Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 5.3e-37 157.1 77 100.0
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 5.8e-36 153.7 77 97.4
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 1.0e-32 142.9 77 89.6
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 3.9e-32 141.0 77 88.3
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 6.7e-32 140.2 77 87.0
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 8.7e-32 139.8 77 85.7
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 8.7e-32 139.8 77 87.0
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.9e-31 138.7 77 85.7
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 4.3e-31 137.5 77 83.1
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 5.6e-31 137.1 77 83.1
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 7.4e-31 136.7 77 83.1
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 7.4e-31 136.7 77 83.1
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 7.4e-31 136.7 77 83.1
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 7.4e-31 136.7 76 84.2
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 7.4e-31 136.7 77 80.5
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 9.6e-31 136.3 77 85.7
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 9.6e-31 136.3 77 84.4
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 9.6e-31 136.3 77 84.4
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.6e-30 135.6 77 83.1
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 1.6e-30 135.6 75 85.3
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 2.1e-30 135.2 77 83.1
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 2.1e-30 135.2 77 81.8
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 2.1e-30 135.2 77 85.7
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.8e-30 134.8 77 80.5
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 2.8e-30 134.8 77 84.4
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 6.2e-30 133.7 77 79.2
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 6.2e-30 133.7 77 79.2
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 6.2e-30 133.7 77 84.4
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 6.2e-30 133.7 77 81.8
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 8.1e-30 133.3 77 83.1
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 8.1e-30 133.3 77 83.1
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 1.1e-29 132.9 77 81.8
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.4e-29 132.5 77 83.1
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.4e-29 132.5 77 80.5
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.4e-29 132.5 77 80.5
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 1.8e-29 132.1 77 84.4
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 1.8e-29 132.1 76 80.3
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 2.4e-29 131.7 77 80.5
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 2.4e-29 131.7 77 83.1
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 3.1e-29 131.3 77 85.7
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 3.1e-29 131.3 77 83.1
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 3.1e-29 131.3 77 81.8
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 4.0e-29 131.0 77 79.2
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 4.0e-29 131.0 77 81.8
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 4.0e-29 131.0 77 79.2
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 4.0e-29 131.0 77 83.1
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 5.3e-29 130.6 77 81.8
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 5.3e-29 130.6 77 81.8
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 5.3e-29 130.6 77 79.2
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.3e-29 130.6 77 79.2
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.3e-29 130.6 77 79.2
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.3e-29 130.6 77 79.2
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 6.9e-29 130.2 77 83.1
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 6.9e-29 130.2 77 76.6
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 6.9e-29 130.2 77 80.5
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 9.0e-29 129.8 77 81.8
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 9.0e-29 129.8 77 81.8
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 9.0e-29 129.8 77 81.8
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 9.0e-29 129.8 77 81.8
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 9.0e-29 129.8 77 81.8
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 9.0e-29 129.8 77 81.8
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 9.0e-29 129.8 77 83.1
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 9.0e-29 129.8 77 80.5
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 1.2e-28 129.4 76 78.9
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 2.0e-28 128.6 75 82.7
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 2.0e-28 128.6 77 79.2
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 2.0e-28 128.6 75 81.3
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 2.6e-28 128.3 77 79.2
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 2.6e-28 128.3 77 80.5
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 2.6e-28 128.3 77 81.8
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 3.4e-28 127.9 77 79.2
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 3.4e-28 127.9 77 79.2
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 3.4e-28 127.9 77 80.5
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 4.5e-28 127.5 77 77.9
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 4.5e-28 127.5 77 77.9
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 4.5e-28 127.5 77 77.9
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 4.5e-28 127.5 77 77.9
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 5.8e-28 127.1 77 77.9
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.0e-27 126.3 77 79.2
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 1.0e-27 126.3 77 81.8
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 1.3e-27 125.9 77 80.5
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 1.3e-27 125.9 77 76.6
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 1.3e-27 125.9 77 80.5
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 1.7e-27 125.6 77 76.6
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 1.7e-27 125.6 77 76.6
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 1.7e-27 125.6 77 76.6
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 1.7e-27 125.6 77 75.3
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 2.2e-27 125.2 77 79.2
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 4.9e-27 124.0 77 77.9
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 6.5e-27 123.6 77 79.2
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 6.5e-27 123.6 77 72.7
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 8.4e-27 123.2 77 74.0
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 8.4e-27 123.2 77 77.9
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 1.4e-26 122.5 77 75.3
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.4e-26 122.5 77 75.3
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 1.9e-26 122.1 77 75.3
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 2.5e-26 121.7 77 74.0
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 2.5e-26 121.7 77 72.7
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 3.2e-26 121.3 77 75.3
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 4.2e-26 120.9 77 72.7
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 4.2e-26 120.9 77 72.7
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 5.5e-26 120.6 75 72.0
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 9.3e-26 119.8 75 74.7
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.2e-25 119.4 76 75.0
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 1.6e-25 119.0 77 74.0
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 2.1e-25 118.6 77 72.7
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 2.1e-25 118.6 75 76.0
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 2.1e-25 118.6 77 74.0
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 3.5e-25 117.9 73 78.1
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 3.5e-25 117.9 77 74.0
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 4.6e-25 117.5 77 71.4
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 6.0e-25 117.1 77 72.7
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 6.0e-25 117.1 77 74.0
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 7.9e-25 116.7 77 72.7
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 3.0e-24 114.8 77 71.4
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 3.0e-24 114.8 77 71.4
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 3.9e-24 114.4 77 71.4
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 5.1e-24 114.0 76 75.0
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 6.7e-24 113.6 76 72.4
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.1e-23 112.8 70 72.9
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.5e-23 111.7 70 72.9
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 4.3e-23 110.9 77 62.3
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 4.3e-23 110.9 77 64.9
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 6.3e-22 107.1 77 62.3
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 8.2e-22 106.7 77 62.3
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 2.4e-21 105.1 77 63.6
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 2.4e-21 105.1 65 75.4
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 5.3e-21 104.0 66 75.8
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 5.3e-21 104.0 77 61.0
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 6.9e-21 103.6 77 61.0
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 6.9e-21 103.6 77 61.0
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 9.0e-21 103.2 77 61.0
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.2e-20 102.8 77 61.0
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 1.5e-20 102.4 77 61.0
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 3.4e-20 101.3 77 64.9
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.8e-19 97.8 75 60.0
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 8.5e-19 96.7 75 61.3
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 3.0e-16 88.2 77 57.1
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 6.3e-14 80.5 72 52.8
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 4.1e-13 77.8 51 68.6
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 1.2e-12 76.3 73 54.8
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 2.7e-09 65.1 65 49.2
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.8e-08 62.4 63 49.2
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.0e-07 58.9 33 81.8
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 6.3e-06 53.9 44 54.5


User provided reference genes

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