Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1145 Trochodendron aralioides HOM05D002270 ORTHO05D002866 0.0e+00 1771.5 881 100.0
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 1.7e-309 1065.8 886 61.5
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 3.1e-306 1055.0 878 61.6
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 2.4e-287 992.3 874 57.6
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 3.5e-286 988.4 877 57.9
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 6.9e-282 974.2 964 53.1
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 1.2e-278 963.4 912 55.2
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 1.2e-278 963.4 876 57.3
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 5.1e-269 931.4 876 54.2
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 3.7e-267 925.2 876 55.5
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 5.3e-266 921.4 876 55.6
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 9.3e-263 910.6 913 53.5
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 1.0e-261 907.1 877 52.2
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 4.0e-258 895.2 877 53.6
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 1.1e-255 887.1 880 51.2
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 2.7e-254 882.5 887 53.3
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 1.0e-253 880.6 878 52.4
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 5.1e-253 878.2 877 51.5
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 8.7e-253 877.5 906 51.9
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 5.7e-252 874.8 911 52.3
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 4.8e-251 871.7 866 51.0
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 4.8e-243 845.1 889 50.1
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 6.9e-242 841.3 872 50.5
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.2e-241 840.5 885 49.9
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 2.6e-241 839.3 888 49.5
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 4.5e-241 838.6 876 49.7
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 2.7e-238 829.3 906 49.7
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 6.1e-238 828.2 876 48.9
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 6.1e-238 828.2 872 50.1
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 4.8e-235 818.5 872 49.7
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 2.3e-229 799.7 892 48.0
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 1.1e-228 797.3 886 48.9
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 2.6e-228 796.2 863 49.7
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 3.7e-227 792.3 912 47.4
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 5.0e-224 781.9 910 47.3
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 1.1e-223 780.8 915 47.0
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 1.9e-223 780.0 876 47.7
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 5.2e-221 771.9 876 47.5
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 3.7e-219 765.8 880 46.9
vmacro22217 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 4.8e-219 765.4 720 53.6
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 1.8e-218 763.5 896 46.2
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 3.1e-218 762.7 902 46.3
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 6.5e-216 755.0 879 46.1
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 8.5e-216 754.6 874 46.1
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 3.2e-215 752.7 888 46.6
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 2.1e-214 750.0 891 46.7
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 1.0e-213 747.7 879 46.0
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 2.0e-212 743.4 902 44.9
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 7.5e-212 741.5 905 45.2
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 1.3e-211 740.7 895 44.7
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 8.3e-211 738.0 915 44.6
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 5.9e-209 731.9 873 45.4
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 5.9e-209 731.9 873 45.2
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 5.9e-209 731.9 895 46.0
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 1.3e-208 730.7 872 45.1
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 6.6e-208 728.4 890 45.6
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 1.1e-207 727.6 895 44.5
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 2.5e-207 726.5 892 45.6
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 2.3e-205 719.9 870 45.3
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 2.3e-205 719.9 882 44.4
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 1.2e-204 717.6 883 45.0
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 1.3e-203 714.1 886 44.5
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 1.1e-202 711.1 875 44.6
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.3e-200 704.1 858 45.8
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 5.0e-200 702.2 890 44.0
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 6.6e-200 701.8 904 44.4
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 8.6e-200 701.4 889 44.9
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 1.9e-199 700.3 887 43.3
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 7.3e-199 698.4 908 46.0
