Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1014 Trochodendron aralioides HOM05D004351 ORTHO05D005196 2.4e-66 255.4 128 100.0
TAR633G2420 Trochodendron aralioides HOM05D004351 ORTHO05D005196 2.5e-39 165.6 109 78.0
Nn7g36761 Nelumbo nucifera HOM05D004351 ORTHO05D005196 9.7e-28 127.1 113 66.4
Actinidia06976 Actinidia chinensis HOM05D004351 ORTHO05D005196 2.0e-25 119.4 97 66.0
Dinv36161 Davidia involucrata HOM05D004351 ORTHO05D005196 2.2e-24 115.9 97 64.9
CSS0023003 Camellia sinensis var. sinensis HOM05D004351 ORTHO05D005196 1.9e-23 112.8 97 62.9
Hma1.2p1_0460F.1_g157460 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 5.5e-23 111.3 92 66.3
Actinidia24469 Actinidia chinensis HOM05D004351 ORTHO05D005196 7.2e-23 110.9 97 63.9
QL05p016402 Quercus lobata HOM05D004351 ORTHO05D005196 2.7e-22 109.0 95 64.2
RcHm_v2.0_Chr5g0050371 Rosa chinensis HOM05D004351 ORTHO05D005196 2.7e-22 109.0 95 64.2
GSVIVG01037327001 Vitis vinifera HOM05D004351 ORTHO05D005196 2.7e-22 109.0 96 64.6
Duzib168G2208 Durio zibethinus HOM05D004351 ORTHO05D005196 4.7e-22 108.2 85 68.2
Dinv15025 Davidia involucrata HOM05D004351 ORTHO05D005196 1.4e-21 106.7 99 61.6
Migut.D00673 Erythranthe guttata HOM05D004351 ORTHO05D005196 1.4e-21 106.7 105 55.2
Rhsim13G0210300 Rhododendron simsii HOM05D004351 ORTHO05D005196 1.4e-21 106.7 95 62.1
Haze_23254 Corylus avellana HOM05D004351 ORTHO05D005196 4.0e-21 105.1 85 67.1
Thecc.09G247500 Theobroma cacao HOM05D004351 ORTHO05D005196 4.0e-21 105.1 89 67.4
Lj2C622G21 Lonicera japonica HOM05D004351 ORTHO05D005196 5.2e-21 104.8 81 69.1
Cfa009891 Carpinus fangiana HOM05D004351 ORTHO05D005196 6.7e-21 104.4 86 66.3
PGR119G2369 Punica granatum HOM05D004351 ORTHO05D005196 8.8e-21 104.0 87 67.8
Ciclev10014772m.g Citrus clementina HOM05D004351 ORTHO05D005196 1.1e-20 103.6 99 61.6
Prupe.4G264000 Prunus persica HOM05D004351 ORTHO05D005196 1.1e-20 103.6 89 64.0
AL6G22990 Arabidopsis lyrata HOM05D004351 ORTHO05D005196 3.3e-20 102.1 87 64.4
Prupe.4G264100 Prunus persica HOM05D004351 ORTHO05D005196 4.4e-20 101.7 88 64.8
TAR636G0959 Trochodendron aralioides HOM05D004351 ORTHO05D005196 4.4e-20 101.7 110 61.8
PSO339G1418 Papaver somniferum HOM05D004351 ORTHO05D005196 9.7e-20 100.5 63 79.4
Eucgr.J00682 Eucalyptus grandis HOM05D004351 ORTHO05D005196 1.7e-19 99.8 100 59.0
QL01p016827 Quercus lobata HOM05D004351 ORTHO05D005196 1.7e-19 99.8 71 71.8
ClCG02G022760 Citrullus lanatus HOM05D004351 ORTHO05D005196 2.8e-19 99.0 83 65.1
COL.COLO4_24484 Corchorus olitorius HOM05D004351 ORTHO05D005196 2.8e-19 99.0 82 64.6
Manes.02G136500 Manihot esculenta HOM05D004351 ORTHO05D005196 2.8e-19 99.0 92 60.9
AUR62006553 Chenopodium quinoa HOM05D004351 ORTHO05D005196 3.7e-19 98.6 90 58.9
