Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3564 Trochodendron aralioides HOM05D002356 ORTHO05D002546 1.5e-53 212.6 109 100.0
TAR629G2074 Trochodendron aralioides HOM05D002356 ORTHO05D002546 4.1e-27 124.8 79 84.8
Nn1g00254 Nelumbo nucifera HOM05D002356 ORTHO05D002546 1.0e-22 110.2 79 75.9
PSO063G4681 Papaver somniferum HOM05D002356 ORTHO05D002546 5.7e-21 104.4 81 71.6
Dinv37516 Davidia involucrata HOM05D002356 ORTHO05D002546 2.8e-20 102.1 76 73.7
MBI06_g44796_MAGBIO Magnolia biondii HOM05D002356 ORTHO05D002546 2.4e-19 99.0 79 67.1
Duzib068G0700 Durio zibethinus HOM05D002356 ORTHO05D002546 4.1e-19 98.2 76 71.1
Thecc.03G300500 Theobroma cacao HOM05D002356 ORTHO05D002546 2.0e-18 95.9 76 68.4
Manes.02G008500 Manihot esculenta HOM05D002356 ORTHO05D002546 7.8e-18 94.0 76 64.5
GSVIVG01019558001 Vitis vinifera HOM05D002356 ORTHO05D002546 7.8e-18 94.0 76 68.4
vmacro11344 Vaccinium macrocarpon HOM05D002356 ORTHO05D002546 1.0e-17 93.6 76 67.1
Gorai.003G078500 Gossypium raimondii HOM05D002356 ORTHO05D002546 2.9e-17 92.0 77 67.5
Haze_09088 Corylus avellana HOM05D002356 ORTHO05D002546 3.8e-17 91.7 79 63.3
Gohir.D03G084100 Gossypium hirsutum HOM05D002356 ORTHO05D002546 3.8e-17 91.7 77 66.2
Cfa011984 Carpinus fangiana HOM05D002356 ORTHO05D002546 5.0e-17 91.3 79 64.6
TWI15G0564 Tripterygium wilfordii HOM05D002356 ORTHO05D002546 6.6e-17 90.9 76 65.8
CSS0018780 Camellia sinensis var. sinensis HOM05D002356 ORTHO05D002546 1.9e-16 89.4 76 64.5
Actinidia22173 Actinidia chinensis HOM05D002356 ORTHO05D002546 2.5e-16 89.0 75 64.0
Gohir.A02G099600 Gossypium hirsutum HOM05D002356 ORTHO05D002546 2.5e-16 89.0 77 64.9
Ciclev10024632m.g Citrus clementina HOM05D002356 ORTHO05D002546 3.3e-16 88.6 76 64.5
Atru.chr9.1925 Acer truncatum HOM05D002356 ORTHO05D002546 7.3e-16 87.4 76 64.5
CSS0017927 Camellia sinensis var. sinensis HOM05D002356 ORTHO05D002546 7.3e-16 87.4 76 63.2
RcHm_v2.0_Chr7g0194211 Rosa chinensis HOM05D002356 ORTHO05D002546 1.2e-15 86.7 79 59.5
QL02p030067 Quercus lobata HOM05D002356 ORTHO05D002546 2.1e-15 85.9 78 57.7
FAN08G0678 Fragaria x ananassa HOM05D002356 ORTHO05D007406 3.6e-15 85.1 79 57.0
FvH4_5g04871 Fragaria vesca HOM05D002356 ORTHO05D002546 4.7e-15 84.7 79 58.2
FAN18G2206 Fragaria x ananassa HOM05D002356 ORTHO05D007406 4.7e-15 84.7 79 58.2
CsaV3_5G001880 Cucumis sativus L. HOM05D002356 ORTHO05D002546 1.0e-14 83.6 78 56.4
FAN13G1079 Fragaria x ananassa HOM05D002356 ORTHO05D007406 1.0e-14 83.6 79 57.0
Migut.A00622 Erythranthe guttata HOM05D002356 ORTHO05D002546 2.3e-14 82.4 79 54.4
Ah.12g052680 Amaranthus hybridus HOM05D002356 ORTHO05D002546 3.0e-14 82.0 73 58.9
Prupe.5G122600 Prunus persica HOM05D002356 ORTHO05D002546 5.2e-14 81.3 77 62.3
Nitab4.5_0005962g0030 Nicotiana tabacum HOM05D002356 ORTHO05D002546 6.8e-14 80.9 79 55.7
MD06G1109600 Malus domestica HOM05D002356 ORTHO05D002546 8.9e-14 80.5 89 55.1
Sed0005802 Sechium edule HOM05D002356 ORTHO05D002546 2.0e-13 79.3 78 55.1
CANSAT21G0917 Cannabis sativa HOM05D002356 ORTHO05D002546 2.6e-13 79.0 81 55.6
FAN04G1057 Fragaria x ananassa HOM05D002356 ORTHO05D007406 2.6e-13 79.0 79 57.0
Eucgr.E00881 Eucalyptus grandis HOM05D002356 ORTHO05D002546 3.4e-13 78.6 79 55.7
Nitab4.5_0000798g0060 Nicotiana tabacum HOM05D002356 ORTHO05D002546 3.4e-13 78.6 79 54.4
Lalb_Chr16g0376881 Lupinus albus HOM05D002356 ORTHO05D002546 4.4e-13 78.2 76 50.0
Sed0017112 Sechium edule HOM05D002356 ORTHO05D002546 4.4e-13 78.2 78 53.8
ClCG01G001740 Citrullus lanatus HOM05D002356 ORTHO05D002546 5.8e-13 77.8 78 52.6
