Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G2460 Trochodendron aralioides HOM05D000568 ORTHO05D000628 3.6e-64 248.1 121 100.0
EL10Ac4g09976 Beta vulgaris HOM05D000568 ORTHO05D000628 2.0e-27 125.9 101 59.4
TAR362G0496 Trochodendron aralioides HOM05D000568 ORTHO05D000628 5.9e-27 124.4 148 50.7
Aqoxy2G04063 Aquilegia oxysepala HOM05D000568 ORTHO05D000628 1.6e-24 116.3 154 46.8
Dinv29110 Davidia involucrata HOM05D000568 ORTHO05D000628 6.8e-23 110.9 148 45.3
MBI11_g07421_MAGBIO Magnolia biondii HOM05D000568 ORTHO05D000628 3.4e-22 108.6 151 43.7
PSO017G3594 Papaver somniferum HOM05D000568 ORTHO05D000628 2.9e-21 105.5 149 41.6
CSS0035731 Camellia sinensis var. sinensis HOM05D000568 ORTHO05D000628 3.7e-21 105.1 148 43.2
CiPaw.07G079600 Carya illinoinensis HOM05D000568 ORTHO05D000628 3.7e-21 105.1 148 45.3
Dinv06978 Davidia involucrata HOM05D000568 ORTHO05D000628 3.7e-21 105.1 148 42.6
Cfa006270 Carpinus fangiana HOM05D000568 ORTHO05D000628 6.4e-21 104.4 148 44.6
Actinidia03829 Actinidia chinensis HOM05D000568 ORTHO05D000628 1.1e-20 103.6 148 43.2
Atru.chr12.1796 Acer truncatum HOM05D000568 ORTHO05D000628 1.9e-20 102.8 148 44.6
Haze_04544 Corylus avellana HOM05D000568 ORTHO05D000628 2.4e-20 102.4 148 43.9
PSO675G2685 Papaver somniferum HOM05D000568 ORTHO05D000628 3.2e-20 102.1 149 40.3
Hma1.2p1_0123F.1_g057910 Hydrangea macrophylla HOM05D000568 ORTHO05D000628 5.4e-20 101.3 148 40.5
Manes.08G104100 Manihot esculenta HOM05D000568 ORTHO05D000628 1.6e-19 99.8 148 42.6
CiPaw.08G115800 Carya illinoinensis HOM05D000568 ORTHO05D000628 2.7e-19 99.0 147 44.2
QL01p048758 Quercus lobata HOM05D000568 ORTHO05D000628 3.5e-19 98.6 147 42.2
CSS0012695 Camellia sinensis var. sinensis HOM05D000568 ORTHO05D000628 6.0e-19 97.8 149 41.6
Potri.019G053200 Populus trichocarpa HOM05D000568 ORTHO05D000628 1.0e-18 97.1 148 42.6
Sabra13G0077100 Salix brachista HOM05D000568 ORTHO05D000628 3.0e-18 95.5 151 43.0
Nitab4.5_0001653g0090 Nicotiana tabacum HOM05D000568 ORTHO05D000628 5.0e-18 94.7 148 39.2
Nitab4.5_0001308g0180 Nicotiana tabacum HOM05D000568 ORTHO05D000628 6.6e-18 94.4 152 40.8
Peaxi162Scf00344g01114 Petunia axillaris HOM05D000568 ORTHO05D000628 8.6e-18 94.0 148 39.2
Glyma.09G251200 Glycine max HOM05D000568 ORTHO05D000628 1.1e-17 93.6 148 40.5
Phvul.008G054800 Phaseolus vulgaris HOM05D000568 ORTHO05D000628 1.1e-17 93.6 148 40.5
Potri.013G086800 Populus trichocarpa HOM05D000568 ORTHO05D000628 1.1e-17 93.6 148 41.2
Sabra19G0062700 Salix brachista HOM05D000568 ORTHO05D000628 1.1e-17 93.6 148 41.9
