Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 0.0e+00 1545.4 787 100.0
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 0.0e+00 1255.0 763 84.3
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 0.0e+00 1244.2 787 79.4
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 0.0e+00 1232.2 764 82.3
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 0.0e+00 1231.1 769 81.1
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 0.0e+00 1223.4 767 81.6
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 0.0e+00 1220.3 766 81.9
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 0.0e+00 1219.5 762 82.4
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 0.0e+00 1211.4 735 83.8
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 0.0e+00 1211.1 776 79.3
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 0.0e+00 1204.1 765 80.3
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 0.0e+00 1192.2 789 77.1
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 0.0e+00 1191.4 779 78.9
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 0.0e+00 1172.1 762 78.7
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 0.0e+00 1166.4 769 78.8
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 0.0e+00 1164.8 774 77.9
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 0.0e+00 1161.4 785 77.6
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 0.0e+00 1155.6 758 78.1
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 0.0e+00 1151.0 776 76.2
Aqoxy1G00017 Aquilegia oxysepala HOM05D004811 ORTHO05D006888 0.0e+00 1147.9 764 77.9
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 0.0e+00 1147.1 771 76.7
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 0.0e+00 1135.6 767 77.2
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 0.0e+00 1132.9 767 76.4
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 0.0e+00 1132.1 758 78.0
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 0.0e+00 1132.1 767 76.3
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 0.0e+00 1128.2 769 75.6
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 0.0e+00 1124.4 774 74.4
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 0.0e+00 1124.4 785 73.9
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 0.0e+00 1124.0 759 74.8
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 0.0e+00 1122.8 782 74.2
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 0.0e+00 1122.8 769 74.8
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 0.0e+00 1118.2 775 75.1
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 0.0e+00 1116.7 777 73.7
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 0.0e+00 1114.0 766 74.7
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 0.0e+00 1112.8 772 74.2
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 0.0e+00 1110.9 767 73.3
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 0.0e+00 1110.9 777 73.6
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 0.0e+00 1107.0 768 73.0
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1105.5 781 74.3
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 0.0e+00 1101.7 775 72.8
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 0.0e+00 1101.7 761 73.2
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 0.0e+00 1100.1 770 73.8
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 0.0e+00 1099.0 766 73.8
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 0.0e+00 1098.6 766 76.1
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 0.0e+00 1097.8 770 73.6
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 0.0e+00 1096.6 786 71.5
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 0.0e+00 1096.6 766 76.0
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 0.0e+00 1096.3 781 73.2
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 0.0e+00 1091.3 774 72.5
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1090.9 801 72.3
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 0.0e+00 1085.5 761 73.5
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1077.4 820 70.7
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 1.1e-311 1073.2 776 71.0
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 1.4e-310 1069.3 761 72.1
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 1.4e-310 1069.3 764 72.9
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 2.0e-309 1065.4 769 73.0
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 2.0e-309 1065.4 770 71.7
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 1.0e-308 1063.1 766 73.2
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 1.6e-306 1055.8 763 70.9
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 3.0e-305 1051.6 773 72.2
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 3.6e-298 1028.1 763 69.3
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 4.0e-297 1024.6 772 70.5
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 8.2e-295 1016.9 766 67.9
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 3.1e-294 1015.0 765 71.0
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 1.0e-292 1010.0 765 68.6
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 1.7e-292 1009.2 766 68.4
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 6.5e-292 1007.3 765 68.2
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 3.2e-291 1005.0 779 69.6
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 2.1e-290 1002.3 763 68.3
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 4.7e-290 1001.1 757 68.4
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 6.1e-290 1000.7 765 67.2
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 6.1e-290 1000.7 765 67.2
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 2.3e-289 998.8 765 67.3
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 5.2e-289 997.7 946 58.7
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 4.4e-288 994.6 768 67.4
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 2.8e-287 991.9 764 67.7
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 4.1e-286 988.0 765 67.3
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 9.1e-286 986.9 789 65.4
