Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 1.1e-50 203.0 102 100.0
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 6.7e-40 167.2 93 88.2
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 6.7e-40 167.2 93 88.2
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 1.4e-29 132.9 81 80.2
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.1e-25 119.0 104 60.6
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.1e-25 119.0 104 60.6
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 6.1e-25 117.5 104 59.6
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 6.1e-25 117.5 104 59.6
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.0e-24 116.7 104 59.6
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 1.0e-24 116.7 107 57.0
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 3.0e-24 115.2 101 55.4
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 3.0e-24 115.2 107 55.1
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 3.0e-24 115.2 104 56.7
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 6.8e-24 114.0 103 55.3
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 8.9e-24 113.6 104 55.8
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 1.2e-23 113.2 118 52.5
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 4.4e-23 111.3 85 64.7
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 4.4e-23 111.3 106 55.7
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 5.7e-23 110.9 74 71.6
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 7.5e-23 110.5 77 67.5
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 9.8e-23 110.2 104 53.8
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 1.3e-22 109.8 74 71.6
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 1.3e-22 109.8 104 54.8
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 1.3e-22 109.8 97 58.8
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 1.7e-22 109.4 106 54.7
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 2.2e-22 109.0 104 52.9
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 2.2e-22 109.0 104 56.7
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 2.8e-22 108.6 106 50.9
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 3.7e-22 108.2 104 52.9
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 6.3e-22 107.5 105 54.3
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 8.3e-22 107.1 106 50.9
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 8.3e-22 107.1 106 50.9
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 8.3e-22 107.1 106 50.9
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 1.1e-21 106.7 77 63.6
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 1.4e-21 106.3 91 62.6
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 2.4e-21 105.5 77 62.3
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 2.4e-21 105.5 77 63.6
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 3.1e-21 105.1 104 52.9
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 4.1e-21 104.8 76 63.2
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 5.4e-21 104.4 104 53.8
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 7.0e-21 104.0 96 53.1
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 2.0e-20 102.4 76 64.5
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 5.9e-20 100.9 104 50.0
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 2.9e-19 98.6 77 59.7
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 3.8e-19 98.2 101 49.5
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 3.8e-19 98.2 101 49.5
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 6.6e-19 97.4 102 50.0
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 6.6e-19 97.4 104 50.0
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 6.6e-19 97.4 104 48.1
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 8.6e-19 97.1 102 49.0
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 1.1e-18 96.7 102 47.1
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 1.1e-18 96.7 90 53.3
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 1.5e-18 96.3 107 46.7
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 1.5e-18 96.3 102 49.0
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.9e-18 95.9 73 60.3
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 2.5e-18 95.5 102 49.0
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 2.5e-18 95.5 74 58.1
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 3.3e-18 95.1 104 47.1
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 5.6e-18 94.4 105 47.6
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 5.6e-18 94.4 77 61.0
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 9.5e-18 93.6 104 49.0
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 1.6e-17 92.8 72 62.5
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 2.8e-17 92.0 106 46.2
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 2.8e-17 92.0 92 53.3
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 3.6e-17 91.7 103 51.5
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 3.6e-17 91.7 69 63.8
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 4.7e-17 91.3 101 46.5
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 8.0e-17 90.5 103 45.6
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 8.0e-17 90.5 101 45.5
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 1.0e-16 90.1 77 57.1
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 1.4e-16 89.7 78 57.7
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 1.8e-16 89.4 104 46.2
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 2.3e-16 89.0 93 57.0
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 1.2e-15 86.7 105 45.7
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 1.2e-15 86.7 106 40.6
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 1.5e-15 86.3 106 38.7
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 2.0e-15 85.9 106 39.6
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 2.0e-15 85.9 106 39.6
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.6e-15 85.5 105 44.8
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 3.4e-15 85.1 76 48.7
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 3.4e-15 85.1 76 48.7
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 3.4e-15 85.1 76 48.7
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 3.4e-15 85.1 76 50.0
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 3.4e-15 85.1 104 47.1
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 3.4e-15 85.1 104 47.1
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 3.4e-15 85.1 104 47.1
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 4.4e-15 84.7 106 38.7
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 4.4e-15 84.7 106 38.7
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 4.4e-15 84.7 106 38.7
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 5.8e-15 84.3 77 53.2
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 5.8e-15 84.3 105 43.8
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 9.8e-15 83.6 106 37.7
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.3e-14 83.2 77 51.9
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.3e-14 83.2 105 42.9
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.3e-14 83.2 105 42.9
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 2.2e-14 82.4 91 51.6
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 2.9e-14 82.0 104 44.2
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 3.7e-14 81.6 76 47.4
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 3.7e-14 81.6 108 43.5
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 3.7e-14 81.6 104 45.2
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 4.9e-14 81.3 74 52.7
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 8.3e-14 80.5 74 52.7
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 1.8e-13 79.3 98 41.8
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 2.4e-13 79.0 106 41.5
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 2.4e-13 79.0 98 40.8
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 7.8e-12 73.9 76 50.0
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 7.8e-12 73.9 45 77.8
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 5.0e-11 71.2 84 47.6
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 6.6e-11 70.9 105 41.0
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 8.6e-11 70.5 73 50.7
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 4.3e-10 68.2 81 46.9
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 2.1e-09 65.9 84 40.5
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 4.0e-08 61.6 62 53.2
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 5.8e-07 57.8 74 39.2
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 1.7e-06 56.2 56 42.9
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 1.7e-06 56.2 54 50.0
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 4.9e-06 54.7 76 36.8
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 4.9e-06 54.7 63 46.0


User provided reference genes

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