Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2333 Trochodendron aralioides HOM05D002030 ORTHO05D004391 3.7e-182 641.3 313 100.0
Cfa010689 Carpinus fangiana HOM05D002030 ORTHO05D004391 1.0e-86 324.3 457 46.8
Actinidia15851 Actinidia chinensis HOM05D002030 ORTHO05D004391 1.3e-86 323.9 470 45.5
TAR633G1299 Trochodendron aralioides HOM05D002030 ORTHO05D004391 6.6e-86 321.6 473 46.7
Thecc.01G416600 Theobroma cacao HOM05D002030 ORTHO05D004391 1.1e-85 320.9 470 45.3
MELO3C023506.2 Cucumis melo HOM05D002030 ORTHO05D004391 4.3e-85 318.9 473 44.4
TWI09G1279 Tripterygium wilfordii HOM05D002030 ORTHO05D004391 4.3e-85 318.9 471 44.6
TAR623G1248 Trochodendron aralioides HOM05D002030 ORTHO05D004391 7.3e-85 318.2 473 46.5
CsaV3_7G031480 Cucumis sativus L. HOM05D002030 ORTHO05D004391 9.5e-85 317.8 472 44.9
Dinv43498 Davidia involucrata HOM05D002030 ORTHO05D004391 9.5e-85 317.8 470 45.5
Haze_03285 Corylus avellana HOM05D002030 ORTHO05D004391 1.6e-84 317.0 468 45.5
Cpa.g.sc189.5 Carica papaya HOM05D002030 ORTHO05D004391 2.1e-84 316.6 472 44.3
Gohir.D05G162800 Gossypium hirsutum HOM05D002030 ORTHO05D004391 3.6e-84 315.8 475 44.0
Manes.10G152000 Manihot esculenta HOM05D002030 ORTHO05D004391 3.6e-84 315.8 471 44.8
Rhsim07G0049800 Rhododendron simsii HOM05D002030 ORTHO05D004391 3.6e-84 315.8 473 44.4
ATR0006G067 Amborella trichopoda HOM05D002030 ORTHO05D004391 4.7e-84 315.5 471 44.6
Eucgr.G03412 Eucalyptus grandis HOM05D002030 ORTHO05D004391 8.0e-84 314.7 471 44.6
Gohir.A05G160100 Gossypium hirsutum HOM05D002030 ORTHO05D004391 8.0e-84 314.7 475 43.8
Gorai.009G167800 Gossypium raimondii HOM05D002030 ORTHO05D004391 1.0e-83 314.3 475 43.8
CANSAT11G1376 Cannabis sativa HOM05D002030 ORTHO05D004391 1.4e-83 313.9 471 44.6
Hma1.2p1_0505F.1_g168140 Hydrangea macrophylla HOM05D002030 ORTHO05D004391 1.4e-83 313.9 472 44.1
Sed0004903 Sechium edule HOM05D002030 ORTHO05D004391 1.4e-83 313.9 473 43.1
TWI73G0973 Tripterygium wilfordii HOM05D002030 ORTHO05D004391 1.4e-83 313.9 471 44.6
vmacro13609 Vaccinium macrocarpon HOM05D002030 ORTHO05D004391 2.3e-83 313.2 473 43.8
QL04p001335 Quercus lobata HOM05D002030 ORTHO05D004391 3.1e-83 312.8 469 45.6
CSS0004924 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D004391 4.0e-83 312.4 476 44.5
CSS0020062 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D004391 4.0e-83 312.4 476 44.5
Lsat_1_v5_gn_1_87220 Lactuca sativa HOM05D002030 ORTHO05D004391 4.0e-83 312.4 461 44.9
QL04p001534 Quercus lobata HOM05D002030 ORTHO05D004391 5.2e-83 312.0 471 45.0
MBI04_g33965_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D004391 8.9e-83 311.2 474 45.1