VMungo1383G1432 Vigna mungo HOM05D000568 ORTHO05D000628 1.1e-17 93.6 148 40.5
Ciclev10011741m.g Citrus clementina HOM05D000568 ORTHO05D000628 1.5e-17 93.2 148 42.6
Cpa.g.sc39.3 Carica papaya HOM05D000568 ORTHO05D000628 1.9e-17 92.8 147 42.2
RcHm_v2.0_Chr3g0447961 Rosa chinensis HOM05D000568 ORTHO05D000628 1.9e-17 92.8 147 40.8
Solyc11g008900.2 Solanum lycopersicum HOM05D000568 ORTHO05D000628 1.9e-17 92.8 148 37.8
Sopen11g004680 Solanum pennellii HOM05D000568 ORTHO05D000628 1.9e-17 92.8 148 37.8
FvH4_6g00570 Fragaria vesca HOM05D000568 ORTHO05D000628 2.5e-17 92.4 147 40.1
FAN14G5758 Fragaria x ananassa HOM05D000568 ORTHO05D000628 2.5e-17 92.4 147 40.1
ATR0561G241 Amborella trichopoda HOM05D000568 ORTHO05D000628 3.3e-17 92.0 149 40.9
MD04G1244100 Malus domestica HOM05D000568 ORTHO05D000628 3.3e-17 92.0 147 40.1
Glyma.18G241300 Glycine max HOM05D000568 ORTHO05D000628 5.6e-17 91.3 148 39.9
Nitab4.5_0011656g0010 Nicotiana tabacum HOM05D000568 ORTHO05D000628 5.6e-17 91.3 148 37.8
Nitab4.5_0002233g0030 Nicotiana tabacum HOM05D000568 ORTHO05D000628 7.3e-17 90.9 152 39.5
Oeu040497.1 Olea europaea HOM05D000568 ORTHO05D000628 7.3e-17 90.9 74 60.8
Ca_07974_v3 Cicer arietinum L. HOM05D000568 ORTHO05D000628 9.5e-17 90.5 148 40.5
arahy.Tifrunner.gnm1.ann1.MSPK9F Arachis hypogaea HOM05D000568 ORTHO05D000628 1.2e-16 90.1 148 39.9
arahy.Tifrunner.gnm1.ann1.ZG36KZ Arachis hypogaea HOM05D000568 ORTHO05D000628 1.2e-16 90.1 148 39.9
PGSC0003DMG400016236 Solanum tuberosum HOM05D000568 ORTHO05D000628 1.6e-16 89.7 148 37.2
Thecc.05G200400 Theobroma cacao HOM05D000568 ORTHO05D000628 2.8e-16 89.0 148 39.2
CANSAT54G1162 Cannabis sativa HOM05D000568 ORTHO05D000628 3.6e-16 88.6 143 40.6
CAN.G1177.12 Capsicum annuum HOM05D000568 ORTHO05D000628 3.6e-16 88.6 149 38.3
Prupe.6G360600 Prunus persica HOM05D000568 ORTHO05D000628 3.6e-16 88.6 147 38.8
COL.COLO4_27387 Corchorus olitorius HOM05D000568 ORTHO05D000628 6.2e-16 87.8 148 38.5
MELO3C010064.2 Cucumis melo HOM05D000568 ORTHO05D000628 6.2e-16 87.8 148 39.2
FAN05G2012 Fragaria x ananassa HOM05D000568 ORTHO05D000628 6.2e-16 87.8 147 38.8
Rhsim09G0129700 Rhododendron simsii HOM05D000568 ORTHO05D000628 6.2e-16 87.8 148 39.2
TPR.G30345 Trifolium pratense HOM05D000568 ORTHO05D000628 1.1e-15 87.0 148 39.9
ClCG03G010840 Citrullus lanatus HOM05D000568 ORTHO05D000628 1.4e-15 86.7 148 37.2
Glyma.10G170800 Glycine max HOM05D000568 ORTHO05D000628 1.4e-15 86.7 148 39.2
CsaV3_1G044580 Cucumis sativus L. HOM05D000568 ORTHO05D000628 1.8e-15 86.3 148 38.5
