Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1761 Trochodendron aralioides HOM05D004159 ORTHO05D415208 1.7e-55 219.2 114 100.0
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 6.6e-28 127.5 75 88.0
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 8.9e-25 117.1 75 78.7
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 1.6e-18 96.3 75 62.7
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 2.1e-18 95.9 75 64.0
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 2.1e-18 95.9 77 62.3
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 2.8e-18 95.5 82 54.9
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 3.6e-18 95.1 75 66.7
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 3.6e-18 95.1 75 58.7
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 8.4e-15 84.0 83 54.2
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 3.2e-14 82.0 75 60.0
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 4.2e-14 81.6 85 52.9
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 5.4e-14 81.3 74 60.8
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 5.4e-14 81.3 82 50.0
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 2.1e-13 79.3 76 57.9
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 7.9e-13 77.4 75 53.3
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 3.0e-12 75.5 75 52.0
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 8.7e-12 73.9 74 54.1
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 9.6e-11 70.5 75 52.0
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 1.3e-10 70.1 76 48.7
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.6e-10 69.7 76 48.7
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 4.8e-10 68.2 76 47.4
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 4.8e-10 68.2 73 58.9
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 6.2e-10 67.8 72 51.4
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 8.1e-10 67.4 75 48.0
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.1e-09 67.0 76 46.1
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 1.4e-09 66.6 75 48.0
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 1.8e-09 66.2 76 48.7
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 1.8e-09 66.2 71 46.5
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 1.8e-09 66.2 75 50.7
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 2.4e-09 65.9 73 45.2
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 2.4e-09 65.9 75 46.7
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 3.1e-09 65.5 88 40.9
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 5.3e-09 64.7 82 45.1
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 6.9e-09 64.3 82 46.3
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 6.9e-09 64.3 75 46.7
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 6.9e-09 64.3 81 49.4
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 6.9e-09 64.3 74 48.6
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 9.0e-09 63.9 76 44.7
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 1.2e-08 63.5 75 44.0
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 1.2e-08 63.5 75 44.0
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 1.5e-08 63.2 75 44.0
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 2.6e-08 62.4 75 46.7
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 2.6e-08 62.4 75 44.0
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 3.4e-08 62.0 74 48.6
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 4.5e-08 61.6 76 46.1
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 5.8e-08 61.2 75 50.7
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 7.6e-08 60.8 76 43.4
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 1.7e-07 59.7 76 43.4
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 1.7e-07 59.7 75 46.7
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 1.7e-07 59.7 74 47.3
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 2.2e-07 59.3 74 45.9
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.9e-07 58.9 71 42.3
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 2.9e-07 58.9 75 42.7
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 3.8e-07 58.5 74 40.5
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 4.9e-07 58.2 83 41.0
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 4.9e-07 58.2 67 47.8
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 6.4e-07 57.8 75 46.7
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 6.4e-07 57.8 75 40.0
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 8.4e-07 57.4 83 44.6
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 8.4e-07 57.4 75 41.3
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 8.4e-07 57.4 75 41.3
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 8.4e-07 57.4 76 40.8
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 1.1e-06 57.0 76 40.8
Sc03g0007490 Simmondsia chinensis HOM05D004159 ORTHO05D388831 1.1e-06 57.0 71 43.7
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 1.1e-06 57.0 88 39.8
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.4e-06 56.6 74 39.2
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.4e-06 56.6 71 40.8
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.4e-06 56.6 71 40.8
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 1.4e-06 56.6 75 40.0
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 1.4e-06 56.6 76 43.4
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 1.9e-06 56.2 83 42.2
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 1.9e-06 56.2 75 41.3
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 1.9e-06 56.2 75 41.3
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 1.9e-06 56.2 75 41.3
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 1.9e-06 56.2 79 43.0
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.9e-06 56.2 80 41.2
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 2.4e-06 55.8 84 38.1
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 3.2e-06 55.5 71 39.4
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 3.2e-06 55.5 71 39.4
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 4.2e-06 55.1 75 46.7
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 4.2e-06 55.1 76 40.8
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 5.5e-06 54.7 83 36.1
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 5.5e-06 54.7 76 40.8
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 5.5e-06 54.7 80 40.0
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 7.1e-06 54.3 83 39.8
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 7.1e-06 54.3 76 46.1
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 9.3e-06 53.9 75 44.0


User provided reference genes

Program Settings