Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 2073.9 973 100.0
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1757.3 958 84.0
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1754.6 975 82.7
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1754.2 973 82.1
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1738.0 974 80.9
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1734.5 976 81.0
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1734.2 972 81.3
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1730.3 974 80.7
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1729.1 974 81.0
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1721.8 974 80.4
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1711.8 976 80.2
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1708.7 974 80.8
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1707.6 988 79.6
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1707.6 974 80.8
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1695.2 974 80.4
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1689.5 975 79.7
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1686.8 974 79.9
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1686.8 977 79.1
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1685.2 973 79.4
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1677.1 971 78.7
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1676.0 975 78.7
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1675.6 971 78.6
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1675.6 976 78.6
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1672.5 972 79.9
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1669.8 973 78.3
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1668.7 966 78.8
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1665.2 974 77.9
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1661.4 970 78.7
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1657.9 977 78.4
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1657.5 978 78.4
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1654.0 977 78.4
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1649.4 978 78.3
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1645.6 966 78.1
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1642.5 973 77.4
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1642.1 983 77.3
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1640.9 966 78.2
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1640.6 968 78.5
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1639.4 975 77.1
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1637.5 975 77.0
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1637.5 964 78.0
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1635.2 964 78.5
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1632.8 964 78.0
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1630.5 952 79.1
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1629.8 972 78.0
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1628.6 979 77.1
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1628.2 975 76.7
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1626.7 966 77.7
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1625.1 966 77.1
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1624.8 973 76.9
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1624.8 965 77.6
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1624.8 973 77.2
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1620.1 964 77.8
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1619.4 972 76.9
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1619.0 973 76.9
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1617.1 965 77.2
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1615.1 971 77.0
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1614.0 973 76.7
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1610.1 962 76.9
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1607.8 978 76.2
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1606.3 973 76.8
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1603.6 977 75.1
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1602.0 976 75.7
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1602.0 941 78.7
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1601.6 973 76.0
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1601.3 982 75.9
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1600.9 967 76.1
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1600.5 966 76.8
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1599.3 970 75.3
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1597.0 971 75.8
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1595.9 974 74.8
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1594.7 973 75.4
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1590.5 925 79.0
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1587.4 975 75.2
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1584.3 975 75.6
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1581.6 969 75.7
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1581.2 969 76.0
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1580.5 976 74.2
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1577.4 968 75.7
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1576.2 971 75.4
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1573.9 973 75.0
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1572.4 971 74.6
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1571.6 967 74.8
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1570.8 968 75.3
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1568.1 987 73.6
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1566.2 877 81.9
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1560.8 978 73.9
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1558.9 982 73.6
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1558.1 976 73.0
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1551.6 958 74.8
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1545.8 978 73.5
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1543.5 972 73.1
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1538.9 978 72.0
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1536.9 968 74.1
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1530.4 977 72.7
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1525.4 996 72.2
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1501.9 972 71.2
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1498.0 980 71.3
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1492.2 871 77.7
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1491.9 981 70.8
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1486.5 983 70.8
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1486.1 985 70.5
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1484.9 978 70.7
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1476.8 977 71.1
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1475.3 978 70.0
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1474.9 982 70.5
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1472.2 978 70.2
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1471.1 850 78.9
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1467.2 979 70.2
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1467.2 979 70.2
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1459.1 977 69.4
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1459.1 977 69.5
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1450.3 845 77.9
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1449.1 979 69.5
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1448.0 979 69.6
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1448.0 979 69.5
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1446.4 978 69.7
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1385.2 1010 63.8
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1373.6 978 66.8
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1367.1 761 80.6
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1353.2 980 66.7
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1352.4 977 65.1
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1324.3 980 65.2
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1318.9 769 78.3
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1285.8 789 75.7
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1276.9 851 69.2
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1272.7 788 74.9
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1268.8 786 74.3
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 0.0e+00 1127.9 682 75.5
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 0.0e+00 1091.3 977 54.8
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 6.4e-305 1050.8 964 52.7
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 1.6e-295 1019.6 703 69.6
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 8.1e-284 980.7 961 51.9
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 7.1e-280 967.6 958 51.1
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 5.6e-269 931.4 976 49.3
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.1e-263 912.9 563 75.0
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 7.2e-240 834.7 840 50.2
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.2e-212 743.4 402 80.8
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 2.1e-146 524.2 288 83.7
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 1.4e-131 474.9 412 58.0
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 2.1e-122 444.5 343 63.0
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 8.0e-114 416.0 372 57.3
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 1.1e-107 395.6 215 83.7
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.5e-91 342.0 192 80.7
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.6e-90 338.6 202 72.3
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 1.8e-89 335.1 275 59.6
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 3.5e-77 294.3 159 83.6
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 9.5e-75 286.2 214 64.0
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 5.4e-70 270.4 156 77.6
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 4.7e-66 257.3 143 80.4
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 4.4e-64 250.8 647 29.4
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 7.1e-54 216.9 368 39.7
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 2.0e-48 198.7 149 62.4
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 3.6e-42 177.9 163 54.0
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 5.3e-41 174.1 776 23.7
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 9.0e-41 173.3 148 57.4
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 4.5e-40 171.0 94 79.8
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 2.2e-39 168.7 148 55.4
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 3.8e-39 167.9 92 84.8
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 3.0e-36 158.3 119 63.0
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 5.6e-35 154.1 92 77.2
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 3.7e-26 124.8 88 64.8
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 4.0e-25 121.3 118 54.2
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 1.5e-24 119.4 183 38.3
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 5.5e-22 110.9 184 35.9
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 3.5e-21 108.2 127 45.7
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.2e-16 93.2 188 32.4
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 4.5e-16 91.3 71 60.6
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 1.7e-15 89.4 114 45.6
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 1.6e-13 82.8 47 76.6
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 2.0e-11 75.9 46 67.4
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 3.7e-10 71.6 76 51.3
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 3.4e-08 65.1 44 63.6
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 1.9e-06 59.3 25 96.0


User provided reference genes

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