Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 1.6e-82 309.3 151 100.0
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 6.8e-81 303.9 151 97.4
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 8.9e-81 303.5 151 97.4
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 1.5e-80 302.8 151 96.7
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 1.5e-80 302.8 150 98.7
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 3.4e-80 301.6 151 96.0
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 3.4e-80 301.6 150 98.0
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 3.4e-80 301.6 150 98.0
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 4.4e-80 301.2 150 98.0
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 5.8e-80 300.8 150 97.3
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 9.9e-80 300.1 150 97.3
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 9.9e-80 300.1 150 97.3
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 9.9e-80 300.1 150 97.3
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 9.9e-80 300.1 150 97.3
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.7e-79 299.3 150 96.7
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 1.7e-79 299.3 150 96.7
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 2.2e-79 298.9 149 96.0
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 3.8e-79 298.1 148 97.3
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 3.8e-79 298.1 148 97.3
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 4.9e-79 297.7 154 94.2
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 6.4e-79 297.4 150 95.3
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 1.1e-78 296.6 151 94.0
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 1.1e-78 296.6 151 95.4
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 1.1e-78 296.6 151 95.4
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 1.4e-78 296.2 153 94.8
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.4e-78 296.2 148 96.6
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.4e-78 296.2 150 94.0
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.4e-78 296.2 150 94.0
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 1.9e-78 295.8 148 96.6
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 2.4e-78 295.4 149 94.6
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 4.1e-78 294.7 148 95.9
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 4.1e-78 294.7 148 95.9
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 4.1e-78 294.7 148 94.6
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 4.1e-78 294.7 152 95.4
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 5.4e-78 294.3 152 95.4
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 5.4e-78 294.3 151 94.7
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 5.4e-78 294.3 151 96.7
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 5.4e-78 294.3 148 95.3
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 7.1e-78 293.9 150 94.7
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 7.1e-78 293.9 148 95.9
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 7.1e-78 293.9 148 94.6
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 9.2e-78 293.5 154 91.6
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 9.2e-78 293.5 148 95.9
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 9.2e-78 293.5 148 95.9
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.2e-77 293.1 147 95.9
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.6e-77 292.7 148 93.2
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.6e-77 292.7 150 95.3
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 1.6e-77 292.7 148 95.3
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 1.6e-77 292.7 148 95.3
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 2.1e-77 292.4 149 94.0
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 2.1e-77 292.4 148 95.3
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 2.1e-77 292.4 148 95.3
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 2.1e-77 292.4 148 95.3
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 2.1e-77 292.4 148 95.3
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 2.1e-77 292.4 148 95.3
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 2.7e-77 292.0 150 93.3
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 2.7e-77 292.0 148 95.3
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 2.7e-77 292.0 147 94.6
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 3.5e-77 291.6 152 94.1
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 3.5e-77 291.6 148 95.3
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 4.6e-77 291.2 150 95.3
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 4.6e-77 291.2 148 94.6
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 6.0e-77 290.8 152 92.8
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 6.0e-77 290.8 145 95.9
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 6.0e-77 290.8 145 95.9
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 7.8e-77 290.4 148 94.6
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 7.8e-77 290.4 152 93.4
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.0e-76 290.0 150 95.3
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.3e-76 289.7 152 92.1
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.3e-76 289.7 152 92.1
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.3e-76 289.7 152 92.1
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.3e-76 289.7 152 92.1
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.3e-76 289.7 152 92.1
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.3e-76 289.7 147 93.9
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 1.3e-76 289.7 152 92.1
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.0e-76 288.5 152 91.4
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 3.0e-76 288.5 151 93.4
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 3.0e-76 288.5 149 90.6
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 5.1e-76 287.7 151 91.4
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 5.1e-76 287.7 148 93.2
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 8.6e-76 287.0 144 95.1
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 8.6e-76 287.0 144 95.8
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 1.1e-75 286.6 150 91.3
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 1.1e-75 286.6 151 92.1
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 1.1e-75 286.6 151 92.1