Hma1.2p1_0293F.1_g116260 Hydrangea macrophylla HOM05D002030 ORTHO05D004391 1.2e-82 310.8 471 43.1
GSVIVG01001358001 Vitis vinifera HOM05D002030 ORTHO05D004391 1.5e-82 310.5 471 44.4
CAN.G129.46 Capsicum annuum HOM05D002030 ORTHO05D004391 2.0e-82 310.1 471 43.5
COL.COLO4_26822 Corchorus olitorius HOM05D002030 ORTHO05D004391 2.0e-82 310.1 471 44.2
RcHm_v2.0_Chr1g0313271 Rosa chinensis HOM05D002030 ORTHO05D004391 2.0e-82 310.1 471 44.4
Aqoxy2G00078 Aquilegia oxysepala HOM05D002030 ORTHO05D004391 4.4e-82 308.9 471 44.6
MD00G1055300 Malus domestica HOM05D002030 ORTHO05D004391 5.8e-82 308.5 471 43.7
MD02G1319300 Malus domestica HOM05D002030 ORTHO05D004391 5.8e-82 308.5 473 44.4
Nitab4.5_0000468g0060 Nicotiana tabacum HOM05D002030 ORTHO05D004391 5.8e-82 308.5 472 43.4
PGR044G1446 Punica granatum HOM05D002030 ORTHO05D004391 5.8e-82 308.5 471 44.2
Duzib168G0303 Durio zibethinus HOM05D002030 ORTHO05D004391 7.5e-82 308.1 473 44.2
Solyc01g073740.4 Solanum lycopersicum HOM05D002030 ORTHO05D004391 7.5e-82 308.1 475 43.2
ECA248G2977 Erigeron canadensis HOM05D002030 ORTHO05D004391 9.8e-82 307.8 473 43.6
Sopen01g033350 Solanum pennellii HOM05D002030 ORTHO05D004391 9.8e-82 307.8 471 43.5
PGSC0003DMG400028982 Solanum tuberosum HOM05D002030 ORTHO05D004391 9.8e-82 307.8 471 43.5
MSTRG.4998 Avicennia marina HOM05D002030 ORTHO05D004391 1.3e-81 307.4 474 43.5
unitig_61.g26437 Utricularia gibba HOM05D002030 ORTHO05D004391 1.7e-81 307.0 460 43.7
Cc02_g26940 Coffea canephora HOM05D002030 ORTHO05D004391 2.2e-81 306.6 475 45.1
MSTRG.17066 Avicennia marina HOM05D002030 ORTHO05D004391 2.9e-81 306.2 473 43.6
CiPaw.16G066900 Carya illinoinensis HOM05D002030 ORTHO05D004391 4.9e-81 305.4 468 44.9
Prupe.2G002900 Prunus persica HOM05D002030 ORTHO05D004391 8.3e-81 304.7 472 44.1
PSO384G2681 Papaver somniferum HOM05D002030 ORTHO05D004391 1.1e-80 304.3 469 43.5
THA.LOC104817150 Tarenaya hassleriana HOM05D002030 ORTHO05D004391 1.1e-80 304.3 474 43.2
MBI01_g01369_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D004391 1.4e-80 303.9 472 43.2
Ciclev10031423m.g Citrus clementina HOM05D002030 ORTHO05D004391 2.4e-80 303.1 473 43.3
Aa31LG1G25930 Aethionema arabicum HOM05D002030 ORTHO05D004391 4.1e-80 302.4 472 42.6
Manes.07G000500 Manihot esculenta HOM05D002030 ORTHO05D004391 5.4e-80 302.0 473 43.6
PSO339G0144 Papaver somniferum HOM05D002030 ORTHO05D004391 5.4e-80 302.0 469 43.1
ECA234G1190 Erigeron canadensis HOM05D002030 ORTHO05D004391 2.7e-79 299.7 474 43.5
C03p29550 Brassica napus HOM05D002030 ORTHO05D004391 4.6e-79 298.9 471 42.5
Sed0005598 Sechium edule HOM05D002030 ORTHO05D004391 4.6e-79 298.9 473 42.9
