Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1840 Trochodendron aralioides HOM05D005750 ORTHO05D007126 7.5e-178 627.1 322 100.0
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 1.7e-60 237.3 206 63.6
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 3.3e-48 196.4 234 49.6
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 7.3e-48 195.3 234 49.1
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.6e-47 194.1 231 49.8
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 1.6e-47 194.1 231 49.8
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 1.4e-46 191.0 228 49.6
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 2.3e-46 190.3 178 57.9
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 4.0e-46 189.5 233 48.1
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 1.2e-45 188.0 215 51.2
Dinv35517 Davidia involucrata HOM05D005750 ORTHO05D007126 5.8e-45 185.7 188 54.8
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 5.8e-45 185.7 221 49.8
COL.COLO4_14617 Corchorus olitorius HOM05D005750 ORTHO05D007126 2.2e-44 183.7 190 54.7
MD12G1159400 Malus domestica HOM05D005750 ORTHO05D007126 2.2e-44 183.7 203 52.7
Ca_23809_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 3.8e-44 183.0 191 55.0
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 3.8e-44 183.0 195 53.3
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 6.4e-44 182.2 224 47.8
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 8.4e-44 181.8 228 48.2
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 1.1e-43 181.4 233 47.2
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 1.1e-43 181.4 232 47.4
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 1.1e-43 181.4 195 52.8
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 1.4e-43 181.0 209 50.7
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 1.9e-43 180.6 228 47.8
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 1.9e-43 180.6 216 50.0
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 1.9e-43 180.6 209 51.2
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 2.4e-43 180.3 229 49.3
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 3.2e-43 179.9 228 48.2
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 4.1e-43 179.5 234 46.6
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 4.1e-43 179.5 202 52.0
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 4.1e-43 179.5 229 47.2
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 7.1e-43 178.7 201 52.2
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 7.1e-43 178.7 193 53.9
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 9.2e-43 178.3 185 54.6
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 2.1e-42 177.2 183 54.6
Actinidia29137 Actinidia chinensis HOM05D005750 ORTHO05D007126 2.7e-42 176.8 231 47.6
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 4.6e-42 176.0 231 46.3
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 6.0e-42 175.6 216 49.1
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 7.8e-42 175.3 173 56.1
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 7.8e-42 175.3 233 45.5
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 7.8e-42 175.3 168 57.1
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 7.8e-42 175.3 175 55.4
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 1.0e-41 174.9 232 45.7
PGSC0003DMG400019130 Solanum tuberosum HOM05D005750 ORTHO05D007126 1.3e-41 174.5 189 53.4
Oeu004613.2 Olea europaea HOM05D005750 ORTHO05D007126 1.7e-41 174.1 187 52.9
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 1.7e-41 174.1 200 51.0
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 1.7e-41 174.1 189 52.4
Nitab4.5_0000119g0240 Nicotiana tabacum HOM05D005750 ORTHO05D007126 2.3e-41 173.7 237 45.6
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 2.3e-41 173.7 227 45.8
Nn2g13588 Nelumbo nucifera HOM05D005750 ORTHO05D007126 3.9e-41 172.9 184 55.4
QL07p036167 Quercus lobata HOM05D005750 ORTHO05D007126 3.9e-41 172.9 180 54.4
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 5.1e-41 172.6 222 46.8
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 6.6e-41 172.2 217 47.9
Aqoxy1G00732 Aquilegia oxysepala HOM05D005750 ORTHO05D007126 6.6e-41 172.2 179 53.1
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 6.6e-41 172.2 188 52.1
TWI53G0977 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 6.6e-41 172.2 184 53.3
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 1.9e-40 170.6 221 48.0
Gorai.012G111300 Gossypium raimondii HOM05D005750 ORTHO05D007126 7.3e-40 168.7 184 52.7
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 9.6e-40 168.3 176 53.4
Haze_20940 Corylus avellana HOM05D005750 ORTHO05D007126 9.6e-40 168.3 174 54.0
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 1.2e-39 167.9 191 51.8
Aa31sc171G20 Aethionema arabicum HOM05D005750 ORTHO05D007126 1.6e-39 167.5 234 43.2
PSO384G4196 Papaver somniferum HOM05D005750 ORTHO05D007126 1.6e-39 167.5 225 46.7
Sc01g0006740 Simmondsia chinensis HOM05D005750 ORTHO05D007126 2.1e-39 167.2 218 45.0
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 2.8e-39 166.8 226 46.5
PGR031G0365 Punica granatum HOM05D005750 ORTHO05D007126 2.8e-39 166.8 166 54.2
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 3.6e-39 166.4 226 43.4
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 3.6e-39 166.4 186 51.1
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 6.2e-39 165.6 228 44.7
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 6.2e-39 165.6 188 47.9