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 1.1e-75 286.6 148 91.9
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 1.1e-75 286.6 147 92.5
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 1.1e-75 286.6 147 92.5
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 1.1e-75 286.6 149 91.3
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 1.5e-75 286.2 152 91.4
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 1.5e-75 286.2 148 92.6
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.9e-75 285.8 148 91.9
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.9e-75 285.8 148 91.9
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 2.5e-75 285.4 151 90.7
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 3.3e-75 285.0 151 90.7
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 3.3e-75 285.0 151 91.4
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 5.6e-75 284.3 148 91.9
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 7.3e-75 283.9 150 92.0
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 1.2e-74 283.1 150 91.3
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 1.6e-74 282.7 148 92.6
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 1.6e-74 282.7 148 92.6
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 1.6e-74 282.7 147 91.8
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 4.7e-74 281.2 148 91.9
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 4.7e-74 281.2 148 91.9
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 2.4e-73 278.9 153 88.2
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 5.2e-73 277.7 154 89.0
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 1.2e-72 276.6 152 89.5
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 1.5e-72 276.2 147 90.5
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 1.5e-72 276.2 147 90.5
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 7.6e-72 273.9 156 87.2
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 1.7e-71 272.7 144 90.3
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.1e-70 270.0 140 92.9
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 1.4e-70 269.6 140 92.1
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 3.2e-70 268.5 131 98.5
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 5.4e-70 267.7 143 90.2
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 1.0e-68 263.5 138 91.3
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 5.1e-68 261.2 128 97.7
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 7.3e-67 257.3 131 93.9
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 9.6e-67 256.9 142 88.0
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 1.3e-66 256.5 133 93.2
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 1.3e-66 256.5 133 93.2
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 2.8e-66 255.4 153 82.4
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 2.8e-66 255.4 153 82.4
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 3.6e-66 255.0 132 93.9
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 4.8e-66 254.6 131 91.6
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 4.8e-66 254.6 129 93.8
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 6.2e-66 254.2 129 92.2
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 6.2e-66 254.2 129 92.2
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 6.2e-66 254.2 129 93.0
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.1e-65 253.4 145 86.9
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 1.1e-65 253.4 146 84.2
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 1.1e-65 253.4 132 91.7
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.4e-65 253.1 130 94.6
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 1.4e-65 253.1 129 93.0
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 3.1e-65 251.9 129 92.2
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 4.0e-65 251.5 129 91.5
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 4.0e-65 251.5 130 90.8
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 6.9e-65 250.8 130 92.3
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 9.0e-65 250.4 127 92.9
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 1.2e-64 250.0 131 91.6
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 2.6e-64 248.8 148 84.5
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 3.8e-63 245.0 141 84.4
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 1.0e-60 236.9 143 74.1
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 8.7e-60 233.8 144 72.9
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 2.1e-58 229.2 147 73.5
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 4.0e-57 224.9 153 74.5
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 1.2e-53 213.4 190 61.6
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.3e-52 209.1 145 73.8
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 6.7e-52 207.6 116 86.2
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 8.7e-52 207.2 126 79.4
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 2.4e-49 199.1 103 94.2
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 6.9e-49 197.6 103 93.2
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 6.9e-49 197.6 103 92.2
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 1.1e-46 190.3 116 75.9
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.1e-43 180.3 87 97.7
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 6.3e-42 174.5 115 81.7
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 2.0e-40 169.5 82 95.1
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 2.1e-37 159.5 83 88.0
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 2.7e-37 159.1 81 95.1
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.3e-36 156.8 146 59.6
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.1e-33 147.1 73 98.6
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 5.0e-31 138.3 74 87.8
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 7.9e-29 131.0 71 91.5
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 6.7e-28 127.9 71 90.1
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 3.3e-27 125.6 71 88.7
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 6.3e-26 121.3 77 76.6
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 1.6e-16 90.1 45 97.8
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 1.7e-15 86.7 46 91.3
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 2.3e-12 76.3 74 54.1


User provided reference genes

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