Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.7e-301 1038.5 505 100.0
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.5e-273 945.7 504 90.5
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 1.3e-272 942.6 505 89.3
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 3.8e-269 931.0 505 89.1
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 2.5e-268 928.3 505 88.7
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 3.0e-266 921.4 505 87.3
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 6.7e-266 920.2 505 87.9
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 2.0e-265 918.7 503 86.9
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 5.7e-265 917.1 505 86.5
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 7.4e-265 916.8 504 87.5
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 9.7e-265 916.4 505 87.7
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 6.3e-264 913.7 505 87.1
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 8.2e-264 913.3 505 86.7
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 8.2e-264 913.3 505 86.1
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 1.1e-263 912.9 503 86.7
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 1.4e-263 912.5 505 85.9
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 2.4e-263 911.8 506 87.0
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 9.1e-263 909.8 506 86.6
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 2.0e-262 908.7 506 86.4
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 7.7e-262 906.7 505 85.3
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 1.0e-261 906.4 505 85.7
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 1.0e-261 906.4 505 85.7
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 1.0e-261 906.4 505 85.7
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 2.9e-261 904.8 505 85.5
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 6.5e-261 903.7 505 85.7
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 8.5e-261 903.3 505 84.8
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 1.5e-260 902.5 505 84.6
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 7.2e-260 900.2 505 85.7
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 9.4e-260 899.8 519 83.4
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 9.4e-260 899.8 505 85.1
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 2.7e-259 898.3 515 83.5
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 4.7e-259 897.5 505 84.4
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 1.4e-258 896.0 505 84.6
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 1.8e-258 895.6 505 84.8
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 3.0e-258 894.8 504 84.7
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 6.8e-258 893.6 505 83.4
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 8.8e-258 893.3 505 84.2
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 2.6e-257 891.7 503 84.1
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 9.8e-257 889.8 505 84.0
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 1.3e-256 889.4 505 83.0
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 3.7e-256 887.9 505 84.8
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 6.3e-256 887.1 505 83.6
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 4.1e-255 884.4 505 83.2
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 4.1e-255 884.4 505 83.6
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 4.1e-255 884.4 516 83.3
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 7.0e-255 883.6 505 84.0
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 1.0e-253 879.8 505 83.2
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 1.0e-253 879.8 505 83.2
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 1.3e-253 879.4 505 83.4
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 1.7e-253 879.0 505 82.4
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 2.2e-253 878.6 504 83.3
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 2.2e-253 878.6 505 82.8
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 3.8e-253 877.9 505 82.4
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 3.8e-253 877.9 503 82.5
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 3.8e-253 877.9 505 83.0
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 6.5e-253 877.1 538 78.6
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 1.1e-252 876.3 505 82.4
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 1.5e-252 875.9 505 82.2
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 1.9e-252 875.5 505 81.8
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 1.9e-252 875.5 505 82.8
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 1.9e-252 875.5 539 79.4
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 1.9e-252 875.5 504 82.5
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 1.9e-252 875.5 504 82.5
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 2.5e-252 875.2 503 84.3
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 3.2e-252 874.8 503 82.9
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 7.2e-252 873.6 504 83.3
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 2.1e-251 872.1 503 82.5
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 4.7e-251 870.9 505 82.0
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 4.7e-251 870.9 504 82.5
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 4.7e-251 870.9 497 83.9
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 6.1e-251 870.5 500 83.2
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 3.0e-250 868.2 502 82.7
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 5.2e-250 867.5 505 82.8
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 6.8e-250 867.1 503 81.9
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 8.8e-250 866.7 518 81.9
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 8.8e-250 866.7 503 80.9
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 1.5e-249 865.9 503 83.5
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 1.5e-249 865.9 503 81.1
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 3.4e-249 864.8 503 81.5
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 5.7e-249 864.0 518 81.9
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 1.3e-248 862.8 518 81.7
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 1.7e-248 862.4 506 81.0
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 2.2e-248 862.1 522 79.3
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 3.7e-248 861.3 505 81.0
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 8.3e-248 860.1 504 81.2
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 8.3e-248 860.1 500 81.6
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 2.4e-247 858.6 505 81.4
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 7.0e-247 857.1 503 81.1
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 1.6e-246 855.9 511 81.4
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 2.0e-246 855.5 506 82.0
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 5.9e-246 854.0 505 82.4
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 1.7e-245 852.4 503 79.3
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 5.0e-245 850.9 505 80.6
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 3.3e-244 848.2 508 79.9
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 3.3e-244 848.2 508 79.9
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 3.3e-244 848.2 503 80.7
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 7.2e-244 847.0 503 80.5
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 6.1e-243 844.0 505 80.6
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 6.1e-243 844.0 508 81.5
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 8.0e-243 843.6 509 81.5
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 1.0e-242 843.2 601 71.5
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 2.3e-242 842.0 503 80.1
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 3.0e-242 841.6 510 81.2
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 5.2e-242 840.9 505 80.2
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 2.6e-241 838.6 503 79.5
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 8.3e-240 833.6 505 80.4
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 8.3e-240 833.6 505 80.4
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 3.2e-239 831.6 532 77.8
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 1.1e-236 823.2 503 78.9
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 3.3e-236 821.6 503 78.5
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 1.8e-234 815.8 503 75.9
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 6.0e-230 800.8 503 77.5
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 7.8e-230 800.4 503 77.1
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 1.3e-229 799.7 503 77.3
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 2.3e-229 798.9 503 75.1
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 1.4e-194 683.3 500 64.8
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 3.5e-190 668.7 505 67.1
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 6.0e-190 667.9 500 64.0
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 1.3e-181 640.2 505 61.4
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 6.9e-178 627.9 339 88.5
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 1.9e-175 619.8 338 86.7
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.8e-173 613.2 389 76.3
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 1.1e-172 610.5 376 77.7
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 1.5e-172 610.1 505 63.8
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 5.9e-169 598.2 505 62.8
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 9.4e-167 590.9 357 81.0
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.7e-166 589.3 346 80.3
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 2.5e-164 582.8 337 81.6
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.4e-162 576.2 366 76.0
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 7.5e-140 501.5 377 68.7
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 1.3e-120 437.6 310 71.0
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 4.3e-119 432.6 294 67.7
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 5.6e-111 405.6 497 44.3
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 2.9e-107 393.3 302 66.2
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 1.9e-103 380.6 508 42.5
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 3.0e-96 356.7 202 82.2
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 1.2e-92 344.7 489 39.7
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 1.1e-90 338.2 295 55.3
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 1.1e-74 285.0 165 82.4
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 1.8e-72 277.7 464 40.1
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 9.6e-63 245.4 141 81.6
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 6.7e-56 222.6 332 44.6
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 9.4e-50 202.2 114 84.2
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 7.2e-42 176.0 104 81.7
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 2.4e-37 161.0 107 68.2
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 7.7e-36 156.0 107 73.8
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.8e-17 94.4 53 83.0
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 8.0e-17 92.8 42 100.0
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 2.7e-12 77.8 53 67.9
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.3e-11 75.5 53 77.4
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.9e-10 71.6 41 78.0
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 4.3e-10 70.5 54 61.1
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.6e-09 68.6 29 100.0
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 3.4e-07 60.8 47 63.8


User provided reference genes

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