Sed0011474 Sechium edule HOM05D000568 ORTHO05D000628 1.8e-15 86.3 149 38.3
Phvul.007G118500 Phaseolus vulgaris HOM05D000568 ORTHO05D000628 2.3e-15 85.9 148 38.5
TWI36G0920 Tripterygium wilfordii HOM05D000568 ORTHO05D000628 3.1e-15 85.5 164 39.6
vmacro10408 Vaccinium macrocarpon HOM05D000568 ORTHO05D000628 4.0e-15 85.1 149 39.6
Lalb_Chr02g0149441 Lupinus albus HOM05D000568 ORTHO05D000628 5.2e-15 84.7 148 39.9
VMungo0720G0170 Vigna mungo HOM05D000568 ORTHO05D000628 5.2e-15 84.7 148 38.5
FAN02G1199 Fragaria x ananassa HOM05D000568 ORTHO05D000628 6.8e-15 84.3 147 38.1
PGR119G1524 Punica granatum HOM05D000568 ORTHO05D000628 6.8e-15 84.3 148 38.5
Medtr7g079840 Medicago truncatula HOM05D000568 ORTHO05D000628 8.9e-15 84.0 148 39.2
Psat3g103720 Pisum sativum HOM05D000568 ORTHO05D000628 1.5e-14 83.2 139 41.7
Lalb_Chr21g0311441 Lupinus albus HOM05D000568 ORTHO05D000628 2.0e-14 82.8 148 37.8
Cc09_g03550 Coffea canephora HOM05D000568 ORTHO05D000628 2.6e-14 82.4 147 38.8
Glyma.20G219100 Glycine max HOM05D000568 ORTHO05D000628 4.4e-14 81.6 145 38.6
MD12G1259900 Malus domestica HOM05D000568 ORTHO05D000628 4.4e-14 81.6 148 37.8
Gohir.A05G391200 Gossypium hirsutum HOM05D000568 ORTHO05D000628 5.8e-14 81.3 148 36.5
Gohir.A08G224800 Gossypium hirsutum HOM05D000568 ORTHO05D000628 5.8e-14 81.3 148 36.5
Lj5g0010452 Lotus japonicus HOM05D000568 ORTHO05D000628 5.8e-14 81.3 145 37.9
Lj8A196T47 Lonicera japonica HOM05D000568 ORTHO05D000628 1.7e-13 79.7 152 38.2
Lj6A671T65 Lonicera japonica HOM05D000568 ORTHO05D000628 4.9e-13 78.2 62 59.7
Migut.F01877 Erythranthe guttata HOM05D000568 ORTHO05D000628 6.4e-13 77.8 151 34.4
Gohir.D13G159100 Gossypium hirsutum HOM05D000568 ORTHO05D000628 6.4e-13 77.8 148 37.2
Gorai.004G261700 Gossypium raimondii HOM05D000568 ORTHO05D000628 6.4e-13 77.8 148 35.8
Gorai.013G179800 Gossypium raimondii HOM05D000568 ORTHO05D000628 6.4e-13 77.8 148 37.2
Hund07338 Selenicereus undatus HOM05D000568 ORTHO05D000628 6.4e-13 77.8 152 34.2
Duzib128G0444 Durio zibethinus HOM05D000568 ORTHO05D000628 8.3e-13 77.4 148 35.8
Gohir.D04G026000 Gossypium hirsutum HOM05D000568 ORTHO05D000628 8.3e-13 77.4 148 35.8
Gohir.D08G245200 Gossypium hirsutum HOM05D000568 ORTHO05D000628 8.3e-13 77.4 148 35.8
Gorai.012G028600 Gossypium raimondii HOM05D000568 ORTHO05D000628 8.3e-13 77.4 148 35.8
vmacro08112 Vaccinium macrocarpon HOM05D000568 ORTHO05D000628 1.1e-12 77.0 95 45.3
Actinidia40246 Actinidia chinensis HOM05D000568 ORTHO05D000628 1.4e-12 76.6 63 58.7
TWI75G1052 Tripterygium wilfordii HOM05D000568 ORTHO05D000628 1.4e-12 76.6 147 36.1
