Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 2.7e-288 994.6 480 100.0
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 1.4e-273 945.7 480 93.8
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 4.7e-261 904.0 480 90.0
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 4.7e-261 904.0 480 90.0
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 3.1e-260 901.4 481 90.2
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 2.9e-258 894.8 481 89.4
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 4.9e-258 894.0 480 87.7
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 5.4e-257 890.6 480 87.1
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 2.7e-256 888.3 480 87.3
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 3.5e-256 887.9 480 87.1
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 4.6e-256 887.5 480 88.3
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 7.8e-256 886.7 480 87.7
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 1.7e-255 885.6 478 88.7
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 3.0e-255 884.8 478 88.5
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 9.6e-254 879.8 478 88.1
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 2.8e-253 878.2 481 87.3
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 3.6e-253 877.9 480 87.3
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 6.2e-253 877.1 487 86.4
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 3.1e-252 874.8 478 87.9
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 5.3e-252 874.0 480 86.9
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.5e-251 872.5 480 86.0
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 2.6e-251 871.7 481 86.1
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 3.4e-251 871.3 479 86.2
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 4.5e-251 870.9 480 85.6
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 4.5e-251 870.9 479 84.3
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 4.5e-251 870.9 480 86.9
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 9.9e-251 869.8 480 86.7
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 1.3e-250 869.4 483 86.5
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 2.2e-250 868.6 480 86.9
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 2.9e-250 868.2 480 86.0
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 4.9e-250 867.5 480 85.6
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 1.1e-249 866.3 480 84.6
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 1.4e-249 865.9 476 86.3
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.4e-249 865.9 478 85.4
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 1.4e-249 865.9 480 84.8
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 3.2e-249 864.8 484 85.5
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 3.2e-249 864.8 478 85.1
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 4.2e-249 864.4 477 85.1
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 9.3e-249 863.2 473 86.9
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 9.3e-249 863.2 480 85.2
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 1.2e-248 862.8 480 85.2
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 1.6e-248 862.4 483 83.6
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 4.6e-248 860.9 480 84.2
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 1.3e-247 859.4 481 84.8
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 5.1e-247 857.4 480 83.8
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 5.1e-247 857.4 477 83.6
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 6.7e-247 857.1 477 83.4
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 1.9e-246 855.5 480 84.8
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 1.3e-245 852.8 477 84.1
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 3.7e-245 851.3 481 85.0
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 6.2e-245 850.5 481 84.8
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 6.2e-245 850.5 486 82.3
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 8.1e-245 850.1 481 84.6
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 1.4e-244 849.4 480 83.1
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 5.3e-244 847.4 480 83.3
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 6.9e-244 847.0 480 83.5
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 1.5e-243 845.9 496 82.7
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 2.6e-243 845.1 461 86.6
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 5.8e-243 844.0 476 84.2
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 2.9e-242 841.6 480 82.3
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 3.8e-242 841.3 481 83.8
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 4.9e-242 840.9 481 83.8
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 6.4e-242 840.5 481 83.2
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 2.5e-241 838.6 481 84.0
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 2.5e-241 838.6 446 87.7
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 5.5e-241 837.4 481 83.2
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 1.6e-240 835.9 481 83.4
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 2.1e-240 835.5 478 83.7
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 2.1e-240 835.5 481 83.0
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 2.7e-240 835.1 481 84.0
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 7.9e-240 833.6 479 83.7
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 2.3e-239 832.0 473 83.7
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 2.3e-239 832.0 460 84.6
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 3.0e-239 831.6 481 82.3
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 3.9e-239 831.2 441 87.3
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 5.1e-239 830.9 481 81.5
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 8.7e-239 830.1 481 81.7
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 8.7e-239 830.1 481 82.3
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 1.1e-238 829.7 481 81.5
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 1.1e-238 829.7 481 83.2
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 1.5e-238 829.3 481 83.4
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 1.9e-238 828.9 480 81.0
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 3.3e-238 828.2 481 81.1
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 3.3e-238 828.2 481 82.1
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 3.3e-238 828.2 473 83.1
