Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1784 Trochodendron aralioides HOM05D002443 ORTHO05D002674 5.8e-53 210.7 112 100.0
TAR369G0671 Trochodendron aralioides HOM05D002443 ORTHO05D002674 1.4e-35 152.9 116 74.1
Nn5g26787 Nelumbo nucifera HOM05D002443 ORTHO05D002674 3.7e-31 138.3 109 70.6
TAR633G0322 Trochodendron aralioides HOM05D002443 ORTHO05D002674 3.4e-29 131.7 95 74.7
TAR623G1570 Trochodendron aralioides HOM05D002443 ORTHO05D002674 2.5e-27 125.6 114 66.7
MBI03_g17683_MAGBIO Magnolia biondii HOM05D002443 ORTHO05D002674 3.9e-25 118.2 104 66.3
ClCG04G006140 Citrullus lanatus HOM05D002443 ORTHO05D002674 1.3e-23 113.2 106 60.4
Prupe.6G298000 Prunus persica HOM05D002443 ORTHO05D002674 2.8e-23 112.1 106 62.3
MBI03_g38730_MAGBIO Magnolia biondii HOM05D002443 ORTHO05D002674 3.7e-23 111.7 102 65.7
Dinv25369 Davidia involucrata HOM05D002443 ORTHO05D002674 4.8e-23 111.3 104 60.6
MELO3C025260.2 Cucumis melo HOM05D002443 ORTHO05D002674 8.2e-23 110.5 106 58.5
CsaV3_4G027420 Cucumis sativus L. HOM05D002443 ORTHO05D002674 8.2e-23 110.5 106 58.5
Dinv16937 Davidia involucrata HOM05D002443 ORTHO05D002674 8.2e-23 110.5 104 60.6
PSO339G5025 Papaver somniferum HOM05D002443 ORTHO05D002674 1.1e-22 110.2 102 63.7
PSO384G3147 Papaver somniferum HOM05D002443 ORTHO05D002674 1.1e-22 110.2 102 63.7
MD12G1193700 Malus domestica HOM05D002443 ORTHO05D002674 1.8e-22 109.4 106 61.3
Actinidia11481 Actinidia chinensis HOM05D002443 ORTHO05D002674 1.6e-21 106.3 105 61.0
CSS0003572 Camellia sinensis var. sinensis HOM05D002443 ORTHO05D002674 1.6e-21 106.3 106 61.3
CSS0033513 Camellia sinensis var. sinensis HOM05D002443 ORTHO05D002674 1.6e-21 106.3 106 61.3
Sed0008516 Sechium edule HOM05D002443 ORTHO05D002674 3.5e-21 105.1 106 55.7
CSS0034554 Camellia sinensis var. sinensis HOM05D002443 ORTHO05D002674 5.9e-21 104.4 105 58.1
CSS0042326 Camellia sinensis var. sinensis HOM05D002443 ORTHO05D002674 5.9e-21 104.4 105 58.1
RcHm_v2.0_Chr3g0459771 Rosa chinensis HOM05D002443 ORTHO05D002674 7.7e-21 104.0 108 63.0
vmacro20395 Vaccinium macrocarpon HOM05D002443 ORTHO05D002674 1.0e-20 103.6 106 60.4
Cpa.g.sc0.62 Carica papaya HOM05D002443 ORTHO05D002674 1.7e-20 102.8 107 60.7
Nitab4.5_0001629g0020 Nicotiana tabacum HOM05D002443 ORTHO05D002674 2.2e-20 102.4 121 57.0
Lj2A56T93 Lonicera japonica HOM05D002443 ORTHO05D002674 2.9e-20 102.1 113 55.8
Oeu007818.1 Olea europaea HOM05D002443 ORTHO05D002674 3.8e-20 101.7 113 52.2
Ciclev10011668m.g Citrus clementina HOM05D002443 ORTHO05D002674 5.0e-20 101.3 107 61.7
Rhsim05G0233700 Rhododendron simsii HOM05D002443 ORTHO05D002674 1.1e-19 100.1 106 59.4
PGR004G1715 Punica granatum HOM05D002443 ORTHO05D002674 1.5e-19 99.8 112 56.2
