Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3485 Trochodendron aralioides HOM05D004854 ORTHO05D005854 3.3e-25 118.6 60 100.0
CSS0022850 Camellia sinensis var. sinensis HOM05D004854 ORTHO05D005854 5.3e-23 111.3 60 93.3
TAR625G0051 Trochodendron aralioides HOM05D004854 ORTHO05D005854 2.6e-22 109.0 60 91.7
Actinidia39348 Actinidia chinensis HOM05D000406 ORTHO05D003425 1.0e-21 107.1 60 88.3
TWI18G0069 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 1.0e-21 107.1 60 86.7
PGSC0003DMG400008513 Solanum tuberosum HOM05D004854 ORTHO05D005854 3.8e-21 105.1 60 85.0
vmacro20836 Vaccinium macrocarpon HOM05D004854 ORTHO05D005854 3.8e-21 105.1 60 85.0
CiPaw.08G034100 Carya illinoinensis HOM05D004854 ORTHO05D005854 5.0e-21 104.8 60 83.3
Nitab4.5_0000074g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 5.0e-21 104.8 60 85.0
Nitab4.5_0012849g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 5.0e-21 104.8 60 85.0
Rhsim01G0120500 Rhododendron simsii HOM05D004854 ORTHO05D005854 6.5e-21 104.4 60 85.0
Atru.chr12.1305 Acer truncatum HOM05D004854 ORTHO05D005854 8.5e-21 104.0 60 85.0
Peaxi162Scf00324g00719 Petunia axillaris HOM05D004854 ORTHO05D005854 1.1e-20 103.6 60 83.3
Solyc07g009330.4 Solanum lycopersicum HOM05D004854 ORTHO05D005854 1.1e-20 103.6 60 83.3
TWI38G1790 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 1.1e-20 103.6 60 83.3
Dinv26446 Davidia involucrata HOM05D004854 ORTHO05D005854 1.4e-20 103.2 60 83.3
TWI38G2070 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 1.9e-20 102.8 60 83.3
PGR044G2628 Punica granatum HOM05D004854 ORTHO05D005854 2.5e-20 102.4 60 81.7
PGR109G0004 Punica granatum HOM05D004854 ORTHO05D005854 2.5e-20 102.4 60 81.7
SGA_v2.0_scaffold21G09635 Striga asiatica HOM05D004854 ORTHO05D005854 2.5e-20 102.4 60 83.3
Eucgr.C02261 Eucalyptus grandis HOM05D004854 ORTHO05D005854 3.2e-20 102.1 60 80.0
Eucgr.C02263 Eucalyptus grandis HOM05D004854 ORTHO05D005854 3.2e-20 102.1 60 80.0
QL11p004841 Quercus lobata HOM05D004854 ORTHO05D005854 3.2e-20 102.1 60 81.7
Sopen07g005080 Solanum pennellii HOM05D004854 ORTHO05D005854 3.2e-20 102.1 60 81.7
CDE05G0266 Ceratophyllum demersum HOM05D000177 ORTHO05D008165 4.2e-20 101.7 60 83.3
CDE05G2165 Ceratophyllum demersum HOM05D004854 ORTHO05D005854 4.2e-20 101.7 60 83.3
MBI13_g31550_MAGBIO Magnolia biondii HOM05D004854 ORTHO05D005854 5.5e-20 101.3 60 81.7
GSVIVG01010910001 Vitis vinifera HOM05D004854 ORTHO05D005854 5.5e-20 101.3 60 81.7
Dinv25401 Davidia involucrata HOM05D004854 ORTHO05D005854 7.2e-20 100.9 60 81.7
Actinidia29956 Actinidia chinensis HOM05D004854 ORTHO05D005854 9.3e-20 100.5 60 81.7
