Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 2.4e-146 522.3 302 100.0
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 6.5e-107 391.3 301 71.4
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 2.1e-105 386.3 302 67.9
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 9.1e-101 370.9 302 67.5
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 2.6e-100 369.4 302 67.5
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 5.5e-98 361.7 303 69.3
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 2.1e-97 359.8 302 64.6
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 1.2e-95 354.0 303 65.3
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 1.5e-95 353.6 303 68.6
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 3.7e-94 349.0 304 64.1
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 7.0e-93 344.7 294 68.4
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 7.0e-93 344.7 294 68.4
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 9.1e-93 344.4 293 68.6
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 1.2e-92 344.0 298 62.4
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 2.2e-91 339.7 304 69.1
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 2.2e-91 339.7 292 64.7
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 3.2e-90 335.9 304 63.8
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 5.5e-90 335.1 302 64.6
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 3.6e-89 332.4 300 63.0
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 2.3e-88 329.7 311 61.1
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 9.8e-87 324.3 302 62.3
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.3e-86 323.9 288 63.2
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 2.8e-86 322.8 301 62.1
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 6.3e-86 321.6 308 61.0
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.8e-85 320.1 288 63.2
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 3.1e-85 319.3 290 61.7
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 4.1e-85 318.9 302 64.6
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 2.0e-84 316.6 318 60.1
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 3.5e-84 315.8 303 59.7
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 4.5e-84 315.5 303 65.0
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 7.7e-84 314.7 305 60.7
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 7.7e-84 314.7 302 57.6
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 1.0e-83 314.3 305 60.0
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 6.6e-83 311.6 304 58.9
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 8.6e-83 311.2 303 60.4
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 1.5e-82 310.5 291 64.3
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 3.3e-82 309.3 278 61.9
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 3.3e-82 309.3 302 60.9
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 3.3e-82 309.3 298 60.7
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 5.6e-82 308.5 307 58.3
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 4.7e-81 305.4 301 57.8
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 6.1e-81 305.1 293 59.7
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 4.0e-80 302.4 302 58.9
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 5.2e-80 302.0 298 64.1
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 6.8e-80 301.6 263 66.5
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.2e-79 300.8 311 58.5
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.6e-79 299.7 305 58.4
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 2.6e-79 299.7 289 58.8
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 5.7e-79 298.5 288 58.7
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 7.5e-79 298.1 305 58.4
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 6.4e-78 295.0 298 58.1
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 6.4e-78 295.0 289 59.5
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 8.3e-78 294.7 295 59.7
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 1.1e-77 294.3 263 63.9
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.8e-77 293.5 302 57.0
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 1.8e-77 293.5 293 58.0
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 2.4e-77 293.1 304 56.6
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 5.4e-77 292.0 302 57.0
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.0e-76 290.0 255 63.5
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 2.7e-76 289.7 294 56.8
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.5e-76 289.3 290 58.6
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.0e-75 287.7 290 58.3
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.0e-75 287.7 290 58.3
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 1.3e-75 287.3 294 55.8
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 1.7e-75 287.0 284 58.1
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 1.7e-75 287.0 283 59.0
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 3.9e-75 285.8 291 59.5
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 8.6e-75 284.6 283 58.3
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 8.6e-75 284.6 284 58.5
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 1.1e-74 284.3 291 58.4
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 1.1e-74 284.3 311 55.0
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 1.9e-74 283.5 247 65.2
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.9e-74 283.5 290 57.2
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 3.3e-74 282.7 283 58.0
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 9.5e-74 281.2 299 55.5
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.2e-73 280.8 297 57.2
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 1.2e-73 280.8 288 56.9
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 2.8e-73 279.6 309 52.4
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 4.7e-73 278.9 286 57.0
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 1.4e-72 277.3 299 55.2
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.4e-72 277.3 295 56.9
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.8e-72 276.9 279 56.6
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 2.3e-72 276.6 262 59.5
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 4.0e-72 275.8 262 64.5
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 5.2e-72 275.4 300 55.0
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 5.2e-72 275.4 291 57.0
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 6.8e-72 275.0 300 56.0
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 1.2e-71 274.2 301 55.8
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 2.0e-71 273.5 262 59.9
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 5.8e-71 271.9 262 59.5