Lj2A164G51 Lonicera japonica HOM05D002356 ORTHO05D002546 7.5e-13 77.4 79 57.0
Glyma.11G016300 Glycine max HOM05D002356 ORTHO05D002546 9.8e-13 77.0 79 51.9
EL10Ac5g12936 Beta vulgaris HOM05D002356 ORTHO05D002546 1.3e-12 76.6 73 54.8
Peaxi162Scf00074g00626 Petunia axillaris HOM05D002356 ORTHO05D002546 2.2e-12 75.9 79 53.2
LjContig00222g0002051 Lotus japonicus HOM05D002356 ORTHO05D002546 2.9e-12 75.5 79 53.2
Cc08_g16250 Coffea canephora HOM05D002356 ORTHO05D002546 4.9e-12 74.7 80 51.2
SGA_v2.0_scaffold726G53520 Striga asiatica HOM05D002356 ORTHO05D002546 4.9e-12 74.7 79 45.6
Cpa.g.sc79.9 Carica papaya HOM05D002356 ORTHO05D002546 1.1e-11 73.6 76 51.3
Glyma.01G226400 Glycine max HOM05D002356 ORTHO05D002546 1.4e-11 73.2 79 49.4
Phvul.002G165300 Phaseolus vulgaris HOM05D002356 ORTHO05D002546 1.4e-11 73.2 75 49.3
Potri.001G089700 Populus trichocarpa HOM05D002356 ORTHO05D002546 1.4e-11 73.2 77 53.2
MSTRG.11914 Avicennia marina HOM05D002356 ORTHO05D002546 1.9e-11 72.8 79 48.1
Hund11379 Selenicereus undatus HOM05D002356 ORTHO05D002546 1.9e-11 72.8 72 58.3
Carub.0007s1713 Capsella rubella HOM05D002356 ORTHO05D002546 2.4e-11 72.4 78 53.8
PGR042G1872 Punica granatum HOM05D002356 ORTHO05D002546 2.4e-11 72.4 79 57.0
Sopen08g030800 Solanum pennellii HOM05D002356 ORTHO05D002546 2.0e-10 69.3 79 50.6
AL7G29360 Arabidopsis lyrata HOM05D002356 ORTHO05D002546 6.0e-10 67.8 78 50.0
THA.LOC104806441 Tarenaya hassleriana HOM05D002356 ORTHO05D002546 6.0e-10 67.8 77 50.6
Thhalv10027053m.g Eutrema salsugineum HOM05D002356 ORTHO05D002546 1.0e-09 67.0 78 48.7
Potri.003G141500 Populus trichocarpa HOM05D002356 ORTHO05D002546 1.0e-09 67.0 77 53.2
Solyc08g082540.3 Solanum lycopersicum HOM05D002356 ORTHO05D002546 1.0e-09 67.0 79 49.4
SalBow1G7163 Salvia bowleyana HOM05D002356 ORTHO05D002546 1.7e-09 66.2 79 48.1
arahy.Tifrunner.gnm1.ann1.6P6FL8 Arachis hypogaea HOM05D002356 ORTHO05D002546 2.3e-09 65.9 81 45.7
CARHR231370 Cardamine hirsuta HOM05D002356 ORTHO05D002546 2.3e-09 65.9 78 48.7
AT4G23950 Arabidopsis thaliana HOM05D002356 ORTHO05D002546 3.9e-09 65.1 78 48.7
arahy.Tifrunner.gnm1.ann1.Q3JEBE Arachis hypogaea HOM05D002356 ORTHO05D002546 3.9e-09 65.1 81 45.7
TPR.G37955 Trifolium pratense HOM05D002356 ORTHO05D002546 6.6e-09 64.3 79 44.3
BcaNung01102 Brassica carinata HOM05D002356 ORTHO05D002546 1.9e-08 62.8 78 47.4
A01p15250 Brassica napus HOM05D002356 ORTHO05D007406 1.9e-08 62.8 78 47.4
Sabra01G0066100 Salix brachista HOM05D002356 ORTHO05D002546 1.9e-08 62.8 77 46.8
Sp7g21920 Schrenkiella parvula HOM05D002356 ORTHO05D002546 1.9e-08 62.8 78 44.9
BcaC09g50927 Brassica carinata HOM05D002356 ORTHO05D002546 2.5e-08 62.4 78 47.4
C01p19180 Brassica napus HOM05D002356 ORTHO05D007406 2.5e-08 62.4 78 47.4
BolC1t01844H Brassica oleracea HOM05D002356 ORTHO05D007406 2.5e-08 62.4 78 47.4
BraA01t01465Z Brassica rapa HOM05D002356 ORTHO05D007406 2.5e-08 62.4 78 47.4
Zm00001eb357660 Zea mays HOM05D002356 ORTHO05D002546 3.3e-08 62.0 84 44.0
Psat2g186000 Pisum sativum HOM05D002356 ORTHO05D002546 7.3e-08 60.8 79 44.3
ATR0602G241 Amborella trichopoda HOM05D002356 ORTHO05D002546 1.6e-07 59.7 76 46.1
Aa31LG6G7190 Aethionema arabicum HOM05D002356 ORTHO05D002546 3.6e-07 58.5 78 44.9
MBI06_g32156_MAGBIO Magnolia biondii HOM05D002356 ORTHO05D002546 1.1e-06 57.0 76 40.8
PGSC0003DMG400012268 Solanum tuberosum HOM05D002356 ORTHO05D002546 1.4e-06 56.6 63 49.2


User provided reference genes

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