Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0016 Trochodendron aralioides HOM05D008044 ORTHO05D010106 3.5e-91 338.2 162 100.0
Dinv35361 Davidia involucrata HOM05D008044 ORTHO05D010106 2.0e-62 242.7 164 74.4
Lalb_Chr23g0271711 Lupinus albus HOM05D008044 ORTHO05D010106 1.7e-61 239.6 162 72.2
GSVIVG01038604001 Vitis vinifera HOM05D008044 ORTHO05D010106 1.7e-61 239.6 164 73.2
CsaV3_3G019660 Cucumis sativus L. HOM05D008044 ORTHO05D010106 3.8e-61 238.4 164 71.3
Dinv29244 Davidia involucrata HOM05D008044 ORTHO05D010106 4.9e-61 238.0 163 70.6
MELO3C019381.2 Cucumis melo HOM05D008044 ORTHO05D010106 1.1e-60 236.9 164 71.3
Aqoxy5G02418 Aquilegia oxysepala HOM05D008044 ORTHO05D010106 4.2e-60 235.0 162 71.0
CiPaw.06G043900 Carya illinoinensis HOM05D008044 ORTHO05D010106 4.2e-60 235.0 163 72.4
Medtr3g092020 Medicago truncatula HOM05D008044 ORTHO05D010106 4.2e-60 235.0 163 69.9
PSO063G1947 Papaver somniferum HOM05D008044 ORTHO05D010106 4.2e-60 235.0 163 71.2
arahy.Tifrunner.gnm1.ann1.QU8WMY Arachis hypogaea HOM05D008044 ORTHO05D010106 7.1e-60 234.2 166 71.1
Glyma.04G232600 Glycine max HOM05D008044 ORTHO05D010106 2.7e-59 232.3 166 69.3
Manes.01G037300 Manihot esculenta HOM05D008044 ORTHO05D010106 3.5e-59 231.9 162 70.4
Sed0010771 Sechium edule HOM05D008044 ORTHO05D010106 3.5e-59 231.9 164 68.3
TPR.G33642 Trifolium pratense HOM05D008044 ORTHO05D010106 3.5e-59 231.9 166 68.1
arahy.Tifrunner.gnm1.ann1.4AVA7A Arachis hypogaea HOM05D008044 ORTHO05D010106 1.0e-58 230.3 166 69.9
QL09p007646 Quercus lobata HOM05D008044 ORTHO05D010106 1.1e-57 226.9 194 63.9
Lj1g0025539 Lotus japonicus HOM05D008044 ORTHO05D010106 5.7e-57 224.6 167 65.9
Glyma.06G132400 Glycine max HOM05D008044 ORTHO05D010106 1.3e-56 223.4 166 66.3
Atru.chr12.2313 Acer truncatum HOM05D008044 ORTHO05D010106 1.6e-56 223.0 166 69.3
Sabra15G0006200 Salix brachista HOM05D002361 ORTHO05D002843 2.8e-56 222.2 161 69.6
Thecc.03G204500 Theobroma cacao HOM05D008044 ORTHO05D010106 8.2e-56 220.7 164 67.7
MBI04_g11918_MAGBIO Magnolia biondii HOM05D008044 ORTHO05D010106 1.4e-55 219.9 186 60.8
AUR62035573 Chenopodium quinoa HOM05D008044 ORTHO05D010106 1.5e-54 216.5 163 67.5
Psat5g074880 Pisum sativum HOM05D008044 ORTHO05D010106 1.5e-54 216.5 163 66.9
AUR62006056 Chenopodium quinoa HOM05D008044 ORTHO05D010106 3.4e-54 215.3 163 66.9
Duzib205G1586 Durio zibethinus HOM05D008044 ORTHO05D010106 5.9e-54 214.5 164 68.3
Gorai.003G122500 Gossypium raimondii HOM05D008044 ORTHO05D010106 1.0e-53 213.8 164 66.5
Gohir.D03G116200 Gossypium hirsutum HOM05D008044 ORTHO05D010106 1.3e-53 213.4 164 66.5
CSS0007407 Camellia sinensis var. sinensis HOM05D008044 ORTHO05D010106 2.2e-53 212.6 162 68.5
Cfa016194 Carpinus fangiana HOM05D008044 ORTHO05D010106 2.2e-53 212.6 163 71.2
Migut.F00176 Erythranthe guttata HOM05D008044 ORTHO05D010106 5.0e-53 211.5 162 64.8
Gohir.A03G051500 Gossypium hirsutum HOM05D008044 ORTHO05D010106 5.0e-53 211.5 164 65.9
Phvul.009G048200 Phaseolus vulgaris HOM05D008044 ORTHO05D010106 5.0e-53 211.5 160 66.2
Eucgr.A01433 Eucalyptus grandis HOM05D008044 ORTHO05D010106 1.1e-52 210.3 161 65.8
CANSAT21G1192 Cannabis sativa HOM05D008044 ORTHO05D010106 1.9e-52 209.5 162 66.0
DCAR_020347 Daucus carota HOM05D008044 ORTHO05D010106 7.2e-52 207.6 162 64.2
Ciclev10022664m.g Citrus clementina HOM05D008044 ORTHO05D010106 2.1e-51 206.1 163 66.3
Nitab4.5_0008197g0010 Nicotiana tabacum HOM05D008044 ORTHO05D010106 3.9e-50 201.8 162 62.3
Hund11636 Selenicereus undatus HOM05D008044 ORTHO05D010106 5.1e-50 201.4 167 64.1
