Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2809 Trochodendron aralioides HOM05D002270 ORTHO05D002866 0.0e+00 3278.8 1680 100.0
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 0.0e+00 1931.0 1670 62.5
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 0.0e+00 1682.2 1680 56.8
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 0.0e+00 1651.0 1675 56.1
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 0.0e+00 1650.2 1677 55.9
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 0.0e+00 1629.4 1671 54.9
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 0.0e+00 1622.1 1680 55.4
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 0.0e+00 1620.1 1677 55.3
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 0.0e+00 1602.4 1745 54.2
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 0.0e+00 1568.5 1694 53.2
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 0.0e+00 1530.4 1679 53.0
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 0.0e+00 1495.7 1692 52.0
vmacro22216 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 0.0e+00 1478.0 1718 50.6
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 0.0e+00 1473.0 1694 51.5
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 0.0e+00 1466.1 1697 50.3
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 0.0e+00 1448.3 1673 51.5
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 0.0e+00 1446.8 1687 51.0
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 0.0e+00 1445.3 1757 50.1
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 0.0e+00 1440.6 1661 50.3
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 0.0e+00 1424.1 1683 49.7
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 0.0e+00 1421.0 1656 49.4
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 0.0e+00 1413.3 1686 50.0
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 0.0e+00 1412.1 1656 49.5
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 0.0e+00 1407.5 1703 48.9
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 0.0e+00 1391.7 1682 48.6
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 0.0e+00 1384.4 1694 49.2
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 0.0e+00 1378.6 1665 48.6
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 0.0e+00 1366.7 1678 48.6
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 0.0e+00 1363.6 1679 49.3
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 0.0e+00 1339.7 1680 48.5
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 0.0e+00 1290.8 1668 46.8
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 0.0e+00 1258.8 1678 45.5
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 0.0e+00 1253.0 1664 45.3
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 0.0e+00 1250.7 1683 46.3
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 0.0e+00 1248.4 1678 44.9
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 0.0e+00 1245.3 1657 45.1
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 0.0e+00 1245.0 1680 44.9
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 0.0e+00 1239.2 1695 46.4
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 0.0e+00 1214.5 1678 44.6
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 0.0e+00 1200.3 1675 43.8
ECA232G3855 Erigeron canadensis HOM05D002270 ORTHO05D002866 0.0e+00 1182.5 1701 42.6
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 0.0e+00 1178.3 1683 44.3
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 0.0e+00 1176.4 1681 43.7
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 0.0e+00 1176.4 1687 42.9
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 0.0e+00 1167.9 1676 43.5
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 0.0e+00 1164.8 1668 42.6