Gohir.D04G128250 Gossypium hirsutum HOM05D005750 ORTHO05D007126 6.2e-39 165.6 184 52.2
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 8.1e-39 165.2 224 45.1
Solyc10g086770.3 Solanum lycopersicum HOM05D005750 ORTHO05D007126 8.1e-39 165.2 189 51.3
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 1.4e-38 164.5 164 55.5
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 1.8e-38 164.1 221 45.7
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 1.8e-38 164.1 191 51.8
PSO339G6575 Papaver somniferum HOM05D005750 ORTHO05D007126 4.0e-38 162.9 225 45.8
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 5.2e-38 162.5 155 56.8
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 6.9e-38 162.2 228 45.6
ECA236G1744 Erigeron canadensis HOM05D005750 ORTHO05D007126 1.2e-37 161.4 172 51.7
Lsat_1_v5_gn_8_99481 Lactuca sativa HOM05D005750 ORTHO05D007126 1.5e-37 161.0 169 52.1
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 2.0e-37 160.6 145 59.3
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 2.0e-37 160.6 145 59.3
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 2.0e-37 160.6 145 59.3
C04p38380 Brassica napus HOM05D005750 ORTHO05D007126 2.6e-37 160.2 230 43.0
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 3.4e-37 159.8 230 43.0
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 3.4e-37 159.8 230 43.0
BraA04t16263Z Brassica rapa HOM05D005750 ORTHO05D007126 4.4e-37 159.5 232 43.1
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 5.8e-37 159.1 227 43.2
HanXRQChr16g0510541 Helianthus annuus HOM05D005750 ORTHO05D007126 5.8e-37 159.1 207 46.4
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 7.6e-37 158.7 223 43.0
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 7.6e-37 158.7 179 50.8
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 9.9e-37 158.3 236 43.2
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 1.3e-36 157.9 232 42.7
AUR62025787 Chenopodium quinoa HOM05D005750 ORTHO05D007126 1.3e-36 157.9 183 51.9
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 1.7e-36 157.5 231 41.1
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 1.7e-36 157.5 231 41.1
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 6.4e-36 155.6 231 41.6
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 6.4e-36 155.6 231 41.6
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 6.4e-36 155.6 232 43.1
Hma1.2p1_0763F.1_g214560 Hydrangea macrophylla HOM05D005750 ORTHO05D007126 8.4e-36 155.2 185 50.8
Sabra06G0073600 Salix brachista HOM05D005750 ORTHO05D007126 1.1e-35 154.8 177 49.7
BcaB02g08472 Brassica carinata HOM05D005750 ORTHO05D007126 1.9e-35 154.1 234 43.2
CiPaw.10G154000 Carya illinoinensis HOM05D005750 ORTHO05D007126 1.6e-34 151.0 159 53.5
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 2.1e-34 150.6 170 48.8
HPP92_018186 Vanilla planifolia HOM05D005750 ORTHO05D007126 2.7e-34 150.2 197 42.1
Sabra16G0106800 Salix brachista HOM05D005750 ORTHO05D007126 3.5e-34 149.8 150 56.7
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 3.0e-33 146.7 173 49.1
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 3.0e-33 146.7 181 48.6
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 3.9e-33 146.4 165 47.3
Os01g0851400 Oryza sativa ssp. japonica HOM05D005750 ORTHO05D007126 5.6e-32 142.5 227 38.3
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 1.3e-31 141.4 170 47.6
Zm00001eb147810 Zea mays HOM05D005750 ORTHO05D007126 6.9e-30 135.6 228 41.2
Zm00001eb367490 Zea mays HOM05D005750 ORTHO05D007126 1.2e-29 134.8 229 38.9
Rhsim05G0204700 Rhododendron simsii HOM05D005750 ORTHO05D007126 1.5e-29 134.4 114 60.5
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 5.8e-29 132.5 170 45.3
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 1.1e-27 128.3 174 43.7
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 1.4e-27 127.9 168 40.5
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 8.1e-23 112.1 133 47.4
TAR636G1019 Trochodendron aralioides HOM05D008244 ORTHO05D009402 3.0e-17 93.6 228 34.6
SGA_v2.0_scaffold85G26769 Striga asiatica HOM05D005750 ORTHO05D007126 1.1e-16 91.7 163 37.4
TAR362G0980 Trochodendron aralioides HOM05D008244 ORTHO05D009402 1.1e-16 91.7 220 35.5
TAR636G1283 Trochodendron aralioides HOM05D000739 ORTHO05D009402 1.9e-16 90.9 217 34.1
TAR636G3091 Trochodendron aralioides HOM05D008244 ORTHO05D009402 4.0e-14 83.2 220 35.5
Pp3c7_8520 Physcomitrium patens HOM05D005750 ORTHO05D007126 1.5e-13 81.3 134 33.6
Nitab4.5_0006439g0020 Nicotiana tabacum HOM05D005750 ORTHO05D007126 5.8e-13 79.3 191 34.0
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 1.4e-11 74.7 156 31.4
AagrBONN_evm.TU.Sc2ySwM_344.3267 Anthoceros agrestis HOM05D005750 ORTHO05D007126 2.7e-10 70.5 166 31.3
TAR636G3117 Trochodendron aralioides HOM05D008244 ORTHO05D009402 1.8e-09 67.8 205 31.7
TAR636G1524 Trochodendron aralioides HOM05D008244 ORTHO05D009402 6.7e-09 65.9 64 56.2
TAR362G0489 Trochodendron aralioides HOM05D008244 ORTHO05D009402 8.7e-09 65.5 223 28.7
TAR636G1541 Trochodendron aralioides HOM05D008244 ORTHO05D009402 3.3e-08 63.5 223 30.5
TAR633G2532 Trochodendron aralioides HOM05D008244 ORTHO05D009402 5.7e-08 62.8 222 30.2
TAR636G2534 Trochodendron aralioides HOM05D008244 ORTHO05D009402 1.3e-07 61.6 93 46.2
TAR636G1005 Trochodendron aralioides HOM05D008244 ORTHO05D009402 1.4e-06 58.2 179 29.6
TAR636G0092 Trochodendron aralioides HOM05D008244 ORTHO05D009402 2.4e-06 57.4 48 56.2
TAR629G3474 Trochodendron aralioides HOM05D008244 ORTHO05D009402 3.1e-06 57.0 65 52.3


User provided reference genes

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