Atru.chr8.61 Acer truncatum HOM05D002443 ORTHO05D002674 3.2e-19 98.6 107 57.9
FAN02G2543 Fragaria x ananassa HOM05D002443 ORTHO05D002674 5.5e-19 97.8 107 58.9
Migut.J00010 Erythranthe guttata HOM05D002443 ORTHO05D002674 7.2e-19 97.4 110 54.5
ATR1127G140 Amborella trichopoda HOM05D002443 ORTHO05D002674 9.4e-19 97.1 109 56.9
FAN09G2118 Fragaria x ananassa HOM05D002443 ORTHO05D002674 3.6e-18 95.1 107 57.0
Solyc10g074810.2 Solanum lycopersicum HOM05D002443 ORTHO05D002674 3.6e-18 95.1 109 56.0
Oeu027658.1 Olea europaea HOM05D002443 ORTHO05D002674 4.7e-18 94.7 113 50.4
FvH4_6g09390 Fragaria vesca HOM05D002443 ORTHO05D002674 6.1e-18 94.4 107 57.0
FAN14G1995 Fragaria x ananassa HOM05D002443 ORTHO05D002674 6.1e-18 94.4 107 57.0
FAN05G4000 Fragaria x ananassa HOM05D002443 ORTHO05D002674 1.0e-17 93.6 105 57.1
Sopen10g027300 Solanum pennellii HOM05D002443 ORTHO05D002674 1.4e-17 93.2 109 55.0
PGSC0003DMG400027698 Solanum tuberosum HOM05D002443 ORTHO05D002674 1.4e-17 93.2 109 55.0
Nitab4.5_0003037g0160 Nicotiana tabacum HOM05D002443 ORTHO05D002674 1.8e-17 92.8 121 54.5
Manes.09G121400 Manihot esculenta HOM05D002443 ORTHO05D002674 5.2e-17 91.3 119 56.3
MSTRG.18927 Avicennia marina HOM05D002443 ORTHO05D002674 6.7e-17 90.9 114 49.1
SEGI_07400 Sequoiadendron giganteum HOM05D002443 ORTHO05D002674 2.6e-16 89.0 107 53.3
Eucgr.K01301 Eucalyptus grandis HOM05D002443 ORTHO05D002674 3.3e-16 88.6 112 53.6
SGA_v2.0_scaffold373G50196 Striga asiatica HOM05D002443 ORTHO05D002674 3.3e-16 88.6 117 48.7
Manes.08G167800 Manihot esculenta HOM05D002443 ORTHO05D002674 3.7e-15 85.1 118 55.1
TWI77G0643 Tripterygium wilfordii HOM05D002443 ORTHO05D002674 1.1e-14 83.6 114 53.5
TWI53G1036 Tripterygium wilfordii HOM05D002443 ORTHO05D002674 1.4e-14 83.2 109 55.0
QL07p031356 Quercus lobata HOM05D002443 ORTHO05D002674 1.8e-14 82.8 115 53.0
CSS0021161 Camellia sinensis var. sinensis HOM05D002443 ORTHO05D002674 5.3e-14 81.3 107 54.2
TWI74G1674 Tripterygium wilfordii HOM05D002443 ORTHO05D002674 9.1e-14 80.5 113 53.1
HPP92_028107 Vanilla planifolia HOM05D002443 ORTHO05D002674 2.0e-13 79.3 106 47.2
COL.COLO4_06161 Corchorus olitorius HOM05D002443 ORTHO05D002674 3.5e-13 78.6 107 50.5
CiPaw.10G166900 Carya illinoinensis HOM05D002443 ORTHO05D002674 4.5e-13 78.2 104 55.8
Actinidia07778 Actinidia chinensis HOM05D002443 ORTHO05D002674 1.0e-12 77.0 100 52.0
GSVIVG01029861001 Vitis vinifera HOM05D002443 ORTHO05D002674 1.0e-12 77.0 86 61.6
Dinv34510 Davidia involucrata HOM05D002443 ORTHO05D002674 1.7e-12 76.3 112 45.5
Hma1.2p1_0264F.1_g105830 Hydrangea macrophylla HOM05D002443 ORTHO05D002674 2.2e-12 75.9 109 45.0
Cfa016998 Carpinus fangiana HOM05D002443 ORTHO05D002674 3.8e-12 75.1 101 52.5