Lalb_Chr17g0347771 Lupinus albus HOM05D004351 ORTHO05D005196 3.7e-19 98.6 93 58.1
VMungo0647G2253 Vigna mungo HOM05D004351 ORTHO05D005196 4.8e-19 98.2 88 55.7
MELO3C014554.2 Cucumis melo HOM05D004351 ORTHO05D005196 8.2e-19 97.4 110 54.5
Potri.001G273400 Populus trichocarpa HOM05D004351 ORTHO05D005196 8.2e-19 97.4 84 63.1
Rhsim13G0207700 Rhododendron simsii HOM05D004351 ORTHO05D005196 8.2e-19 97.4 67 73.1
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 1.1e-18 97.1 84 64.3
Potri.009G067700 Populus trichocarpa HOM05D004351 ORTHO05D005196 1.1e-18 97.1 80 66.2
Atru.chr3.3000 Acer truncatum HOM05D004351 ORTHO05D005196 1.4e-18 96.7 85 67.1
Sabra09G0050700 Salix brachista HOM05D004351 ORTHO05D005196 1.4e-18 96.7 84 64.3
Aa31LG3G15030 Aethionema arabicum HOM05D004351 ORTHO05D005196 1.8e-18 96.3 85 67.1
LjContig00564g0013946 Lotus japonicus HOM05D004351 ORTHO05D005196 1.8e-18 96.3 70 67.1
CiPaw.13G149200 Carya illinoinensis HOM05D004351 ORTHO05D005196 2.4e-18 95.9 98 58.2
CiPaw.14G111600 Carya illinoinensis HOM05D004351 ORTHO05D005196 2.4e-18 95.9 98 56.1
SGA_v2.0_scaffold8G04539 Striga asiatica HOM05D004351 ORTHO05D005196 2.4e-18 95.9 85 60.0
CARHR200920 Cardamine hirsuta HOM05D004351 ORTHO05D005196 3.1e-18 95.5 87 60.9
FAN21G2561 Fragaria x ananassa HOM05D004351 ORTHO05D005196 4.1e-18 95.1 94 59.6
CANSAT80G2609 Cannabis sativa HOM05D004351 ORTHO05D005196 5.3e-18 94.7 90 57.8
Gohir.D07G123400 Gossypium hirsutum HOM05D004351 ORTHO05D005196 5.3e-18 94.7 88 59.1
Gorai.001G133200 Gossypium raimondii HOM05D004351 ORTHO05D005196 5.3e-18 94.7 88 59.1
Lj2A623G23 Lonicera japonica HOM05D004351 ORTHO05D005196 5.3e-18 94.7 68 72.1
PGR119G0622 Punica granatum HOM05D004351 ORTHO05D005196 5.3e-18 94.7 97 55.7
TPR.G16412 Trifolium pratense HOM05D004351 ORTHO05D005196 7.0e-18 94.4 71 70.4
AT5G12200 Arabidopsis thaliana HOM05D004351 ORTHO05D005196 9.1e-18 94.0 87 59.8
A10p25600 Brassica napus HOM05D004351 ORTHO05D005196 9.1e-18 94.0 86 61.6
MD03G1164800 Malus domestica HOM05D004351 ORTHO05D005196 9.1e-18 94.0 93 62.4
Hund21970 Selenicereus undatus HOM05D004351 ORTHO05D005196 9.1e-18 94.0 93 55.9
Solyc11g064920.2 Solanum lycopersicum HOM05D004351 ORTHO05D005196 9.1e-18 94.0 98 56.1
Sopen11g024720 Solanum pennellii HOM05D004351 ORTHO05D005196 9.1e-18 94.0 87 60.9
CsaV3_6G038890 Cucumis sativus L. HOM05D004351 ORTHO05D005196 1.2e-17 93.6 83 62.7
Phvul.006G204400 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 1.2e-17 93.6 85 61.2
Sp6g31440 Schrenkiella parvula HOM05D004351 ORTHO05D005196 1.6e-17 93.2 91 59.3
Ah.06g194690 Amaranthus hybridus HOM05D004351 ORTHO05D005196 2.0e-17 92.8 91 56.0
Thhalv10013212m.g Eutrema salsugineum HOM05D004351 ORTHO05D005196 2.0e-17 92.8 90 58.9