Dinv25400 Davidia involucrata HOM05D004854 ORTHO05D005854 1.2e-19 100.1 60 81.7
Sp6g19020 Schrenkiella parvula HOM05D004854 ORTHO05D005854 1.2e-19 100.1 60 81.7
Eucgr.A01410 Eucalyptus grandis HOM05D004854 ORTHO05D005854 1.6e-19 99.8 60 78.3
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 1.6e-19 99.8 60 80.0
Sc26g0002890 Simmondsia chinensis HOM05D004854 ORTHO05D005854 1.6e-19 99.8 60 80.0
THA.LOC104813509 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 1.6e-19 99.8 60 81.7
CAN.G86.2 Capsicum annuum HOM05D004854 ORTHO05D005854 2.1e-19 99.4 60 80.0
AL8G33260 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 2.7e-19 99.0 60 80.0
BcaB05g22334 Brassica carinata HOM05D004854 ORTHO05D005854 2.7e-19 99.0 60 80.0
BcaC03g14166 Brassica carinata HOM05D004854 ORTHO05D005854 2.7e-19 99.0 60 80.0
BcaC04g19981 Brassica carinata HOM05D004854 ORTHO05D005854 2.7e-19 99.0 60 80.0
C02p14390 Brassica napus HOM05D004854 ORTHO05D005854 2.7e-19 99.0 60 80.0
BolC2t07563H Brassica oleracea HOM05D004854 ORTHO05D005854 2.7e-19 99.0 60 80.0
BolC9t57762H Brassica oleracea HOM05D004854 ORTHO05D005854 2.7e-19 99.0 60 80.0
BraA10t43555Z Brassica rapa HOM05D004854 ORTHO05D005854 2.7e-19 99.0 60 80.0
Oeu000974.1 Olea europaea HOM05D004854 ORTHO05D005854 2.7e-19 99.0 60 81.7
ClCG11G011930 Citrullus lanatus HOM05D004854 ORTHO05D005854 3.6e-19 98.6 60 81.7
SGA_v2.0_scaffold41G15867 Striga asiatica HOM05D004854 ORTHO05D005854 6.1e-19 97.8 60 78.3
THA.LOC104811780 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 6.1e-19 97.8 60 80.0
AT5G57290 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 7.9e-19 97.4 60 78.3
A02p08620 Brassica napus HOM05D004854 ORTHO05D005854 7.9e-19 97.4 60 78.3
BraA02t05931Z Brassica rapa HOM05D004854 ORTHO05D005854 7.9e-19 97.4 60 78.3
Cfa013427 Carpinus fangiana HOM05D004854 ORTHO05D005854 1.0e-18 97.1 60 76.7
MELO3C003999.2 Cucumis melo HOM05D004854 ORTHO05D005854 1.0e-18 97.1 60 80.0
CsaV3_2G008580 Cucumis sativus L. HOM05D004854 ORTHO05D005854 1.0e-18 97.1 60 80.0
Oeu064534.1 Olea europaea HOM05D004854 ORTHO05D005854 1.0e-18 97.1 60 78.3
A10p14720 Brassica napus HOM05D004854 ORTHO05D005854 1.4e-18 96.7 60 78.3
C09p49130 Brassica napus HOM05D004854 ORTHO05D005854 1.4e-18 96.7 60 78.3
Thhalv10026301m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 2.3e-18 95.9 60 76.7
Manes.06G021300 Manihot esculenta HOM05D004854 ORTHO05D005854 2.3e-18 95.9 61 80.3
Cpa.g.sc95.32 Carica papaya HOM05D004854 ORTHO05D005854 3.0e-18 95.5 60 76.7
Migut.J00819 Erythranthe guttata HOM05D004854 ORTHO05D005854 3.0e-18 95.5 60 75.0