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 0.0e+00 1155.2 1688 44.7
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 0.0e+00 1144.8 1650 43.3
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 0.0e+00 1142.9 1693 42.0
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 0.0e+00 1142.1 1659 42.7
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 0.0e+00 1139.4 1651 43.5
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 0.0e+00 1136.7 1680 42.1
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 0.0e+00 1136.7 1788 41.3
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 0.0e+00 1127.1 2001 37.7
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 0.0e+00 1125.5 1694 43.0
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 0.0e+00 1124.0 1683 42.1
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 0.0e+00 1115.9 1691 42.5
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 0.0e+00 1115.1 1689 43.3
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 0.0e+00 1108.6 1689 42.4
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 0.0e+00 1104.4 1646 42.8
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 0.0e+00 1096.3 1687 43.0
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 0.0e+00 1088.2 1674 41.4
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 0.0e+00 1085.9 1689 42.7
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 0.0e+00 1085.5 1669 41.9
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 0.0e+00 1083.2 1683 41.2
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 0.0e+00 1079.7 1685 41.7
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 1.1e-311 1073.9 1693 41.1
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 2.3e-311 1072.8 1689 42.5
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 1.4e-310 1070.5 1688 41.4
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 3.1e-307 1059.3 1668 40.9
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 2.9e-305 1052.7 1656 40.8
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 1.0e-302 1044.3 1689 41.8
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 7.4e-301 1038.1 1706 40.3
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 5.9e-290 1001.9 1677 39.9
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 3.0e-286 989.6 1684 40.0
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 1.1e-285 987.6 1681 40.0
Nitab4.5_0003025g0020 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.9e-285 986.9 1675 39.3
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 2.9e-281 973.0 1692 38.7
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 2.6e-277 959.9 1679 39.4
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 2.0e-274 950.3 1675 39.2
Sp5g22050 Schrenkiella parvula HOM05D002270 ORTHO05D002866 5.9e-274 948.7 1679 39.1
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 5.3e-267 925.6 1800 36.8
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 1.0e-265 921.4 1676 38.5
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 4.7e-263 912.5 1675 38.1
TPR.G9775 Trifolium pratense HOM05D002270 ORTHO05D002866 1.4e-262 911.0 1580 38.7
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 1.2e-255 887.9 1609 37.2
Ah.08g216550 Amaranthus hybridus HOM05D002270 ORTHO05D002866 2.7e-255 886.7 1714 35.9
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 1.0e-254 884.8 1669 37.2
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 3.1e-251 873.2 1675 37.0
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 2.0e-245 854.0 1685 36.2
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 2.6e-245 853.6 1675 36.2
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 2.3e-233 813.9 1695 35.3