BcaC01g05172 Brassica carinata HOM05D002030 ORTHO05D004391 6.0e-79 298.5 471 42.5
BolC3t15304H Brassica oleracea HOM05D002030 ORTHO05D004391 6.0e-79 298.5 471 42.5
BcaB01g03317 Brassica carinata HOM05D002030 ORTHO05D004391 7.8e-79 298.1 471 42.3
BcaB06g29369 Brassica carinata HOM05D002030 ORTHO05D004391 1.0e-78 297.7 472 42.6
C04p70970 Brassica napus HOM05D002030 ORTHO05D004391 1.0e-78 297.7 472 42.6
BolC4t28600H Brassica oleracea HOM05D002030 ORTHO05D004391 1.0e-78 297.7 472 42.6
Atru.chr11.2703 Acer truncatum HOM05D002030 ORTHO05D004391 1.7e-78 297.0 474 42.2
A04p33270 Brassica napus HOM05D002030 ORTHO05D004391 1.7e-78 297.0 471 42.0
BraA04t18788Z Brassica rapa HOM05D002030 ORTHO05D004391 1.7e-78 297.0 471 42.0
BraA03t11685Z Brassica rapa HOM05D002030 ORTHO05D004391 2.3e-78 296.6 471 42.5
Thhalv10001384m.g Eutrema salsugineum HOM05D002030 ORTHO05D004391 2.3e-78 296.6 472 41.9
A03p24780 Brassica napus HOM05D002030 ORTHO05D004391 3.9e-78 295.8 471 42.0
Sp4g26410 Schrenkiella parvula HOM05D002030 ORTHO05D004391 3.9e-78 295.8 472 41.7
Carub.0004s2693 Capsella rubella HOM05D002030 ORTHO05D004391 8.6e-78 294.7 472 42.4
EL10Ac4g10124 Beta vulgaris HOM05D002030 ORTHO05D004391 1.1e-77 294.3 473 42.3
EL10Ac4g10165 Beta vulgaris HOM05D002030 ORTHO05D004391 1.1e-77 294.3 473 42.3
Migut.O00475 Erythranthe guttata HOM05D002030 ORTHO05D004391 1.1e-77 294.3 447 42.7
Sp5g03110 Schrenkiella parvula HOM05D002030 ORTHO05D004391 1.1e-77 294.3 453 42.6
FAN01G0191 Fragaria x ananassa HOM05D002030 ORTHO05D004391 2.5e-77 293.1 471 42.7
HanXRQChr01g0018081 Helianthus annuus HOM05D002030 ORTHO05D004391 2.5e-77 293.1 460 43.3
Potri.001G230500 Populus trichocarpa HOM05D002030 ORTHO05D004391 2.5e-77 293.1 476 42.9
Os02g0194100 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D004391 3.3e-77 292.7 470 41.5
Peaxi162Scf00402g00612 Petunia axillaris HOM05D002030 ORTHO05D004391 4.3e-77 292.4 511 40.1
AL4G43330 Arabidopsis lyrata HOM05D002030 ORTHO05D004391 5.6e-77 292.0 472 41.5
SalBow5G3889 Salvia bowleyana HOM05D002030 ORTHO05D004391 5.6e-77 292.0 473 42.3
FAN10G1580 Fragaria x ananassa HOM05D002030 ORTHO05D004391 7.3e-77 291.6 471 42.7
FAN01G3098 Fragaria x ananassa HOM05D002030 ORTHO05D004391 9.5e-77 291.2 471 42.7
AUR62016372 Chenopodium quinoa HOM05D002030 ORTHO05D004391 1.6e-76 290.4 473 41.6
ClCG09G003730 Citrullus lanatus HOM05D002030 ORTHO05D004391 1.6e-76 290.4 456 43.2
Carub.0005s2683 Capsella rubella HOM05D002030 ORTHO05D004391 2.1e-76 290.0 471 41.8
FvH4_7g00080 Fragaria vesca HOM05D002030 ORTHO05D004391 2.1e-76 290.0 471 42.5
FAN06G4832 Fragaria x ananassa HOM05D002030 ORTHO05D004391 2.1e-76 290.0 471 42.5
