Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 2.3e-84 315.5 154 100.0
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 1.4e-68 263.1 154 79.2
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 2.0e-59 232.6 155 70.3
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 2.9e-58 228.8 154 68.2
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.7e-55 219.5 154 64.9
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 1.9e-54 216.1 153 64.7
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.9e-54 216.1 148 69.6
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 7.3e-54 214.2 154 64.3
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 9.5e-54 213.8 154 64.9
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 2.1e-53 212.6 131 81.7
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 2.8e-53 212.2 154 65.6
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 4.7e-53 211.5 154 60.4
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 4.7e-53 211.5 154 63.0
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 6.1e-53 211.1 154 63.0
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 1.4e-52 209.9 154 64.3
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 1.4e-52 209.9 153 63.4
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 1.8e-52 209.5 154 59.7
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 3.1e-52 208.8 154 64.3
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 3.4e-51 205.3 154 59.1
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 4.4e-51 204.9 154 58.4
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 5.8e-51 204.5 154 60.4
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 7.5e-51 204.1 154 59.1
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 2.2e-50 202.6 154 61.7
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.9e-50 202.2 154 57.8
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 3.7e-50 201.8 154 61.0
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 4.9e-50 201.4 154 58.4
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 8.3e-50 200.7 154 61.7
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 8.3e-50 200.7 154 61.7
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.9e-49 199.5 155 61.9
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 2.4e-49 199.1 154 60.4
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 2.4e-49 199.1 154 61.0
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 4.1e-49 198.4 154 59.1
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 5.4e-49 198.0 153 60.8
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 7.0e-49 197.6 151 60.9
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 9.2e-49 197.2 154 59.7
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 1.6e-48 196.4 154 58.4
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 1.6e-48 196.4 153 64.1
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.6e-48 196.4 154 59.7
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 2.0e-48 196.1 154 59.7
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 6.0e-48 194.5 154 59.7
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 1.0e-47 193.7 150 60.7
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 1.7e-47 193.0 154 61.7
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 2.3e-47 192.6 154 59.1
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 3.9e-47 191.8 154 59.7
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 5.0e-47 191.4 154 58.4
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 6.6e-47 191.0 154 57.8
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.1e-46 190.3 154 57.1
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 1.5e-46 189.9 154 59.1
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 3.3e-46 188.7 152 57.9
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 3.3e-46 188.7 153 60.1
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 4.3e-46 188.3 153 60.1
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 7.3e-46 187.6 154 57.1
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 7.3e-46 187.6 147 59.2
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 9.5e-46 187.2 154 57.1
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 9.5e-46 187.2 154 57.1
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.6e-45 186.4 152 57.2
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 8.1e-45 184.1 152 55.9
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 8.1e-45 184.1 152 55.9
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 8.1e-45 184.1 154 58.4
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 1.1e-44 183.7 152 59.2
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 1.1e-44 183.7 152 59.2
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 1.8e-44 183.0 154 54.5
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.8e-44 183.0 154 51.9
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 8.9e-44 180.6 154 53.9
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 8.9e-44 180.6 156 57.1
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.5e-43 179.9 154 53.9
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.0e-43 179.5 152 57.9
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.6e-43 179.1 154 53.2
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.4e-43 178.7 154 53.2
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.4e-43 178.7 154 53.2
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 4.4e-43 178.3 154 54.5
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 5.8e-43 177.9 155 54.8
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 5.8e-43 177.9 154 53.2
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 7.5e-43 177.6 152 55.3
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 1.3e-42 176.8 152 57.9
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.2e-42 176.0 166 51.8
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 3.7e-42 175.3 147 55.8
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 2.4e-41 172.6 152 50.0
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 2.4e-41 172.6 154 50.6
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 2.4e-41 172.6 154 50.6
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 7.1e-41 171.0 155 52.9
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.2e-40 170.2 148 54.1
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 1.2e-40 170.2 154 51.3
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 1.6e-40 169.9 154 53.2
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 2.1e-40 169.5 154 53.2
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 3.5e-40 168.7 147 55.1
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 1.7e-39 166.4 153 50.3
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 3.9e-39 165.2 155 53.5
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 5.1e-39 164.9 154 51.3