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 9.8e-71 271.2 298 57.0
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 2.9e-70 269.6 302 56.6
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 2.9e-70 269.6 291 52.6
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 8.3e-70 268.1 307 52.1
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 8.3e-70 268.1 310 51.3
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.1e-69 267.7 304 55.6
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.1e-69 267.7 310 52.6
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.1e-69 267.7 283 57.6
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 1.9e-69 266.9 301 52.5
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 4.1e-69 265.8 302 54.0
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 5.4e-69 265.4 308 55.5
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 5.4e-69 265.4 239 64.9
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 9.2e-69 264.6 301 55.1
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 1.6e-68 263.8 260 58.5
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 2.0e-68 263.5 300 52.7
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 2.7e-68 263.1 300 52.7
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 2.7e-68 263.1 300 52.7
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 2.7e-68 263.1 300 52.7
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 2.7e-68 263.1 264 58.3
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 7.8e-68 261.5 266 56.0
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 1.7e-67 260.4 268 58.2
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 6.6e-67 258.5 268 57.8
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 6.6e-67 258.5 305 54.8
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 9.5e-66 254.6 268 57.5
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 3.6e-65 252.7 306 54.9
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 8.1e-65 251.5 292 55.1
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 2.3e-64 250.0 294 51.7
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 1.2e-63 247.7 283 60.1
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 2.0e-63 246.9 285 54.7
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 4.6e-60 235.7 296 53.4
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 1.7e-59 233.8 306 50.0
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 5.1e-59 232.3 295 51.9
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 1.9e-58 230.3 278 54.0
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 7.3e-58 228.4 300 49.0
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.6e-57 227.3 234 54.7
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 2.8e-57 226.5 300 48.7
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 2.8e-57 226.5 293 48.8
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 3.6e-57 226.1 258 57.4
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 1.5e-55 220.7 302 48.7
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 4.4e-55 219.2 246 54.5
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.7e-51 207.2 210 55.7
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 3.0e-51 206.5 277 49.5
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 5.1e-51 205.7 147 72.1
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 1.1e-50 204.5 247 49.0
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 1.5e-50 204.1 266 48.1
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 5.6e-50 202.2 282 47.5
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 1.2e-49 201.1 212 57.1
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 4.0e-48 196.1 155 69.0
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 2.6e-47 193.4 263 46.4
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 4.9e-46 189.1 171 69.6
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 4.9e-46 189.1 171 69.6
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 1.2e-44 184.5 301 46.2
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 3.5e-44 183.0 255 45.9
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 6.6e-43 178.7 168 63.1
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 1.5e-42 177.6 273 45.8
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 7.3e-42 175.3 149 57.7
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 1.6e-41 174.1 280 42.5
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 2.1e-41 173.7 284 40.1
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 4.8e-41 172.6 162 58.0
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 6.9e-40 168.7 200 54.0
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 6.9e-40 168.7 134 62.7
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 2.0e-39 167.2 311 39.2
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 3.8e-38 162.9 155 56.8
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 1.4e-37 161.0 288 39.2
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 1.1e-34 151.4 288 36.8
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 1.5e-34 151.0 253 38.3
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 2.5e-34 150.2 187 54.0
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 2.5e-34 150.2 140 57.9
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 2.1e-33 147.1 254 48.0
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 6.9e-32 142.1 156 57.1
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 4.9e-30 136.0 188 48.4
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 1.4e-29 134.4 269 36.8
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 5.6e-26 122.5 122 56.6
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 1.6e-25 120.9 211 37.9
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 5.3e-24 115.9 99 62.6
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 5.3e-24 115.9 287 35.9
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.8e-22 109.8 150 50.0
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 4.6e-20 102.8 70 74.3
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 6.0e-20 102.4 201 38.3
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 9.6e-18 95.1 93 59.1
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 9.6e-18 95.1 92 60.9
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 8.2e-17 92.0 88 62.5
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 9.0e-16 88.6 103 52.4
CDE08G0595 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.2e-15 88.2 112 50.9
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 3.2e-13 80.1 48 83.3
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 1.3e-09 68.2 64 54.7
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.3e-09 68.2 276 26.4
Prupe.2G115400 Prunus persica HOM05D003921 ORTHO05D004394 2.4e-08 63.9 65 60.0
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 1.3e-06 58.2 282 27.3


User provided reference genes

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