Migut.N01657 Erythranthe guttata HOM05D002030 ORTHO05D004391 2.8e-76 289.7 473 41.4
Oeu032787.1 Olea europaea HOM05D002030 ORTHO05D004391 2.8e-76 289.7 509 41.7
AT2G44350 Arabidopsis thaliana HOM05D002030 ORTHO05D004391 8.0e-76 288.1 473 41.4
A04p01870 Brassica napus HOM05D002030 ORTHO05D004391 1.4e-75 287.3 468 41.5
C04p32630 Brassica napus HOM05D002030 ORTHO05D004391 1.4e-75 287.3 468 41.5
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 1.4e-75 287.3 473 41.6
FAN03G0965 Fragaria x ananassa HOM05D002030 ORTHO05D004391 2.3e-75 286.6 470 42.1
Zm00001eb206100 Zea mays HOM05D002030 ORTHO05D004391 3.1e-75 286.2 467 41.5
Os11g0538900 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D004391 4.0e-75 285.8 471 41.0
BcaB02g08193 Brassica carinata HOM05D002030 ORTHO05D004391 6.8e-75 285.0 468 41.0
BolC4t24830H Brassica oleracea HOM05D002030 ORTHO05D004391 6.8e-75 285.0 469 41.6
Zm00001eb236450 Zea mays HOM05D002030 ORTHO05D004391 6.8e-75 285.0 469 41.2
CARHR170410 Cardamine hirsuta HOM05D002030 ORTHO05D004391 8.9e-75 284.6 472 40.9
Aa31LG10G14260 Aethionema arabicum HOM05D002030 ORTHO05D004391 1.5e-74 283.9 468 42.5
BraA04t15910Z Brassica rapa HOM05D002030 ORTHO05D004391 2.6e-74 283.1 469 41.4
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 7.5e-74 281.6 485 40.6
DCAR_029593 Daucus carota HOM05D002030 ORTHO05D004391 7.5e-74 281.6 522 38.3
EL10Ac9g21933 Beta vulgaris HOM05D002030 ORTHO05D004391 2.9e-73 279.6 485 41.0
AT3G60100 Arabidopsis thaliana HOM05D002030 ORTHO05D004391 6.4e-73 278.5 461 41.6
SEGI_39166 Sequoiadendron giganteum HOM05D002030 ORTHO05D004391 1.4e-72 277.3 471 41.0
AL5G42300 Arabidopsis lyrata HOM05D002030 ORTHO05D004391 1.9e-72 276.9 468 41.0
Sabra16G0138000 Salix brachista HOM05D002030 ORTHO05D004391 9.2e-72 274.6 465 41.3
HPP92_022742 Vanilla planifolia HOM05D002030 ORTHO05D004391 9.2e-72 274.6 453 40.6
Nn2g15681 Nelumbo nucifera HOM05D002030 ORTHO05D004391 3.5e-71 272.7 399 45.4
Dinv43938 Davidia involucrata HOM05D002030 ORTHO05D004391 5.1e-70 268.9 371 47.2
Sc02g0003780 Simmondsia chinensis HOM05D002030 ORTHO05D004391 1.1e-69 267.7 401 43.6
SGA_v2.0_scaffold4G02232 Striga asiatica HOM05D002030 ORTHO05D004391 1.1e-69 267.7 364 47.3
CARHR139510 Cardamine hirsuta HOM05D002030 ORTHO05D004391 5.6e-69 265.4 401 43.1
CDE06G2277 Ceratophyllum demersum HOM05D002030 ORTHO05D004391 6.2e-68 261.9 421 41.1
Lsat_1_v5_gn_4_46541 Lactuca sativa HOM05D002030 ORTHO05D004391 8.1e-68 261.5 401 43.9
Phvul.005G041600 Phaseolus vulgaris HOM05D002030 ORTHO05D004391 1.8e-67 260.4 475 38.5
Glyma.08G157700 Glycine max HOM05D002030 ORTHO05D004391 3.1e-67 259.6 475 38.3