Migut.L01900 Erythranthe guttata HOM05D004854 ORTHO05D005854 3.0e-18 95.5 60 75.0
Thhalv10015037m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 3.0e-18 95.5 60 76.7
Potri.009G032600 Populus trichocarpa HOM05D004854 ORTHO05D005854 3.0e-18 95.5 61 77.0
Oeu044703.1 Olea europaea HOM05D004854 ORTHO05D005854 3.9e-18 95.1 60 76.7
Sed0005886 Sechium edule HOM05D004854 ORTHO05D005854 3.9e-18 95.1 60 78.3
CANSAT11G1984 Cannabis sativa HOM05D004854 ORTHO05D005854 5.1e-18 94.7 60 76.7
Gohir.A05G003400 Gossypium hirsutum HOM05D004854 ORTHO05D005854 5.1e-18 94.7 60 75.0
Gohir.D05G003800 Gossypium hirsutum HOM05D004854 ORTHO05D005854 5.1e-18 94.7 60 75.0
Gorai.009G003400 Gossypium raimondii HOM05D004854 ORTHO05D005854 5.1e-18 94.7 60 75.0
Sabra09G0023200 Salix brachista HOM05D004854 ORTHO05D005854 5.1e-18 94.7 61 77.0
Sp7g23910 Schrenkiella parvula HOM05D004854 ORTHO05D005854 5.1e-18 94.7 60 75.0
Glyma.05G174300 Glycine max HOM05D004854 ORTHO05D005854 6.7e-18 94.4 60 80.0
Oeu044701.1 Olea europaea HOM05D004854 ORTHO05D005854 6.7e-18 94.4 60 76.7
AL7G27120 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 8.8e-18 94.0 60 75.0
MD13G1245200 Malus domestica HOM05D004854 ORTHO05D005854 8.8e-18 94.0 60 75.0
Sed0001835 Sechium edule HOM05D004854 ORTHO05D005854 8.8e-18 94.0 60 78.3
CARHR271090 Cardamine hirsuta HOM05D004854 ORTHO05D005854 1.1e-17 93.6 60 76.7
Ciclev10002863m.g Citrus clementina HOM05D004854 ORTHO05D005854 1.1e-17 93.6 61 75.4
Glyma.08G131500 Glycine max HOM05D004854 ORTHO05D005854 1.1e-17 93.6 60 78.3
MD16G1253100 Malus domestica HOM05D004854 ORTHO05D005854 1.1e-17 93.6 60 75.0
ATR0626G247 Amborella trichopoda HOM05D004854 ORTHO05D005854 1.5e-17 93.2 60 75.0
MSTRG.26532 Avicennia marina HOM05D004854 ORTHO05D005854 1.9e-17 92.8 60 73.3
RcHm_v2.0_Chr4g0400241 Rosa chinensis HOM05D004854 ORTHO05D005854 1.9e-17 92.8 60 78.3
MSTRG.19386 Avicennia marina HOM05D004854 ORTHO05D005854 2.5e-17 92.4 60 76.7
Duzib150G0904 Durio zibethinus HOM05D004854 ORTHO05D005854 2.5e-17 92.4 60 73.3
AUR62034880 Chenopodium quinoa HOM05D004854 ORTHO05D005854 3.3e-17 92.0 60 75.0
FvH4_4g07630 Fragaria vesca HOM05D004854 ORTHO05D005854 3.3e-17 92.0 60 75.0
FAN07G2001 Fragaria x ananassa HOM05D004854 ORTHO05D005854 3.3e-17 92.0 60 75.0
FAN12G2445 Fragaria x ananassa HOM05D004854 ORTHO05D005854 3.3e-17 92.0 60 75.0
FAN17G2475 Fragaria x ananassa HOM05D004854 ORTHO05D005854 3.3e-17 92.0 60 75.0
HanXRQChr10g0297881 Helianthus annuus HOM05D004854 ORTHO05D005854 3.3e-17 92.0 60 75.0
Os06g0701400 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 3.3e-17 92.0 60 71.7