BcaNung06980 Brassica carinata HOM05D002270 ORTHO05D002866 1.9e-232 810.8 1677 35.6
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 3.4e-213 746.9 1709 34.1
VMungo0464G0658 Vigna mungo HOM05D002270 ORTHO05D002866 9.6e-192 675.6 1260 38.2
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 2.6e-181 641.0 1673 32.2
CDE12G0087 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 7.9e-162 576.2 1576 30.5
SEGI_33198 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 5.7e-160 570.1 939 39.0
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 9.4e-155 552.7 1581 31.9
MBI17_g19031_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D002866 7.0e-150 536.6 713 48.1
C05p38590 Brassica napus HOM05D002270 ORTHO05D002866 2.0e-141 508.4 1495 31.1
Cpa.g.sc1872.2 Carica papaya HOM05D002270 ORTHO05D002866 5.2e-137 493.8 603 48.6
Cpa.g.sc30.6 Carica papaya HOM05D002270 ORTHO05D002866 1.2e-133 482.6 492 55.3
BolC5t32597H Brassica oleracea HOM05D002270 ORTHO05D002866 3.7e-127 461.1 1265 32.4
QL01p054541 Quercus lobata HOM05D002270 ORTHO05D002866 1.2e-125 456.1 486 54.3
QL03p018747 Quercus lobata HOM05D002270 ORTHO05D002866 7.3e-123 446.8 592 50.2
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 4.7e-122 444.1 1788 25.7
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 1.6e-114 419.1 1691 26.4
TPR.G29949 Trifolium pratense HOM05D002270 ORTHO05D002866 7.5e-112 410.2 773 36.0
SEGI_39597 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 9.5e-107 393.3 770 36.4
SEGI_22741 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.9e-102 379.0 489 44.2
ECA067G0001 Erigeron canadensis HOM05D002270 ORTHO05D002866 1.7e-100 372.5 619 37.6
VMungo0464G1105 Vigna mungo HOM05D002270 ORTHO05D002866 8.1e-90 337.0 362 50.3
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 2.4e-89 335.5 1705 26.0
Aqoxy6G02935 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 6.4e-79 300.8 833 31.5
SEGI_08864 Sequoiadendron giganteum HOM05D002270 ORTHO05D012099 1.9e-75 289.3 544 35.7
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 1.3e-68 266.5 376 43.1
TPR.G10921 Trifolium pratense HOM05D002270 ORTHO05D002866 1.1e-67 263.5 455 41.8
CBR_g741 Chara braunii HOM05D002270 ORTHO05D002866 1.3e-63 250.0 1584 22.2
SHI16818 Sapria himalayana HOM05D002270 ORTHO05D012099 2.1e-61 242.7 426 35.4
COL.COLO4_12565 Corchorus olitorius HOM05D002270 ORTHO05D002866 1.2e-56 226.9 235 58.3
Hma1.2p1_0291F.1_g115290 Hydrangea macrophylla HOM05D002270 ORTHO05D002866 1.4e-54 219.9 250 52.4
SEGI_24649 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.4e-54 219.9 714 30.0
PSO210G4815 Papaver somniferum HOM05D002270 ORTHO05D002866 4.2e-54 218.4 364 45.3
PSO675G5043 Papaver somniferum HOM05D010434 ORTHO05D012099 2.4e-49 202.6 506 30.2
SHI16817 Sapria himalayana HOM05D002270 ORTHO05D002866 4.1e-49 201.8 264 46.6
FAN09G1018 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.5e-48 199.9 426 39.7
Aqoxy6G02933 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 2.0e-48 199.5 197 56.3
PSO675G8751 Papaver somniferum HOM05D010434 ORTHO05D012099 2.5e-46 192.6 505 30.3
PSO541G6407 Papaver somniferum HOM05D010434 ORTHO05D012099 5.5e-46 191.4 526 30.2
PSO675G5403 Papaver somniferum HOM05D010434 ORTHO05D012099 4.7e-45 188.3 514 30.4
Rhsim04G0127600 Rhododendron simsii HOM05D002270 ORTHO05D012099 1.8e-44 186.4 397 34.3
PSO675G4518 Papaver somniferum HOM05D010434 ORTHO05D012099 3.9e-44 185.3 493 30.8
PSO675G1207 Papaver somniferum HOM05D010434 ORTHO05D012099 6.7e-44 184.5 522 29.7
Aqoxy6G02934 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 1.1e-43 183.7 320 39.4
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 1.1e-43 183.7 1248 22.0
Nn5g26982 Nelumbo nucifera HOM05D002270 ORTHO05D012099 2.2e-42 179.5 147 61.2