Nitab4.5_0009266g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 2.0e-17 92.8 90 58.9
VMungo0540G1132 Vigna mungo HOM05D004351 ORTHO05D005196 2.0e-17 92.8 88 61.4
Aqoxy2G00403 Aquilegia oxysepala HOM05D004351 ORTHO05D005196 2.6e-17 92.4 91 59.3
Glyma.02G278600 Glycine max HOM05D004351 ORTHO05D005196 2.6e-17 92.4 91 53.8
Medtr5g089280 Medicago truncatula HOM05D004351 ORTHO05D005196 4.5e-17 91.7 72 68.1
BraA10t44627Z Brassica rapa HOM05D004351 ORTHO05D005196 5.9e-17 91.3 84 61.9
Ca_06202_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 5.9e-17 91.3 81 64.2
Ca_06205_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 5.9e-17 91.3 81 64.2
Glyma.15G055500 Glycine max HOM05D004351 ORTHO05D005196 5.9e-17 91.3 83 57.8
FvH4_3g27770 Fragaria vesca HOM05D004351 ORTHO05D005196 7.7e-17 90.9 92 58.7
arahy.Tifrunner.gnm1.ann1.3AG2SN Arachis hypogaea HOM05D004351 ORTHO05D005196 1.0e-16 90.5 92 54.3
CDE09G1005 Ceratophyllum demersum HOM05D004351 ORTHO05D005196 1.0e-16 90.5 62 71.0
Psat6g063400 Pisum sativum HOM05D013666 ORTHO05D015141 1.0e-16 90.5 67 71.6
THA.LOC104811202 Tarenaya hassleriana HOM05D004351 ORTHO05D005196 1.0e-16 90.5 94 54.3
arahy.Tifrunner.gnm1.ann1.A6ZB5M Arachis hypogaea HOM05D004351 ORTHO05D005196 1.3e-16 90.1 92 54.3
Cc00_g05700 Coffea canephora HOM05D004351 ORTHO05D005196 1.3e-16 90.1 81 61.7
Medtr5g089200 Medicago truncatula HOM05D004351 ORTHO05D005196 1.3e-16 90.1 86 60.5
C09p64690 Brassica napus HOM05D004351 ORTHO05D005196 1.7e-16 89.7 84 61.9
Psat0s6670g0080 Pisum sativum HOM05D004351 ORTHO05D005196 1.7e-16 89.7 67 71.6
SalBow6G0501 Salvia bowleyana HOM05D004351 ORTHO05D005196 1.7e-16 89.7 84 53.6
TWI31G0625 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 1.7e-16 89.7 93 59.1
Cfa009892 Carpinus fangiana HOM05D004351 ORTHO05D005196 2.2e-16 89.4 86 61.6
Glyma.14G036000 Glycine max HOM05D004351 ORTHO05D005196 3.8e-16 88.6 91 52.7
LjContig00564g0010016 Lotus japonicus HOM05D004351 ORTHO05D005196 3.8e-16 88.6 85 60.0
Psat0s4007g0120 Pisum sativum HOM05D004351 ORTHO05D005196 3.8e-16 88.6 66 72.7
LjContig00564g0001423 Lotus japonicus HOM05D004351 ORTHO05D005196 5.0e-16 88.2 84 61.9
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 6.5e-16 87.8 97 51.5
Lsat_1_v5_gn_3_110020 Lactuca sativa HOM05D004351 ORTHO05D005196 6.5e-16 87.8 78 61.5
MSTRG.18468 Avicennia marina HOM05D004351 ORTHO05D005196 1.1e-15 87.0 98 50.0
BcaNung06879 Brassica carinata HOM05D004351 ORTHO05D005196 1.1e-15 87.0 96 57.3
Carub.0006s1070 Capsella rubella HOM05D004351 ORTHO05D005196 1.1e-15 87.0 79 60.8
Cpa.g.sc34.180 Carica papaya HOM05D004351 ORTHO05D005196 1.1e-15 87.0 88 55.7
