Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 6.3e-232 807.0 380 100.0
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 4.2e-143 511.9 380 65.8
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 4.0e-138 495.4 380 62.6
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 8.4e-136 487.6 382 62.6
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 8.1e-131 471.1 378 60.3
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 5.3e-130 468.4 380 61.3
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 7.6e-129 464.5 365 60.0
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 2.9e-128 462.6 381 57.7
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 3.9e-125 452.2 378 57.1
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 2.8e-123 446.0 380 57.6
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 1.8e-122 443.4 378 57.1
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 4.0e-122 442.2 378 57.1
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 1.7e-120 436.8 378 56.1
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 2.9e-120 436.0 377 57.6
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.7e-118 429.5 377 56.0
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 3.5e-118 429.1 377 57.3
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 6.0e-118 428.3 380 54.2
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 2.8e-115 419.5 382 54.7
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 1.1e-114 417.5 382 54.5
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 1.1e-114 417.5 382 53.9
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 2.4e-114 416.4 378 55.0
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 3.1e-114 416.0 379 54.9
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 2.0e-113 413.3 377 54.6
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 7.7e-113 411.4 378 55.3
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 3.8e-112 409.1 401 51.9
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 6.5e-112 408.3 379 54.1
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 3.2e-111 406.0 377 52.8
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 1.2e-110 404.1 382 50.5
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 1.2e-110 404.1 380 52.9
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 1.6e-110 403.7 377 52.3
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 4.6e-110 402.1 379 50.4
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 6.1e-110 401.7 376 53.2
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 6.1e-110 401.7 375 53.9
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 6.1e-110 401.7 375 53.9
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 2.3e-109 399.8 382 52.1
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 8.8e-109 397.9 380 52.1
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 5.7e-108 395.2 380 51.1
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 9.7e-108 394.4 381 53.0
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 1.8e-106 390.2 379 50.1
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 5.9e-105 385.2 365 53.2
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 1.0e-104 384.4 379 49.6
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 1.0e-104 384.4 380 50.8
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 1.4e-103 380.6 380 50.0
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 4.2e-103 379.0 381 49.3
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.6e-100 369.8 376 51.6
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 5.7e-100 368.6 375 50.9
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 7.4e-100 368.2 381 48.8
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 2.2e-99 366.7 378 49.2
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 2.2e-99 366.7 387 49.6
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 2.4e-98 363.2 381 49.6
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 7.0e-98 361.7 381 48.8
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 1.2e-97 360.9 378 48.9
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 2.6e-97 359.8 378 47.6
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 6.5e-96 355.1 378 46.8
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 3.2e-95 352.8 436 45.2
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 2.3e-93 346.7 380 48.7
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 5.7e-92 342.0 305 55.4
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 7.4e-92 341.7 387 47.8
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 2.8e-91 339.7 397 45.6
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.1e-90 337.8 397 45.8
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 5.3e-90 335.5 380 46.6
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 4.5e-89 332.4 370 47.3
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 5.9e-89 332.0 308 54.2
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 1.0e-88 331.3 378 48.9
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 1.7e-88 330.5 378 48.9
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 6.5e-88 328.6 381 46.2
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 6.5e-88 328.6 268 58.6
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 1.9e-87 327.0 382 46.9
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 6.1e-86 322.0 384 45.3
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 6.1e-86 322.0 309 53.7
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 8.0e-86 321.6 487 38.8
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 2.3e-85 320.1 386 45.6
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 2.3e-85 320.1 379 46.7
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 1.2e-84 317.8 379 44.9
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 7.5e-84 315.1 334 47.9
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 8.2e-83 311.6 381 43.8
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.4e-82 310.1 384 43.2
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 3.1e-82 309.7 358 46.4
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 4.1e-82 309.3 384 43.2
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 5.3e-82 308.9 380 44.2
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 9.1e-82 308.1 380 43.9