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 5.7e-280 967.6 775 65.7
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 2.2e-279 965.7 736 66.6
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 5.0e-276 954.5 685 73.1
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 1.5e-275 953.0 770 65.1
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 1.5e-275 953.0 765 65.1
QL02p036870 Quercus lobata HOM05D004811 ORTHO05D006888 1.5e-275 953.0 520 88.8
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 2.5e-275 952.2 763 66.3
QL02p036407 Quercus lobata HOM05D004811 ORTHO05D006888 2.5e-275 952.2 510 90.4
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 8.3e-271 937.2 772 64.5
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 1.8e-270 936.0 721 67.4
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.9e-263 912.1 647 74.5
MD09G1000100 Malus domestica HOM05D004811 ORTHO05D006888 2.9e-263 912.1 510 85.9
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 6.4e-263 911.0 772 63.6
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 4.1e-262 908.3 761 65.7
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 5.2e-257 891.3 761 63.1
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 8.9e-249 864.0 773 59.5
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 4.7e-242 841.6 759 59.9
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 1.6e-237 826.6 833 52.5
SGA_v2.0_scaffold55G19835 Striga asiatica HOM05D004811 ORTHO05D006888 1.4e-233 813.5 658 64.1
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 8.1e-226 787.7 871 50.3
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 3.4e-216 755.7 777 51.5
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 1.0e-207 727.6 761 53.9
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 1.8e-201 706.8 721 53.5
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 1.1e-195 687.6 755 51.8
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 4.8e-194 682.2 748 51.3
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 1.8e-193 680.2 770 51.9
CBR_g19801 Chara braunii HOM05D004811 ORTHO05D006888 5.3e-193 678.7 796 47.1
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.5e-192 677.2 755 51.3
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 5.0e-191 672.2 749 50.9
Cpa.g.sc111.49 Carica papaya HOM05D004811 ORTHO05D006888 4.2e-174 615.9 334 87.4
Nitab4.5_0016907g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 9.5e-166 588.2 465 69.0
Zm00001eb287160 Zea mays HOM05D004811 ORTHO05D006888 1.8e-132 477.6 465 57.8
HPP92_028180 Vanilla planifolia HOM05D004811 ORTHO05D006888 6.8e-132 475.7 414 59.9
Hund15153 Selenicereus undatus HOM05D004811 ORTHO05D006888 2.9e-106 390.6 217 85.3
CAN.G606.11 Capsicum annuum HOM05D004811 ORTHO05D006888 6.2e-101 372.9 240 77.1
CAN.G606.10 Capsicum annuum HOM05D004811 ORTHO05D006888 6.9e-92 342.8 182 89.0
PRCOL_00007255 Prasinoderma coloniale HOM05D004811 ORTHO05D006888 6.9e-92 342.8 549 35.7
MCO07G203 Micromonas commoda HOM05D004811 ORTHO05D006888 1.2e-91 342.0 582 34.0
Cre12.g506050 Chlamydomonas reinhardtii HOM05D004811 ORTHO05D006888 2.2e-82 311.2 521 35.5
CAN.G606.9 Capsicum annuum HOM05D004811 ORTHO05D006888 6.7e-79 299.7 376 51.6
QL02p036387 Quercus lobata HOM05D004811 ORTHO05D006888 1.2e-75 288.9 248 68.5
QL02p036851 Quercus lobata HOM05D004811 ORTHO05D006888 7.7e-75 286.2 248 67.7
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 4.2e-73 280.4 289 59.2
HPP92_028179 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.4e-60 238.8 169 69.2
Nitab4.5_0009440g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 5.3e-60 236.9 130 86.2
Actinidia09194 Actinidia chinensis HOM05D004811 ORTHO05D006888 9.8e-54 216.1 132 80.3
TPR.G39924 Trifolium pratense HOM05D004811 ORTHO05D006888 1.7e-50 205.3 214 58.4
Sed0006977 Sechium edule HOM05D004811 ORTHO05D006888 4.7e-48 197.2 129 74.4
Cpa.g.sc111.45 Carica papaya HOM05D004811 ORTHO05D006888 3.0e-47 194.5 185 64.3
TPR.G33000 Trifolium pratense HOM05D004811 ORTHO05D006888 1.2e-46 192.6 112 80.4
Hund15156 Selenicereus undatus HOM05D004811 ORTHO05D006888 2.6e-38 164.9 170 62.4
Cpa.g.sc111.48 Carica papaya HOM05D004811 ORTHO05D006888 6.2e-32 143.7 99 72.7
Actinidia09197 Actinidia chinensis HOM05D004811 ORTHO05D006888 9.8e-30 136.3 148 52.0
Actinidia09195 Actinidia chinensis HOM05D004811 ORTHO05D006888 5.4e-20 104.0 55 85.5
SGA_v2.0_scaffold753G53552 Striga asiatica HOM05D004811 ORTHO05D006888 1.0e-18 99.8 131 51.9
Thhalv10029084m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 1.1e-17 96.3 66 71.2
SalBow3G0991 Salvia bowleyana HOM05D004811 ORTHO05D006888 2.5e-17 95.1 79 59.5
Actinidia09206 Actinidia chinensis HOM05D004811 ORTHO05D009793 7.3e-17 93.6 149 42.3
Mapoly0104s0010 Marchantia polymorpha HOM05D002279 ORTHO05D002644 1.3e-13 82.8 543 20.3
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 1.7e-13 82.4 494 22.1
PSO541G4576 Papaver somniferum HOM05D000002 ORTHO05D000001 8.7e-10 70.1 59 55.9
HPP92_021812 Vanilla planifolia HOM05D002279 ORTHO05D002644 4.3e-09 67.8 507 22.5
Eucgr.K01429 Eucalyptus grandis HOM05D002279 ORTHO05D002644 4.8e-08 64.3 350 22.6
HPP92_019939 Vanilla planifolia HOM05D002279 ORTHO05D002644 6.2e-08 63.9 338 21.0
C03p50580 Brassica napus HOM05D004811 ORTHO05D017514 8.1e-08 63.5 112 37.5
C09p52830 Brassica napus HOM05D004811 ORTHO05D017514 1.4e-07 62.8 116 35.3
BolC3t17347H Brassica oleracea HOM05D004811 ORTHO05D017514 1.4e-07 62.8 112 37.5
BolC9t58149H Brassica oleracea HOM05D004811 ORTHO05D017514 1.4e-07 62.8 116 35.3
Os03g0210400 Oryza sativa ssp. japonica HOM05D002279 ORTHO05D002644 2.4e-07 62.0 583 20.1
PGR119G1284 Punica granatum HOM05D002279 ORTHO05D002644 5.3e-07 60.8 428 21.0
Gohir.A02G097201 Gossypium hirsutum HOM05D004811 ORTHO05D006888 9.0e-07 60.1 96 43.8
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 1.2e-06 59.7 412 20.1
BcaC04g19678 Brassica carinata HOM05D004811 ORTHO05D017514 2.0e-06 58.9 84 40.5
Zm00001eb007090 Zea mays HOM05D002279 ORTHO05D002644 5.8e-06 57.4 478 20.5
Gohir.D01G069250 Gossypium hirsutum HOM05D004811 ORTHO05D006888 9.9e-06 56.6 64 50.0


User provided reference genes

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