Haze_21206 Corylus avellana HOM05D002443 ORTHO05D002674 3.8e-12 75.1 101 52.5
Sabra06G0087000 Salix brachista HOM05D002443 ORTHO05D002674 3.8e-12 75.1 118 48.3
CSS0037181 Camellia sinensis var. sinensis HOM05D002443 ORTHO05D002674 5.0e-12 74.7 86 51.2
Duzib151G0873 Durio zibethinus HOM05D002443 ORTHO05D002674 5.0e-12 74.7 107 52.3
Sabra04G0157600 Salix brachista HOM05D002443 ORTHO05D002674 5.0e-12 74.7 118 54.2
Sabra06G0087100 Salix brachista HOM05D002443 ORTHO05D002674 5.0e-12 74.7 118 48.3
Aa31LG5G11330 Aethionema arabicum HOM05D002443 ORTHO05D002674 6.5e-12 74.3 110 51.8
CSS0010803 Camellia sinensis var. sinensis HOM05D002443 ORTHO05D002674 1.1e-11 73.6 80 53.8
Thecc.04G146400 Theobroma cacao HOM05D002443 ORTHO05D002674 1.1e-11 73.6 107 51.4
Lj1A969G91 Lonicera japonica HOM05D002443 ORTHO05D002674 2.5e-11 72.4 114 46.5
Potri.016G141200 Populus trichocarpa HOM05D002443 ORTHO05D002674 2.5e-11 72.4 117 51.3
Sc20g0007270 Simmondsia chinensis HOM05D002443 ORTHO05D002674 3.2e-11 72.0 102 48.0
Sc20g0007610 Simmondsia chinensis HOM05D002443 ORTHO05D002674 3.2e-11 72.0 102 48.0
Potri.006G111800 Populus trichocarpa HOM05D002443 ORTHO05D002674 4.2e-11 71.6 119 47.9
CDE04G0087 Ceratophyllum demersum HOM05D002443 ORTHO05D002674 7.2e-11 70.9 63 63.5
CiPaw.09G223600 Carya illinoinensis HOM05D002443 ORTHO05D002674 9.4e-11 70.5 92 53.3
A03p04790 Brassica napus HOM05D002443 ORTHO05D002674 1.2e-10 70.1 101 47.5
Hund03685 Selenicereus undatus HOM05D002443 ORTHO05D002674 1.6e-10 69.7 109 47.7
THA.LOC104816151 Tarenaya hassleriana HOM05D002443 ORTHO05D002674 2.1e-10 69.3 101 51.5
CDE07G0573 Ceratophyllum demersum HOM05D002443 ORTHO05D002674 3.6e-10 68.6 108 45.4
Dinv21867 Davidia involucrata HOM05D002443 ORTHO05D002674 3.6e-10 68.6 118 41.5
Sp6g41200 Schrenkiella parvula HOM05D002443 ORTHO05D002674 2.3e-09 65.9 100 49.0
Ah.15g089800 Amaranthus hybridus HOM05D002443 ORTHO05D002674 4.0e-09 65.1 131 38.9
BcaB01g05496 Brassica carinata HOM05D002443 ORTHO05D002674 5.2e-09 64.7 106 46.2
C03p05500 Brassica napus HOM05D002443 ORTHO05D002674 5.2e-09 64.7 107 45.8
BolC3t13060H Brassica oleracea HOM05D002443 ORTHO05D002674 5.2e-09 64.7 106 46.2
AUR62029804 Chenopodium quinoa HOM05D002443 ORTHO05D002674 6.8e-09 64.3 81 50.6
BraA03t09819Z Brassica rapa HOM05D002443 ORTHO05D002674 1.2e-08 63.5 102 46.1
Gohir.A02G000900 Gossypium hirsutum HOM05D002443 ORTHO05D002674 1.2e-08 63.5 98 50.0
Gohir.D02G001200 Gossypium hirsutum HOM05D002443 ORTHO05D002674 1.2e-08 63.5 98 50.0
Gorai.005G001700 Gossypium raimondii HOM05D002443 ORTHO05D002674 1.2e-08 63.5 98 50.0
Thhalv10013616m.g Eutrema salsugineum HOM05D002443 ORTHO05D002674 2.0e-08 62.8 100 46.0