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 9.1e-82 308.1 307 50.5
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.6e-81 307.4 380 43.9
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.6e-81 307.4 382 44.5
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.5e-81 306.2 384 43.0
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 3.5e-81 306.2 390 43.6
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 5.9e-81 305.4 382 44.0
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 7.7e-81 305.1 382 43.2
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 1.3e-80 304.3 375 43.5
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.9e-80 303.1 384 43.0
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 5.0e-80 302.4 385 42.6
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 2.5e-79 300.1 301 53.5
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 1.2e-78 297.7 379 42.0
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 1.6e-78 297.4 387 44.2
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 2.7e-78 296.6 401 41.1
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.6e-78 296.2 385 41.8
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 2.0e-76 290.4 356 43.8
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 4.4e-76 289.3 375 42.9
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 3.7e-75 286.2 338 45.0
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 4.8e-75 285.8 382 40.3
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 4.8e-75 285.8 376 42.6
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 6.3e-75 285.4 379 41.7
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 6.3e-75 285.4 375 42.4
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 1.5e-71 274.2 264 52.7
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 4.2e-71 272.7 368 42.9
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.2e-70 271.2 389 40.6
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 3.6e-70 269.6 367 40.6
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 4.7e-70 269.2 376 41.0
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 5.7e-68 262.3 373 39.7
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.3e-67 261.2 361 39.9
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 2.2e-67 260.4 376 39.9
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.2e-67 260.4 393 37.7
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.2e-67 260.4 393 37.7
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 8.3e-67 258.5 373 39.7
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 1.1e-66 258.1 376 39.1
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 1.4e-66 257.7 389 37.3
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 2.4e-66 256.9 360 39.7
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 2.4e-66 256.9 373 38.9
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 3.1e-66 256.5 382 40.1
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 4.1e-66 256.1 380 41.3
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 2.0e-65 253.8 383 39.7
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 5.9e-65 252.3 382 39.5
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 7.8e-65 251.9 360 38.3
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.7e-64 250.8 311 43.7
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 3.3e-63 246.5 394 36.5
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 8.0e-62 241.9 221 54.8
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 2.3e-61 240.4 373 36.7
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 5.2e-61 239.2 387 39.8
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 3.4e-60 236.5 384 39.3
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 9.8e-60 235.0 389 37.3
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 2.2e-59 233.8 384 37.5
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 8.3e-59 231.9 384 38.0
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 8.3e-59 231.9 384 38.0
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 1.6e-57 227.6 193 56.5
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.0e-57 227.3 306 43.5
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 3.5e-57 226.5 292 42.1
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 3.0e-56 223.4 377 38.2
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 4.3e-55 219.5 399 36.1
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 4.3e-55 219.5 379 36.7
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 1.6e-54 217.6 236 47.0
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 2.1e-54 217.2 393 36.6
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 7.3e-47 192.2 291 39.2
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.8e-46 190.3 239 42.3
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 4.0e-45 186.4 141 63.8
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 3.7e-43 179.9 205 48.3
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 4.1e-42 176.4 200 43.5
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 1.0e-40 171.8 360 32.5
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 6.6e-40 169.1 164 51.8
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 8.7e-32 142.1 260 35.4
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 5.3e-21 106.3 350 26.0
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 2.6e-20 104.0 155 36.8
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 6.4e-19 99.4 212 30.2
MCO05G023 Micromonas commoda HOM05D004162 ORTHO05D004543 2.1e-17 94.4 438 26.9
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 7.4e-15 85.9 113 44.2
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 3.1e-13 80.5 63 57.1
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 1.0e-11 75.5 104 46.2
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 2.9e-11 73.9 65 56.9
VMungo0464G1157 Vigna mungo HOM05D004162 ORTHO05D004543 8.4e-11 72.4 100 43.0
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 7.1e-10 69.3 95 40.0
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 2.1e-09 67.8 62 56.5
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 1.1e-07 62.0 109 38.5
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 7.4e-07 59.3 65 43.1


User provided reference genes

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