DCAR_023830 Daucus carota HOM05D004351 ORTHO05D005196 1.5e-15 86.7 69 62.3
Gohir.A07G119100 Gossypium hirsutum HOM05D004351 ORTHO05D005196 1.5e-15 86.7 92 53.3
TPR.G16392 Trifolium pratense HOM05D004351 ORTHO05D005196 1.5e-15 86.7 89 53.9
Glyma.08G177502 Glycine max HOM05D004351 ORTHO05D005196 2.5e-15 85.9 80 60.0
TWI79G1476 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 2.5e-15 85.9 85 60.0
CAN.G468.6 Capsicum annuum HOM05D004351 ORTHO05D005196 4.2e-15 85.1 83 59.0
Oeu013460.1 Olea europaea HOM05D004351 ORTHO05D005196 7.2e-15 84.3 67 64.2
Nitab4.5_0006764g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 1.6e-14 83.2 101 52.5
Psat2g020840 Pisum sativum HOM05D004351 ORTHO05D005196 1.6e-14 83.2 80 56.2
MBI13_g09228_MAGBIO Magnolia biondii HOM05D004351 ORTHO05D005196 2.7e-14 82.4 105 50.5
Sed0012563 Sechium edule HOM05D004351 ORTHO05D005196 6.1e-14 81.3 88 51.1
Sc09g0001080 Simmondsia chinensis HOM05D004351 ORTHO05D005196 6.1e-14 81.3 85 57.6
Cc00_g05720 Coffea canephora HOM05D004351 ORTHO05D005196 1.4e-13 80.1 81 53.1
HanXRQChr13g0418801 Helianthus annuus HOM05D004351 ORTHO05D005196 1.4e-13 80.1 77 54.5
Sed0017489 Sechium edule HOM05D004351 ORTHO05D005196 1.4e-13 80.1 88 50.0
unitig_62.g23874 Utricularia gibba HOM05D004351 ORTHO05D005196 1.8e-13 79.7 88 46.6
ATR1096G054 Amborella trichopoda HOM05D004351 ORTHO05D005196 2.3e-13 79.3 61 65.6
Peaxi162Scf00004g04314 Petunia axillaris HOM05D004351 ORTHO05D005196 2.3e-13 79.3 66 65.2
Phvul.008G202200 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 3.0e-13 79.0 49 73.5
Gohir.A08G010200 Gossypium hirsutum HOM05D004351 ORTHO05D005196 5.2e-13 78.2 96 52.1
TPR.G16403 Trifolium pratense HOM05D004351 ORTHO05D005196 6.8e-13 77.8 72 58.3
FAN11G3899 Fragaria x ananassa HOM05D004351 ORTHO05D005196 2.0e-12 76.3 92 54.3
HPP92_018205 Vanilla planifolia HOM05D004351 ORTHO05D005196 2.0e-12 76.3 84 51.2
MBI13_g08984_MAGBIO Magnolia biondii HOM05D004351 ORTHO05D005196 4.4e-12 75.1 71 59.2
Gohir.D08G020300 Gossypium hirsutum HOM05D004351 ORTHO05D005196 1.3e-11 73.6 96 50.0
SEGI_39462 Sequoiadendron giganteum HOM05D004351 ORTHO05D005196 6.3e-11 71.2 47 76.6
EL10Ac4g10103 Beta vulgaris HOM05D004351 ORTHO05D005196 8.3e-11 70.9 94 47.9
Zm00001eb150370 Zea mays HOM05D004351 ORTHO05D005196 4.5e-09 65.1 67 53.7
Eucgr.J00683 Eucalyptus grandis HOM05D004351 ORTHO05D005196 3.8e-08 62.0 58 55.2
Os01g0807900 Oryza sativa ssp. japonica HOM05D004351 ORTHO05D005196 6.5e-08 61.2 99 41.4
SMO351G0214 Selaginella moellendorffii HOM05D004351 ORTHO05D005196 1.1e-07 60.5 47 68.1
Mapoly0086s0068 Marchantia polymorpha HOM05D004351 ORTHO05D005196 5.5e-07 58.2 81 45.7


User provided reference genes

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