PSO423G0276 Papaver somniferum HOM05D004854 ORTHO05D005854 3.3e-17 92.0 60 75.0
Potri.003G010200 Populus trichocarpa HOM05D004854 ORTHO05D005854 3.3e-17 92.0 61 75.4
Ah.05g168230 Amaranthus hybridus HOM05D004854 ORTHO05D005854 4.3e-17 91.7 60 75.0
Lsat_1_v5_gn_9_31040 Lactuca sativa HOM05D004854 ORTHO05D005854 4.3e-17 91.7 60 75.0
Sabra03G0005200 Salix brachista HOM05D004854 ORTHO05D005854 4.3e-17 91.7 61 73.8
AT4G25890 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 5.7e-17 91.3 60 71.7
CARHR233360 Cardamine hirsuta HOM05D004854 ORTHO05D005854 5.7e-17 91.3 60 73.3
Ah.16g108570 Amaranthus hybridus HOM05D004854 ORTHO05D005854 7.4e-17 90.9 60 75.0
AUR62026626 Chenopodium quinoa HOM05D004854 ORTHO05D005854 7.4e-17 90.9 60 75.0
PGR142G3975 Punica granatum HOM05D004854 ORTHO05D005854 7.4e-17 90.9 60 73.3
SalBow5G3614 Salvia bowleyana HOM05D004854 ORTHO05D005854 7.4e-17 90.9 60 76.7
unitig_899.g15189 Utricularia gibba HOM05D004854 ORTHO05D005854 7.4e-17 90.9 60 75.0
Aa31LG3G13170 Aethionema arabicum HOM05D004854 ORTHO05D005854 9.7e-17 90.5 60 73.3
Carub.0008s1780 Capsella rubella HOM05D004854 ORTHO05D005854 9.7e-17 90.5 60 71.7
PSO596G0050 Papaver somniferum HOM05D004854 ORTHO05D005854 9.7e-17 90.5 60 71.7
Carub.0007s1506 Capsella rubella HOM05D004854 ORTHO05D005854 1.3e-16 90.1 60 73.3
ECA247G3496 Erigeron canadensis HOM05D004854 ORTHO05D005854 1.3e-16 90.1 60 73.3
FAN22G0664 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.3e-16 90.1 60 73.3
BcaB08g36089 Brassica carinata HOM05D004854 ORTHO05D005854 1.7e-16 89.7 60 71.7
Phvul.002G259300 Phaseolus vulgaris HOM05D004854 ORTHO05D005854 1.7e-16 89.7 60 71.7
Prupe.1G079500 Prunus persica HOM05D004854 ORTHO05D005854 1.7e-16 89.7 60 73.3
DCAR_003035 Daucus carota HOM05D004854 ORTHO05D005854 2.2e-16 89.4 61 73.8
Os01g0231700 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 2.2e-16 89.4 60 68.3
VMungo0251G0447 Vigna mungo HOM05D004854 ORTHO05D005854 2.8e-16 89.0 60 71.7
Cc06_g22110 Coffea canephora HOM05D004854 ORTHO05D005854 3.7e-16 88.6 60 71.7
Thecc.09G180300 Theobroma cacao HOM05D004854 ORTHO05D005854 3.7e-16 88.6 60 71.7
SEGI_03932 Sequoiadendron giganteum HOM05D004854 ORTHO05D005854 4.8e-16 88.2 60 70.0
Lalb_Chr07g0185421 Lupinus albus HOM05D004854 ORTHO05D005854 6.3e-16 87.8 60 71.7
arahy.Tifrunner.gnm1.ann1.9B8HPN Arachis hypogaea HOM05D004854 ORTHO05D005854 1.4e-15 86.7 60 71.7
arahy.Tifrunner.gnm1.ann1.P9UE85 Arachis hypogaea HOM05D004854 ORTHO05D005854 1.4e-15 86.7 60 71.7
Ca_17781_v3 Cicer arietinum L. HOM05D004854 ORTHO05D005854 1.4e-15 86.7 60 71.7