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 5.6e-238 827.4 481 81.5
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 5.6e-238 827.4 455 84.6
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 7.4e-238 827.0 473 82.9
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 1.6e-237 825.9 481 81.3
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 3.7e-237 824.7 474 82.3
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 8.2e-237 823.5 493 81.3
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 1.4e-236 822.8 481 82.1
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 2.4e-236 822.0 478 81.6
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 5.3e-236 820.8 507 79.3
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 2.6e-235 818.5 489 80.0
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 6.5e-234 813.9 480 81.2
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 1.6e-232 809.3 475 82.1
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 6.0e-232 807.4 483 80.3
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 9.7e-230 800.0 506 78.5
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.4e-223 779.6 501 77.0
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.3e-223 778.9 478 78.0
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 2.0e-222 775.8 480 79.4
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 2.5e-222 775.4 508 76.8
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 6.3e-221 770.8 461 80.7
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 9.4e-217 756.9 481 77.1
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 1.2e-216 756.5 481 76.7
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 1.6e-216 756.1 495 77.0
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 4.2e-209 731.5 385 88.1
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 4.8e-205 718.0 449 74.4
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 1.6e-203 713.0 473 70.8
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 1.0e-202 710.3 466 73.2
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 1.9e-201 706.1 483 72.9
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 5.5e-201 704.5 472 70.3
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 4.1e-188 661.8 466 70.8
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 5.0e-178 628.2 370 78.4
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 3.6e-176 622.1 370 78.1
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 3.6e-176 622.1 461 67.0
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 2.9e-173 612.5 480 65.8
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 8.9e-151 537.7 419 65.9
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 3.4e-150 535.8 304 81.6
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 3.6e-144 515.8 281 87.5
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 4.8e-144 515.4 304 79.9
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 9.0e-143 511.1 275 88.0
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 1.6e-139 500.4 410 60.5
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 2.1e-136 490.0 464 53.0
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 9.9e-134 481.1 309 76.7
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 3.1e-127 459.5 308 72.7
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 5.1e-106 389.0 227 78.9
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 4.3e-105 386.0 211 87.7
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 1.7e-101 374.0 228 77.6
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 1.7e-101 374.0 228 77.6
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 3.0e-98 363.2 419 48.9
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 2.1e-91 340.5 200 83.5
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 1.8e-90 337.4 466 44.6
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 3.5e-78 296.6 430 43.5
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 3.2e-76 290.0 149 87.2
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 4.5e-70 269.6 182 69.8
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 2.9e-69 266.9 182 69.2
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 1.0e-66 258.5 179 70.4
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 8.9e-66 255.4 179 69.8
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 4.4e-49 199.9 99 87.9
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 4.4e-49 199.9 99 87.9
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 1.0e-45 188.7 111 80.2
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 9.2e-39 165.6 95 88.4
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 3.0e-37 160.6 97 76.3
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 5.1e-37 159.8 105 71.4
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 6.8e-34 149.4 92 77.2
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 7.6e-33 146.0 77 83.1
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 3.0e-29 134.0 77 79.2
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 3.9e-21 107.1 56 85.7
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 4.3e-20 103.6 65 70.8
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 7.4e-20 102.8 135 40.0
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 7.6e-17 92.8 72 66.7
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 7.6e-17 92.8 72 66.7
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 1.4e-15 88.6 78 55.1
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 7.1e-15 86.3 46 82.6
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 1.2e-14 85.5 46 87.0
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 7.9e-14 82.8 72 61.1
Lsat_1_v5_gn_9_37000 Lactuca sativa HOM05D004186 ORTHO05D011383 3.3e-12 77.4 58 60.3
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 3.1e-10 70.9 34 88.2
C08p17140 Brassica napus HOM05D004186 ORTHO05D011383 3.8e-08 63.9 58 55.2
BolC8t49341H Brassica oleracea HOM05D004186 ORTHO05D011383 3.8e-08 63.9 58 55.2
C07p46470 Brassica napus HOM05D001159 ORTHO05D011383 4.9e-08 63.5 58 56.9
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 6.5e-08 63.2 34 85.3
BcaC05g27566 Brassica carinata HOM05D001159 ORTHO05D011383 7.1e-07 59.7 58 55.2
C05p35490 Brassica napus HOM05D001159 ORTHO05D011383 7.1e-07 59.7 58 55.2
C09p03000 Brassica napus HOM05D001159 ORTHO05D011383 9.3e-07 59.3 58 53.4
BolC9t53230H Brassica oleracea HOM05D001159 ORTHO05D011383 9.3e-07 59.3 58 53.4
BolC7t45165H Brassica oleracea HOM05D001159 ORTHO05D011383 1.6e-06 58.5 58 55.2
BcaC07g38783 Brassica carinata HOM05D002592 ORTHO05D011383 2.1e-06 58.2 84 40.5
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 2.7e-06 57.8 64 51.6


User provided reference genes

Program Settings