Peaxi162Scf00374g00417 Petunia axillaris HOM05D002443 ORTHO05D002674 2.0e-08 62.8 125 40.0
AL6G10070 Arabidopsis lyrata HOM05D002443 ORTHO05D002674 2.6e-08 62.4 100 47.0
MELO3C020174.2 Cucumis melo HOM05D002443 ORTHO05D002674 2.6e-08 62.4 115 38.3
Mapoly0159s0019 Marchantia polymorpha HOM05D002443 ORTHO05D002674 3.4e-08 62.0 108 42.6
Glyma.18G217900 Glycine max HOM05D002443 ORTHO05D002674 4.4e-08 61.6 95 50.5
Carub.0024s0008 Capsella rubella HOM05D002443 ORTHO05D002674 5.7e-08 61.2 100 48.0
Dinv28756 Davidia involucrata HOM05D002443 ORTHO05D002674 9.8e-08 60.5 97 45.4
CSS0032994 Camellia sinensis var. sinensis HOM05D002443 ORTHO05D002674 1.3e-07 60.1 105 44.8
Cc06_g00180 Coffea canephora HOM05D002443 ORTHO05D002674 1.7e-07 59.7 104 44.2
Sabra13G0128000 Salix brachista HOM05D002443 ORTHO05D002674 1.7e-07 59.7 110 40.9
Rhsim09G0186900 Rhododendron simsii HOM05D002443 ORTHO05D002674 2.2e-07 59.3 81 46.9
GSVIVG01024532001 Vitis vinifera HOM05D002443 ORTHO05D002674 2.2e-07 59.3 79 53.2
Lsat_1_v5_gn_8_108440 Lactuca sativa HOM05D002443 ORTHO05D002674 2.8e-07 58.9 109 43.1
PGSC0003DMG400027593 Solanum tuberosum HOM05D002443 ORTHO05D002674 2.8e-07 58.9 91 39.6
ClCG07G005290 Citrullus lanatus HOM05D002443 ORTHO05D002674 3.7e-07 58.5 120 35.8
Lj1g0010348 Lotus japonicus HOM05D002443 ORTHO05D002674 6.3e-07 57.8 106 43.4
Pp3c2_29180 Physcomitrium patens HOM05D002443 ORTHO05D002674 8.3e-07 57.4 106 41.5
Pp3c2_29249 Physcomitrium patens HOM05D002443 ORTHO05D002674 8.3e-07 57.4 106 41.5
Solyc06g048520.3 Solanum lycopersicum HOM05D002443 ORTHO05D002674 8.3e-07 57.4 91 38.5
Medtr7g074140 Medicago truncatula HOM05D002443 ORTHO05D002674 1.1e-06 57.0 95 47.4
Sopen06g014680 Solanum pennellii HOM05D002443 ORTHO05D002674 1.1e-06 57.0 91 39.6
Phvul.008G078900 Phaseolus vulgaris HOM05D002443 ORTHO05D002674 1.8e-06 56.2 97 47.4
Eucgr.G03167 Eucalyptus grandis HOM05D002443 ORTHO05D002674 2.4e-06 55.8 112 37.5
Potri.013G160000 Populus trichocarpa HOM05D002443 ORTHO05D002674 2.4e-06 55.8 110 39.1
CsaV3_5G011140 Cucumis sativus L. HOM05D002443 ORTHO05D002674 3.1e-06 55.5 123 35.0
AT5G01960 Arabidopsis thaliana HOM05D002443 ORTHO05D002674 4.1e-06 55.1 100 44.0
Lj2A1104G70 Lonicera japonica HOM05D002443 ORTHO05D002674 4.1e-06 55.1 101 41.6
LjContig00155g0010908 Lotus japonicus HOM05D002443 ORTHO05D002674 4.1e-06 55.1 123 35.8
HPP92_017909 Vanilla planifolia HOM05D002443 ORTHO05D002674 5.4e-06 54.7 82 42.7
TPR.G24321 Trifolium pratense HOM05D002443 ORTHO05D002674 7.0e-06 54.3 102 46.1
Solyc03g095450.3 Solanum lycopersicum HOM05D002443 ORTHO05D002674 9.1e-06 53.9 102 36.3


User provided reference genes

Program Settings