Psat7g058720 Pisum sativum HOM05D004854 ORTHO05D005854 1.8e-15 86.3 60 70.0
RcHm_v2.0_Chr1g0341131 Rosa chinensis HOM05D004854 ORTHO05D005854 2.4e-15 85.9 60 71.7
Lj4g0022898 Lotus japonicus HOM05D004854 ORTHO05D005854 3.1e-15 85.5 60 70.0
Zm00001eb226990 Zea mays HOM05D004854 ORTHO05D005854 3.1e-15 85.5 60 66.7
Medtr8g089790 Medicago truncatula HOM05D004854 ORTHO05D005854 4.1e-15 85.1 60 68.3
PSO596G0067 Papaver somniferum HOM05D004854 ORTHO05D005854 4.1e-15 85.1 60 68.3
PSO423G0052 Papaver somniferum HOM05D004854 ORTHO05D005854 2.0e-14 82.8 60 66.7
Thecc.01G294400 Theobroma cacao HOM05D004854 ORTHO05D005854 2.0e-14 82.8 60 66.7
TPR.G6298 Trifolium pratense HOM05D004854 ORTHO05D005854 2.6e-14 82.4 60 65.0
Zm00001eb272850 Zea mays HOM05D004854 ORTHO05D005854 3.4e-14 82.0 61 65.6
arahy.Tifrunner.gnm1.ann1.XNR1AK Arachis hypogaea HOM05D004854 ORTHO05D005854 4.5e-14 81.6 60 63.3
Lj6g0003516 Lotus japonicus HOM05D004854 ORTHO05D005854 4.5e-14 81.6 60 60.0
Nn2g12744 Nelumbo nucifera HOM05D004854 ORTHO05D005854 4.5e-14 81.6 46 87.0
arahy.Tifrunner.gnm1.ann1.P39ID1 Arachis hypogaea HOM05D004854 ORTHO05D005854 7.7e-14 80.9 60 66.7
arahy.Tifrunner.gnm1.ann1.90PU0B Arachis hypogaea HOM05D004854 ORTHO05D005854 1.0e-13 80.5 60 66.7
Lalb_Chr13g0295841 Lupinus albus HOM05D004854 ORTHO05D005854 1.7e-13 79.7 60 66.7
Hund26676 Selenicereus undatus HOM05D004854 ORTHO05D005854 2.2e-13 79.3 60 60.0
arahy.Tifrunner.gnm1.ann1.AP25S4 Arachis hypogaea HOM05D004854 ORTHO05D005854 2.9e-13 79.0 60 61.7
HPP92_026146 Vanilla planifolia HOM05D003573 ORTHO05D004204 5.0e-13 78.2 56 69.6
SGA_v2.0_scaffold46G17340 Striga asiatica HOM05D004854 ORTHO05D005854 9.4e-12 73.9 60 63.3
Pp3c22_2920 Physcomitrium patens HOM05D004854 ORTHO05D005854 2.7e-11 72.4 62 61.3
Duzib170G0267 Durio zibethinus HOM05D004854 ORTHO05D005854 1.8e-10 69.7 42 76.2
COL.COLO4_25466 Corchorus olitorius HOM05D004854 ORTHO05D005854 2.3e-10 69.3 42 73.8
Pp3c21_16160 Physcomitrium patens HOM05D004854 ORTHO05D005854 3.0e-10 68.9 62 56.5
C03p15060 Brassica napus HOM05D004854 ORTHO05D005854 6.7e-10 67.8 45 77.8
Duzib168G1583 Durio zibethinus HOM05D004854 ORTHO05D005854 1.1e-09 67.0 46 67.4
BolC3t13948H Brassica oleracea HOM05D004854 ORTHO05D005854 2.6e-09 65.9 45 75.6
Mapoly0006s0174 Marchantia polymorpha HOM05D004854 ORTHO05D005854 3.3e-09 65.5 62 51.6
SMO172G0233 Selaginella moellendorffii HOM05D004854 ORTHO05D005854 1.7e-08 63.2 60 50.0
arahy.Tifrunner.gnm1.ann1.63P7R9 Arachis hypogaea HOM05D000970 ORTHO05D000788 5.3e-07 58.2 42 69.0


User provided reference genes

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