Rhsim04G0218900 Rhododendron simsii HOM05D000568 ORTHO05D000628 2.4e-12 75.9 61 59.0
HPP92_011783 Vanilla planifolia HOM05D000568 ORTHO05D000628 2.4e-12 75.9 145 35.9
DCAR_031600 Daucus carota HOM05D000568 ORTHO05D000628 3.2e-12 75.5 148 31.8
Nn1g09782 Nelumbo nucifera HOM05D000568 ORTHO05D000628 3.2e-12 75.5 126 37.3
Peaxi162Scf00253g00721 Petunia axillaris HOM05D000568 ORTHO05D000628 4.1e-12 75.1 149 35.6
Sed0013686 Sechium edule HOM05D000568 ORTHO05D000628 4.1e-12 75.1 147 34.7
AUR62000319 Chenopodium quinoa HOM05D000568 ORTHO05D000628 7.1e-12 74.3 151 34.4
AUR62006665 Chenopodium quinoa HOM05D000568 ORTHO05D000628 7.1e-12 74.3 151 34.4
Gohir.A13G154400 Gossypium hirsutum HOM05D000568 ORTHO05D000628 1.6e-11 73.2 148 37.2
Hma1.2p1_0698F.1_g205389 Hydrangea macrophylla HOM05D000568 ORTHO05D000628 1.6e-11 73.2 62 54.8
Hma1.2p1_2251F.1_g318090 Hydrangea macrophylla HOM05D000568 ORTHO05D000628 1.6e-11 73.2 62 54.8
Oeu044778.1 Olea europaea HOM05D000568 ORTHO05D000628 2.1e-11 72.8 61 57.4
FAN07G1518 Fragaria x ananassa HOM05D000568 ORTHO05D000628 2.7e-11 72.4 86 47.7
SGA_v2.0_scaffold599G53122 Striga asiatica HOM05D000568 ORTHO05D000628 6.0e-11 71.2 75 49.3
MSTRG.8215 Avicennia marina HOM05D000568 ORTHO05D000628 7.8e-11 70.9 149 32.9
SalBow6G1599 Salvia bowleyana HOM05D000568 ORTHO05D000628 7.8e-11 70.9 151 33.8
Glyma.13G217000 Glycine max HOM05D000568 ORTHO05D000628 1.0e-10 70.5 63 52.4
Sabra08G0155300 Salix brachista HOM05D000568 ORTHO05D000628 1.0e-10 70.5 90 46.7
Actinidia00046 Actinidia chinensis HOM05D000568 ORTHO05D000628 1.3e-10 70.1 97 41.2
Ah.04g158860 Amaranthus hybridus HOM05D000568 ORTHO05D000628 2.3e-10 69.3 149 33.6
Eucgr.B01407 Eucalyptus grandis HOM05D000568 ORTHO05D000628 3.0e-10 68.9 141 38.3
Glyma.15G095500 Glycine max HOM05D000568 ORTHO05D000628 3.0e-10 68.9 72 48.6
Psat1g190000 Pisum sativum HOM05D000568 ORTHO05D000628 3.0e-10 68.9 85 47.1
Ca_00555_v3 Cicer arietinum L. HOM05D000568 ORTHO05D000628 5.1e-10 68.2 63 52.4
FAN17G0266 Fragaria x ananassa HOM05D000568 ORTHO05D000628 5.1e-10 68.2 85 45.9
Medtr2g019740 Medicago truncatula HOM05D000568 ORTHO05D000628 1.5e-09 66.6 76 48.7
TPR.G35517 Trifolium pratense HOM05D000568 ORTHO05D000628 1.9e-09 66.2 66 50.0
Lj1g0006041 Lotus japonicus HOM05D000568 ORTHO05D000628 3.3e-09 65.5 142 35.9
Hund21897 Selenicereus undatus HOM05D000568 ORTHO05D000628 3.3e-09 65.5 154 33.8
Sc09g0001510 Simmondsia chinensis HOM05D000568 ORTHO05D000628 5.6e-09 64.7 147 33.3