Solyc03g082670.3 Solanum lycopersicum HOM05D008044 ORTHO05D010106 1.9e-49 199.5 162 63.0
MSTRG.8632 Avicennia marina HOM05D008044 ORTHO05D010106 4.3e-49 198.4 162 64.8
PGSC0003DMG400018537 Solanum tuberosum HOM05D008044 ORTHO05D010106 4.3e-49 198.4 162 62.3
Lsat_1_v5_gn_2_135221 Lactuca sativa HOM05D008044 ORTHO05D010106 7.4e-49 197.6 164 61.6
ATR0620G028 Amborella trichopoda HOM05D008044 ORTHO05D010106 1.3e-48 196.8 166 60.2
CAN.G481.61 Capsicum annuum HOM05D008044 ORTHO05D010106 1.6e-48 196.4 163 62.6
ClCG05G009120 Citrullus lanatus HOM05D008044 ORTHO05D010106 1.6e-48 196.4 139 68.3
SGA_v2.0_scaffold44G16829 Striga asiatica HOM05D008044 ORTHO05D010106 4.8e-48 194.9 162 61.1
CiPaw.05G200900 Carya illinoinensis HOM05D008044 ORTHO05D010106 2.4e-47 192.6 163 63.8
Cc02_g01150 Coffea canephora HOM05D008044 ORTHO05D010106 9.0e-47 190.7 163 62.0
Ca_16735_v3 Cicer arietinum L. HOM05D008044 ORTHO05D010106 3.4e-46 188.7 133 70.7
PSO782G0454 Papaver somniferum HOM05D008044 ORTHO05D010106 1.7e-45 186.4 132 72.0
Sc25g0000980 Simmondsia chinensis HOM05D008044 ORTHO05D010106 2.2e-45 186.0 167 58.7
HanXRQChr04g0100441 Helianthus annuus HOM05D008044 ORTHO05D010106 2.9e-45 185.7 163 57.7
PGR042G2636 Punica granatum HOM05D008044 ORTHO05D010106 1.1e-44 183.7 165 61.8
Actinidia08675 Actinidia chinensis HOM05D008044 ORTHO05D010106 1.4e-44 183.3 132 68.2
Haze_00261 Corylus avellana HOM05D008044 ORTHO05D010106 1.4e-44 183.3 135 71.9
Oeu037043.1 Olea europaea HOM05D001626 ORTHO05D010106 6.1e-43 177.9 155 57.4
EL10Ac3g05235 Beta vulgaris HOM05D008044 ORTHO05D010106 1.0e-42 177.2 138 64.5
Zm00001eb187590 Zea mays HOM05D008044 ORTHO05D010106 1.0e-42 177.2 157 58.6
SalBow4G0010 Salvia bowleyana HOM05D008044 ORTHO05D010106 5.1e-42 174.9 168 56.5
Hma1.2p1_0512F.1_g169310 Hydrangea macrophylla HOM05D008044 ORTHO05D010106 5.7e-41 171.4 130 67.7
SEGI_00721 Sequoiadendron giganteum HOM05D008044 ORTHO05D010106 2.8e-40 169.1 177 49.7
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 6.9e-39 164.5 148 60.8
SGA_v2.0_scaffold18G08440 Striga asiatica HOM05D008044 ORTHO05D010106 2.0e-38 162.9 164 53.7
Nitab4.5_0010367g0020 Nicotiana tabacum HOM05D008044 ORTHO05D010106 6.5e-37 157.9 139 58.3
Sopen03g022430 Solanum pennellii HOM05D008044 ORTHO05D010106 1.4e-34 150.2 130 60.8
Ah.07g205140 Amaranthus hybridus HOM05D008044 ORTHO05D010106 5.1e-34 148.3 163 51.5
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 1.3e-32 143.7 131 58.8
Peaxi162Scf00740g00427 Petunia axillaris HOM05D008044 ORTHO05D010106 1.1e-31 140.6 162 48.1
CDE02G3408 Ceratophyllum demersum HOM05D008044 ORTHO05D010106 7.2e-28 127.9 105 57.1
Zm00001eb421680 Zea mays HOM05D001260 ORTHO05D010106 2.7e-27 125.9 94 62.8
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 4.7e-27 125.2 86 67.4
Mapoly0007s0051 Marchantia polymorpha HOM05D008044 ORTHO05D010106 1.8e-23 113.2 174 39.7
Nn1g00365 Nelumbo nucifera HOM05D008044 ORTHO05D010106 5.3e-23 111.7 81 69.1
Os02g0686500 Oryza sativa ssp. japonica HOM05D008044 ORTHO05D010106 9.1e-23 110.9 80 63.8
AagrBONN_evm.TU.Sc2ySwM_117.1515 Anthoceros agrestis HOM05D008044 ORTHO05D010106 1.6e-22 110.2 188 34.0
Lsat_1_v5_gn_9_14140 Lactuca sativa HOM05D008044 ORTHO05D010106 2.0e-22 109.8 149 45.0
ECA238G1983 Erigeron canadensis HOM05D008044 ORTHO05D010106 6.5e-13 78.2 82 52.4
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 4.9e-08 62.0 97 38.1
Haze_26954 Corylus avellana HOM05D068281 ORTHO05D043697 2.7e-06 56.2 60 48.3
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 7.7e-06 54.7 95 32.6


User provided reference genes

Program Settings