Oeu024931.4 Olea europaea HOM05D002030 ORTHO05D004391 3.1e-67 259.6 458 39.3
VMungo1080G0649 Vigna mungo HOM05D002030 ORTHO05D004391 4.0e-67 259.2 475 38.3
AUR62011552 Chenopodium quinoa HOM05D002030 ORTHO05D004391 6.8e-67 258.5 421 40.6
Ca_02885_v3 Cicer arietinum L. HOM05D002030 ORTHO05D004391 8.9e-67 258.1 465 38.7
Ca_02887_v3 Cicer arietinum L. HOM05D002030 ORTHO05D004391 8.9e-67 258.1 465 38.7
ATR0626G367 Amborella trichopoda HOM05D002030 ORTHO05D004391 1.5e-66 257.3 420 40.7
Oeu000987.1 Olea europaea HOM05D002030 ORTHO05D004391 2.0e-66 256.9 469 38.8
Medtr2g061630 Medicago truncatula HOM05D002030 ORTHO05D004391 4.4e-66 255.8 465 38.1
Zm00001eb206090 Zea mays HOM05D002030 ORTHO05D004391 5.8e-66 255.4 454 38.1
BcaC02g10111 Brassica carinata HOM05D002030 ORTHO05D004391 9.9e-66 254.6 416 40.9
Glyma.15G268500 Glycine max HOM05D002030 ORTHO05D004391 9.9e-66 254.6 475 37.9
Actinidia21583 Actinidia chinensis HOM05D002030 ORTHO05D004391 1.7e-65 253.8 456 41.4
arahy.Tifrunner.gnm1.ann1.PFQ45M Arachis hypogaea HOM05D002030 ORTHO05D004391 1.7e-65 253.8 472 37.9
Thhalv10005966m.g Eutrema salsugineum HOM05D002030 ORTHO05D004391 1.7e-65 253.8 418 40.4
arahy.Tifrunner.gnm1.ann1.X24NYN Arachis hypogaea HOM05D002030 ORTHO05D004391 2.2e-65 253.4 472 37.9
Lj3g0024225 Lotus japonicus HOM05D002030 ORTHO05D004391 8.3e-65 251.5 466 38.6
Lalb_Chr25g0283641 Lupinus albus HOM05D002030 ORTHO05D004391 8.3e-65 251.5 475 37.3
CDE07G1107 Ceratophyllum demersum HOM05D002030 ORTHO05D028682 1.4e-64 250.8 351 46.2
Psat1g127120 Pisum sativum HOM05D002030 ORTHO05D004391 7.1e-64 248.4 467 37.3
Lalb_Chr20g0108201 Lupinus albus HOM05D002030 ORTHO05D004391 1.9e-61 240.4 486 35.6
SGA_v2.0_scaffold95G28770 Striga asiatica HOM05D002030 ORTHO05D004391 5.6e-61 238.8 469 39.0
Pp3c1_40030 Physcomitrium patens HOM05D002030 ORTHO05D004391 2.1e-60 236.9 395 39.2
SMO118G0428 Selaginella moellendorffii HOM05D002030 ORTHO05D004391 2.1e-60 236.9 420 37.4
AagrBONN_evm.TU.Sc2ySwM_117.1175 Anthoceros agrestis HOM05D002030 ORTHO05D004391 1.5e-58 230.7 421 36.8
AagrBONN_evm.TU.Sc2ySwM_228.5639 Anthoceros agrestis HOM05D002030 ORTHO05D004391 3.4e-58 229.6 421 36.6
HanXRQChr16g0520361 Helianthus annuus HOM05D002030 ORTHO05D004391 3.4e-58 229.6 400 39.5
Pp3c13_21410 Physcomitrium patens HOM05D002030 ORTHO05D004391 4.9e-57 225.7 419 36.3
Mapoly0063s0010 Marchantia polymorpha HOM05D002030 ORTHO05D004391 1.4e-56 224.2 420 34.8
Mapoly0383s0001 Marchantia polymorpha HOM05D002030 ORTHO05D004391 1.4e-56 224.2 416 36.8
CSS0014563 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D004391 1.2e-55 221.1 377 41.6