PSO541G0642 Papaver somniferum HOM05D010434 ORTHO05D012099 6.3e-42 177.9 472 29.9
COL.COLO4_12566 Corchorus olitorius HOM05D002270 ORTHO05D002866 1.7e-39 169.9 112 73.2
PSO675G7191 Papaver somniferum HOM05D010434 ORTHO05D012099 3.2e-38 165.6 569 28.3
SHI16816 Sapria himalayana HOM05D002270 ORTHO05D002866 6.1e-37 161.4 303 38.6
ECA067G0003 Erigeron canadensis HOM05D002270 ORTHO05D002866 2.6e-35 156.0 247 41.7
PSO675G7526 Papaver somniferum HOM05D010434 ORTHO05D012099 3.3e-35 155.6 534 27.5
PGSC0003DMG400044228 Solanum tuberosum HOM05D002270 ORTHO05D002866 2.1e-29 136.3 318 37.7
PGSC0003DMG400021645 Solanum tuberosum HOM05D002270 ORTHO05D002866 3.1e-25 122.5 240 40.0
PSO675G8523 Papaver somniferum HOM05D010434 ORTHO05D012099 5.4e-25 121.7 365 27.7
COL.COLO4_30772 Corchorus olitorius HOM05D002270 ORTHO05D002866 3.2e-22 112.5 181 42.5
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 5.5e-22 111.7 1359 19.7
PSO832G1385 Papaver somniferum HOM05D010434 ORTHO05D012099 7.2e-22 111.3 305 32.8
MBI05_g33098_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D030055 1.4e-20 107.1 96 58.3
COL.COLO4_26664 Corchorus olitorius HOM05D002270 ORTHO05D011956 6.8e-20 104.8 74 73.0
COL.COLO4_16853 Corchorus olitorius HOM05D000629 ORTHO05D016154 1.2e-19 104.0 248 31.0
PSO541G1570 Papaver somniferum HOM05D010434 ORTHO05D012099 7.5e-19 101.3 279 27.6
QL01p054500 Quercus lobata HOM05D002270 ORTHO05D002866 1.7e-18 100.1 75 66.7
PSO017G6479 Papaver somniferum HOM05D010434 ORTHO05D012099 4.5e-16 92.0 274 31.0
Dinv37884 Davidia involucrata HOM05D002270 ORTHO05D002866 5.0e-15 88.6 99 40.4
PSO591G0123 Papaver somniferum HOM05D010434 ORTHO05D012099 3.3e-14 85.9 174 37.4
COL.COLO4_12567 Corchorus olitorius HOM05D002270 ORTHO05D044752 1.2e-13 84.0 145 38.6
PSO591G0064 Papaver somniferum HOM05D010434 ORTHO05D012099 3.6e-13 82.4 223 30.5
Lsat_1_v5_gn_7_50160 Lactuca sativa HOM05D002270 ORTHO05D003355 4.7e-13 82.0 107 38.3
TPR.G40383 Trifolium pratense HOM05D002270 ORTHO05D002866 6.1e-13 81.6 164 32.3
PSO407G0222 Papaver somniferum HOM05D010434 ORTHO05D012099 2.3e-12 79.7 225 32.4
BcaB03g13736 Brassica carinata HOM05D002270 ORTHO05D002866 6.8e-12 78.2 98 42.9
MBI01_g40849_MAGBIO Magnolia biondii HOM05D000031 ORTHO05D000030 2.0e-11 76.6 53 69.8
MBI08_g04811_MAGBIO Magnolia biondii HOM05D018116 ORTHO05D025787 2.0e-11 76.6 106 42.5
Os10g0456900 Oryza sativa ssp. japonica HOM05D002270 ORTHO05D002866 3.4e-11 75.9 204 28.4
Lsat_1_v5_gn_8_57560 Lactuca sativa HOM05D002270 ORTHO05D044752 5.7e-11 75.1 163 32.5
PSO541G3427 Papaver somniferum HOM05D010434 ORTHO05D012099 1.3e-10 73.9 289 26.3
SEGI_09123 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 2.9e-10 72.8 156 34.6
TPR.G39826 Trifolium pratense HOM05D002270 ORTHO05D002866 3.7e-10 72.4 159 31.4
MBI15_g14940_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D030055 4.1e-09 68.9 53 64.2
HanXRQChr14g0434531 Helianthus annuus HOM05D002270 ORTHO05D002866 1.2e-08 67.4 60 51.7
Lsat_1_v5_gn_3_31841 Lactuca sativa HOM05D000640 ORTHO05D011956 2.0e-08 66.6 56 53.6
HanXRQChr16g0507711 Helianthus annuus HOM05D002270 ORTHO05D002866 4.6e-08 65.5 64 46.9
MBI14_g10644_MAGBIO Magnolia biondii HOM05D018116 ORTHO05D030055 4.6e-08 65.5 48 66.7
MBI15_g35156_MAGBIO Magnolia biondii HOM05D018116 ORTHO05D025787 3.9e-07 62.4 61 54.1
Lsat_1_v5_gn_4_95801 Lactuca sativa HOM05D000640 ORTHO05D229177 6.6e-07 61.6 75 42.7
MBI18_g42566_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D002866 3.3e-06 59.3 68 44.1
Dinv04906 Davidia involucrata HOM05D002270 ORTHO05D012099 4.3e-06 58.9 41 68.3
MBI07_g06914_MAGBIO Magnolia biondii HOM05D018116 ORTHO05D025787 4.3e-06 58.9 48 62.5


User provided reference genes

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