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 1.1e-201 706.8 450 75.6
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 3.1e-201 705.3 462 73.8
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 5.3e-201 704.5 604 60.8
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 5.3e-201 704.5 453 74.0
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 9.1e-201 703.7 475 73.1
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 1.2e-200 703.4 468 73.3
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 2.0e-200 702.6 462 73.2
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 3.5e-200 701.8 462 73.4
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 1.3e-199 699.9 434 76.0
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 2.9e-199 698.7 456 74.6
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 2.9e-199 698.7 462 73.2
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 6.5e-199 697.6 449 74.8
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 1.1e-198 696.8 501 69.1
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 2.5e-198 695.7 464 72.8
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 7.2e-198 694.1 464 72.6
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 9.4e-198 693.7 423 78.7
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 1.8e-196 689.5 465 72.5
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 2.6e-195 685.6 536 64.7
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 7.5e-195 684.1 457 72.0
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 1.3e-194 683.3 449 74.2
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 4.1e-193 678.3 462 71.9
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 6.5e-191 671.0 458 70.1
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 2.0e-187 659.4 436 72.5
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 5.7e-187 657.9 423 72.8
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 5.4e-177 624.8 382 78.5
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 8.6e-175 617.5 362 82.3
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 5.6e-174 614.8 457 64.3
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 8.0e-173 610.9 377 76.9
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 1.5e-166 590.1 398 73.6
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 1.5e-166 590.1 364 76.9
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 7.3e-166 587.8 378 73.5
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 1.4e-156 557.0 449 62.4
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 3.1e-156 555.8 449 61.5
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 4.1e-153 545.4 455 59.8
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 2.5e-150 536.2 470 59.1
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 5.2e-148 528.5 450 58.0
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 2.5e-142 509.6 431 60.6
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 1.8e-140 503.4 281 83.3
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 2.7e-136 489.6 363 67.5
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 1.5e-134 483.8 455 54.3
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 4.0e-132 475.7 461 56.0
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 2.0e-123 446.8 285 73.3
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 4.2e-121 439.1 290 71.7
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 2.1e-117 426.8 253 77.1
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 1.9e-105 387.1 253 73.5
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 7.9e-104 381.7 497 44.5
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 4.1e-100 369.4 253 73.1
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 6.1e-96 355.5 441 45.1
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 7.4e-94 348.6 538 41.4
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 5.2e-87 325.9 452 39.6
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 6.7e-87 325.5 247 67.6
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 6.7e-87 325.5 253 66.8
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 2.7e-75 287.0 242 62.4
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 1.1e-68 265.0 162 75.9
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 9.2e-68 261.9 163 77.3
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 9.2e-68 261.9 184 71.2
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 2.7e-67 260.4 202 66.8
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 3.8e-66 256.5 152 87.5
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.4e-63 248.1 219 62.1
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 4.6e-59 233.0 242 54.5
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.6e-43 181.4 118 73.7
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 6.0e-43 179.5 120 75.8
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 3.9e-42 176.8 103 86.4
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 1.5e-41 174.9 116 66.4
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 1.5e-41 174.9 115 74.8
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.3e-39 167.5 341 34.3
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 6.8e-39 166.0 107 78.5
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 2.2e-37 161.0 116 69.8
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 1.6e-32 144.8 91 78.0
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.6e-32 144.8 93 68.8
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 1.4e-31 141.7 87 70.1
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 1.5e-22 111.7 103 58.3
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 8.4e-21 105.9 71 77.5
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 8.4e-21 105.9 71 77.5
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 8.4e-21 105.9 71 77.5
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 2.7e-19 100.9 97 52.6
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 3.0e-18 97.4 66 69.7
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 9.6e-17 92.4 68 66.2
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 2.0e-14 84.7 71 66.2
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 9.9e-14 82.4 305 27.2
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 2.4e-12 77.8 56 64.3
Sed0021837 Sechium edule HOM05D004762 ORTHO05D005972 7.9e-11 72.8 43 81.4
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 1.3e-10 72.0 42 81.0
MD02G1220900 Malus domestica HOM05D004762 ORTHO05D005972 7.4e-09 66.2 41 73.2
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 9.6e-09 65.9 39 79.5
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 9.6e-09 65.9 39 79.5
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 1.3e-08 65.5 67 53.7
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 2.8e-08 64.3 39 76.9
GSVIVG01022727001 Vitis vinifera HOM05D004762 ORTHO05D005972 4.8e-08 63.5 51 60.8
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 1.2e-06 58.9 51 62.7
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 2.6e-06 57.8 229 27.5
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 3.4e-06 57.4 199 28.1
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 5.8e-06 56.6 283 27.2


User provided reference genes

Program Settings