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 5.1e-39 164.9 151 52.3
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.1e-38 163.7 155 51.0
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 1.1e-38 163.7 154 51.3
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 4.3e-38 161.8 156 51.3
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 7.3e-38 161.0 155 51.6
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 9.5e-38 160.6 157 51.0
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.2e-37 160.2 155 51.0
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 1.6e-37 159.8 154 49.4
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.4e-36 156.8 145 53.1
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.8e-36 156.4 156 48.7
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 2.3e-36 156.0 154 49.4
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 2.3e-36 156.0 158 49.4
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 3.1e-36 155.6 125 60.0
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 4.0e-36 155.2 156 47.4
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 6.8e-36 154.5 154 49.4
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 8.9e-36 154.1 122 59.8
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.2e-35 153.7 154 47.4
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.2e-35 153.7 154 48.7
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 1.2e-35 153.7 154 47.4
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 2.6e-35 152.5 155 47.1
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 2.6e-35 152.5 155 49.0
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 2.6e-35 152.5 156 44.9
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 2.6e-35 152.5 152 50.0
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 7.6e-35 151.0 156 46.2
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 7.6e-35 151.0 156 46.2
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 7.6e-35 151.0 156 46.2
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 7.6e-35 151.0 156 46.2
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 7.6e-35 151.0 156 46.2
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 7.6e-35 151.0 154 44.8
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 1.7e-34 149.8 154 46.8
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 4.9e-34 148.3 151 48.3
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 4.9e-34 148.3 154 46.8
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.1e-33 147.1 156 46.2
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 1.1e-33 147.1 160 46.9
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 1.4e-33 146.7 156 48.1
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 4.1e-33 145.2 156 44.9
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 5.4e-33 144.8 117 59.8
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 5.4e-33 144.8 154 46.1
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 7.1e-33 144.4 156 45.5
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 1.2e-32 143.7 156 44.9
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 3.5e-32 142.1 156 45.5
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 3.5e-32 142.1 154 47.4
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 7.8e-32 141.0 154 41.6
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 7.8e-32 141.0 154 44.8
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.3e-31 140.2 154 44.2
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 3.9e-31 138.7 156 45.5
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 6.6e-31 137.9 154 42.2
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 6.6e-31 137.9 156 46.2
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 8.6e-31 137.5 125 57.6
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 1.1e-30 137.1 153 44.4
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.1e-30 137.1 125 56.8
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 3.3e-30 135.6 157 45.9
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 3.3e-30 135.6 157 45.9
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 3.3e-30 135.6 153 45.8
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 4.3e-30 135.2 154 40.9
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 8.1e-29 131.0 151 41.1
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 1.8e-28 129.8 151 41.7
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 3.1e-28 129.0 88 68.2
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 4.0e-28 128.6 149 43.0
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 6.8e-28 127.9 156 41.7
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 5.8e-27 124.8 106 53.8
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 5.8e-27 124.8 139 45.3
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 3.2e-25 119.0 154 40.3
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 3.2e-25 119.0 149 43.6
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 2.7e-24 115.9 78 64.1
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 3.5e-24 115.5 94 56.4
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 1.3e-23 113.6 171 35.7
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 8.7e-23 110.9 91 54.9
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 1.9e-22 109.8 151 36.4
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.6e-21 106.7 131 42.0
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 2.1e-21 106.3 139 41.0
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 4.8e-21 105.1 104 46.2
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 2.0e-19 99.8 85 51.8
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.3e-18 97.1 92 48.9
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 6.4e-18 94.7 110 47.3
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 1.4e-17 93.6 80 57.5
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 1.1e-14 84.0 101 42.6
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 1.5e-14 83.6 99 43.4
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 9.6e-14 80.9 122 35.2
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 3.6e-13 79.0 105 45.7
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 1.4e-12 77.0 80 45.0
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 4.9e-10 68.6 66 50.0
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 8.4e-10 67.8 71 38.0
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 5.5e-09 65.1 38 71.1
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 1.2e-08 63.9 93 33.3
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.1e-08 63.2 64 42.2
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 7.9e-08 61.2 54 50.0
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 2.5e-06 56.2 40 60.0


User provided reference genes

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