Mapoly0200s0007 Marchantia polymorpha HOM05D002030 ORTHO05D004391 2.7e-55 219.9 416 35.1
Mapoly0216s0011 Marchantia polymorpha HOM05D002030 ORTHO05D004391 3.9e-54 216.1 419 33.9
Lj9A621G49 Lonicera japonica HOM05D002030 ORTHO05D004391 3.3e-53 213.0 383 39.7
Actinidia05844 Actinidia chinensis HOM05D002030 ORTHO05D026400 3.6e-52 209.5 135 80.7
TPR.G16151 Trifolium pratense HOM05D002030 ORTHO05D004391 4.0e-51 206.1 387 37.5
Cre12.g514750 Chlamydomonas reinhardtii HOM05D002030 ORTHO05D004391 7.6e-50 201.8 445 33.0
CBR_g11008 Chara braunii HOM05D002030 ORTHO05D004391 2.7e-47 193.4 432 31.7
Sed0002541 Sechium edule HOM05D002030 ORTHO05D026400 8.7e-46 188.3 146 70.5
MCO01G768 Micromonas commoda HOM05D002030 ORTHO05D004391 9.6e-45 184.9 421 32.5
PRCOL_00005650 Prasinoderma coloniale HOM05D002030 ORTHO05D004391 4.0e-43 179.5 414 31.4
Pp3c12_7330 Physcomitrium patens HOM05D002030 ORTHO05D004391 9.9e-42 174.9 276 38.8
Cfa026498 Carpinus fangiana HOM05D002030 ORTHO05D004391 3.2e-40 169.9 416 31.0
Haze_26913 Corylus avellana HOM05D002030 ORTHO05D004391 1.9e-37 160.6 402 31.3
ATR0626G287 Amborella trichopoda HOM05D002030 ORTHO05D026400 4.3e-37 159.5 83 92.8
Nitab4.5_0023974g0010 Nicotiana tabacum HOM05D002030 ORTHO05D004391 9.0e-35 151.8 134 59.7
Actinidia05845 Actinidia chinensis HOM05D002030 ORTHO05D004391 7.6e-34 148.7 135 57.8
Cfa027058 Carpinus fangiana HOM05D002030 ORTHO05D004391 1.1e-24 118.2 415 26.5
BraA09t42224Z Brassica rapa HOM05D002030 ORTHO05D026400 2.4e-19 100.5 75 68.0
unitig_0.g1368 Utricularia gibba HOM05D002030 ORTHO05D004391 5.3e-19 99.4 122 51.6
HPP92_022773 Vanilla planifolia HOM05D002030 ORTHO05D004391 2.6e-18 97.1 135 47.4
BcaC01g00821 Brassica carinata HOM05D002030 ORTHO05D004391 7.7e-18 95.5 83 57.8
Sabra09G0014900 Salix brachista HOM05D002030 ORTHO05D004391 6.1e-15 85.9 47 80.9
ATR0626G052 Amborella trichopoda HOM05D002030 ORTHO05D004391 6.7e-14 82.4 133 42.9
arahy.Tifrunner.gnm1.ann1.UNUC9P Arachis hypogaea HOM05D000200 ORTHO05D010534 2.8e-12 77.0 39 79.5
TPR.G8919 Trifolium pratense HOM05D002030 ORTHO05D004391 2.2e-09 67.4 90 45.6
TPR.G24648 Trifolium pratense HOM05D002030 ORTHO05D004391 1.9e-08 64.3 60 51.7
Potri.009G023900 Populus trichocarpa HOM05D002030 ORTHO05D028124 1.4e-06 58.2 48 58.3
Aa31LG8G15420 Aethionema arabicum HOM05D002030 ORTHO05D010534 1.8e-06 57.8 35 68.6
AT2G11270 Arabidopsis thaliana HOM05D002030 ORTHO05D004391 2.3e-06 57.4 33 78.8
Hma1.2p1_0281F.1_g113210 Hydrangea macrophylla HOM05D002030 ORTHO05D004391 5.1e-06 56.2 34 67.6


User provided reference genes

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