Lalb_Chr07g0177611 Lupinus albus HOM05D000568 ORTHO05D000628 7.3e-09 64.3 62 48.4
HanXRQChr17g0559161 Helianthus annuus HOM05D000568 ORTHO05D000628 9.5e-09 63.9 148 30.4
PGR031G3440 Punica granatum HOM05D000568 ORTHO05D000628 9.5e-09 63.9 162 34.6
Haze_04844 Corylus avellana HOM05D000568 ORTHO05D000628 1.2e-08 63.5 93 41.9
Phvul.006G163300 Phaseolus vulgaris HOM05D000568 ORTHO05D000628 1.2e-08 63.5 76 44.7
Ah.06g195520 Amaranthus hybridus HOM05D000568 ORTHO05D000628 2.1e-08 62.8 146 33.6
MBI19_g47701_MAGBIO Magnolia biondii HOM05D000568 ORTHO05D000628 2.8e-08 62.4 39 66.7
TPR.G40101 Trifolium pratense HOM05D001236 ORTHO05D001090 4.7e-08 61.6 44 61.4
CAN.G1090.20 Capsicum annuum HOM05D000002 ORTHO05D000001 6.2e-08 61.2 93 35.5
Gohir.A11G116700 Gossypium hirsutum HOM05D000568 ORTHO05D000628 6.2e-08 61.2 63 52.4
TAR636G0488 Trochodendron aralioides HOM05D000568 ORTHO05D000628 6.2e-08 61.2 109 40.4
VMungo0540G0868 Vigna mungo HOM05D000568 ORTHO05D000628 6.2e-08 61.2 63 47.6
FAN24G0913 Fragaria x ananassa HOM05D000568 ORTHO05D000628 1.1e-07 60.5 64 51.6
unitig_749.g13505 Utricularia gibba HOM05D000568 ORTHO05D000628 1.4e-07 60.1 144 30.6
CBR_g5575 Chara braunii HOM05D000568 ORTHO05D005559 1.8e-07 59.7 45 57.8
CAN.G1591.5 Capsicum annuum HOM05D000011 ORTHO05D000018 2.3e-07 59.3 53 49.1
A01p11410 Brassica napus HOM05D000005 ORTHO05D011295 4.0e-07 58.5 113 32.7
THA.LOC104802944 Tarenaya hassleriana HOM05D000568 ORTHO05D000628 4.0e-07 58.5 150 32.0
ECA238G1103 Erigeron canadensis HOM05D000568 ORTHO05D000628 5.2e-07 58.2 147 29.9
CAN.G256.19 Capsicum annuum HOM05D000568 ORTHO05D018879 6.8e-07 57.8 54 57.4
CDE02G0366 Ceratophyllum demersum HOM05D000568 ORTHO05D000628 6.8e-07 57.8 141 29.8
Lsat_1_v5_gn_7_95260 Lactuca sativa HOM05D000568 ORTHO05D000628 6.8e-07 57.8 34 58.8
CDE09G1328 Ceratophyllum demersum HOM05D000568 ORTHO05D000628 1.2e-06 57.0 141 29.1
Zm00001eb169920 Zea mays HOM05D000568 ORTHO05D000628 1.2e-06 57.0 149 26.2
Lj2A1187G54 Lonicera japonica HOM05D000568 ORTHO05D000628 1.5e-06 56.6 53 47.2
Oeu062053.1 Olea europaea HOM05D000568 ORTHO05D000628 2.0e-06 56.2 123 31.7
TPR.G14647 Trifolium pratense HOM05D000568 ORTHO05D000628 2.0e-06 56.2 135 33.3
HPP92_025324 Vanilla planifolia HOM05D015678 ORTHO05D013939 2.0e-06 56.2 29 69.0
Os11g0472000 Oryza sativa ssp. japonica HOM05D000568 ORTHO05D000628 4.4e-06 55.1 149 28.2
BcaNung01775 Brassica carinata HOM05D000005 ORTHO05D011295 5.8e-06 54.7 113 30.1


User provided reference genes

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