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 1.4e-197 694.1 875 43.5
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 2.3e-197 693.3 879 43.2
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 6.8e-197 691.8 917 43.5
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 1.7e-195 687.2 871 43.5
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 2.9e-195 686.4 865 43.4
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 2.4e-194 683.3 874 44.6
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 3.5e-193 679.5 871 43.1
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 6.0e-193 678.7 875 44.2
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 1.0e-192 677.9 875 43.0
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.3e-192 677.6 889 43.5
ECA232G3855 Erigeron canadensis HOM05D002270 ORTHO05D002866 3.0e-192 676.4 883 43.1
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 6.6e-192 675.2 916 44.1
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 7.3e-191 671.8 875 42.2
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 7.3e-191 671.8 882 42.6
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 5.2e-189 665.6 882 41.8
VMungo0464G0518 Vigna mungo HOM05D002270 ORTHO05D002866 1.5e-188 664.1 860 44.0
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 6.4e-187 658.7 869 41.7
SHI16816 Sapria himalayana HOM05D002270 ORTHO05D002866 8.6e-184 648.3 853 43.7
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 9.5e-183 644.8 884 43.3
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 3.4e-180 636.3 889 40.2
TPR.G9775 Trifolium pratense HOM05D002270 ORTHO05D002866 6.0e-177 625.5 813 44.3
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 7.3e-175 618.6 911 40.1
COL.COLO4_12568 Corchorus olitorius HOM05D002270 ORTHO05D002866 8.9e-173 611.7 668 48.2
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 9.3e-170 601.7 890 40.0
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 3.9e-168 596.3 1011 36.6
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 1.1e-165 588.2 888 39.2
Sp5g22050 Schrenkiella parvula HOM05D002270 ORTHO05D002866 3.1e-165 586.6 779 42.2
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 7.3e-159 565.5 893 39.5
Nitab4.5_0003025g0020 Nicotiana tabacum HOM05D002270 ORTHO05D002866 2.9e-147 526.9 614 46.6
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 4.8e-134 483.0 850 36.7
VMungo0331G1298 Vigna mungo HOM05D002270 ORTHO05D002866 6.5e-123 446.0 532 46.2
CDE12G0087 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 1.8e-109 401.4 560 42.9
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 4.4e-103 380.2 570 39.5
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 6.5e-99 366.3 527 41.2
Cpa.g.sc30.10 Carica papaya HOM05D002270 ORTHO05D002866 1.0e-83 315.8 333 45.9
QL93p0356_0058 Quercus lobata HOM05D002270 ORTHO05D002866 3.3e-82 310.8 331 50.5
SEGI_14766 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 9.5e-82 309.3 627 31.6
QL01p054541 Quercus lobata HOM05D002270 ORTHO05D002866 1.6e-81 308.5 371 47.7
C05p38600 Brassica napus HOM05D002270 ORTHO05D016129 1.1e-77 295.8 574 34.0
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 8.9e-64 249.6 981 26.1
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 3.2e-61 241.1 927 26.4
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 1.9e-53 215.3 983 23.7
Ah.08g216550 Amaranthus hybridus HOM05D002270 ORTHO05D002866 1.1e-50 206.1 244 45.9
TPR.G27589 Trifolium pratense HOM05D002270 ORTHO05D016129 3.6e-49 201.1 206 49.5
TPR.G29949 Trifolium pratense HOM05D002270 ORTHO05D002866 9.0e-48 196.4 258 45.0
BolC5t32598H Brassica oleracea HOM05D002270 ORTHO05D016129 5.8e-47 193.7 249 42.6
CBR_g741 Chara braunii HOM05D002270 ORTHO05D002866 7.9e-44 183.3 671 26.2
Psat1g148840 Pisum sativum HOM05D002270 ORTHO05D012184 6.2e-41 173.7 180 50.6
C05p38590 Brassica napus HOM05D002270 ORTHO05D002866 1.5e-39 169.1 207 44.9
QL03p018747 Quercus lobata HOM05D002270 ORTHO05D002866 2.2e-38 165.2 186 48.9
Cpa.g.sc30.6 Carica papaya HOM05D002270 ORTHO05D002866 2.5e-34 151.8 157 51.6
BolC5t32599H Brassica oleracea HOM05D002270 ORTHO05D002866 1.5e-31 142.5 266 35.0
VMungo0366G0001 Vigna mungo HOM05D002270 ORTHO05D002866 4.5e-31 141.0 316 31.0
Glyma.19G039050 Glycine max HOM05D002270 ORTHO05D016129 1.2e-28 132.9 132 52.3
vmacro22216 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 7.9e-28 130.2 157 49.0
MBI15_g37229_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D016129 1.6e-25 122.5 79 67.1
Lsat_1_v5_gn_9_82220 Lactuca sativa HOM05D002270 ORTHO05D002866 1.4e-24 119.4 183 42.6
SEGI_22741 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 2.4e-24 118.6 189 38.6
Cpa.g.sc30.8 Carica papaya HOM05D002270 ORTHO05D002866 2.0e-23 115.5 126 52.4
SEGI_33198 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 2.0e-23 115.5 156 42.9
MBI18_g29805_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D016129 2.7e-12 78.6 64 50.0
SalBow4G2096 Salvia bowleyana HOM05D002270 ORTHO05D004964 1.1e-10 73.2 157 31.8
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.5e-10 72.8 88 47.7
MBI18_g43595_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D016129 1.5e-10 72.8 58 51.7
Psat4g103760 Pisum sativum HOM05D001026 ORTHO05D020973 4.4e-10 71.2 60 51.7
MBI05_g22669_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D016129 7.4e-10 70.5 59 50.8
VMungo0464G1105 Vigna mungo HOM05D002270 ORTHO05D002866 4.1e-08 64.7 42 71.4


User provided reference genes

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