Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 0.0e+00 1271.5 735 100.0
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 3.4e-210 735.7 746 65.4
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 1.0e-209 734.2 743 68.4
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 8.4e-209 731.1 744 64.9
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 2.3e-206 723.0 738 66.5
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 3.0e-206 722.6 740 65.7
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 4.3e-205 718.8 740 65.4
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 7.4e-205 718.0 751 65.2
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.6e-204 716.8 737 64.6
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 2.2e-204 716.5 604 71.7
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 1.1e-203 714.1 733 64.1
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 9.0e-203 711.1 737 65.0
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.4e-200 703.7 741 64.9
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 1.9e-200 703.4 524 69.5
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 7.2e-200 701.4 732 64.8
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 9.3e-200 701.0 603 70.5
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 1.0e-198 697.6 525 69.5
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 2.3e-198 696.4 600 69.5
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 8.8e-198 694.5 606 70.1
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 1.5e-197 693.7 529 69.4
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 1.5e-197 693.7 761 62.9
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 2.5e-197 693.0 590 71.0
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.7e-196 690.3 389 90.0
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 4.1e-195 685.6 521 72.4
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 9.1e-195 684.5 600 70.3
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 1.5e-194 683.7 486 72.6
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 3.4e-194 682.6 524 69.8
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 3.4e-194 682.6 526 69.6
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 4.5e-194 682.2 520 71.2
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 7.7e-194 681.4 520 71.2
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 3.8e-193 679.1 520 71.0
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 1.1e-192 677.6 743 61.8
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 2.5e-192 676.4 516 70.9
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 2.5e-192 676.4 531 69.9
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 5.5e-192 675.2 536 69.2
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 2.1e-191 673.3 516 70.3
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 2.7e-191 672.9 749 62.9
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 2.7e-191 672.9 520 70.6
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 3.6e-191 672.5 509 72.1
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 3.0e-190 669.5 607 69.0
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 5.1e-190 668.7 733 62.2
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 2.0e-189 666.8 510 69.0
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 2.6e-189 666.4 531 69.9
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 4.4e-189 665.6 515 70.3
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 1.7e-188 663.7 531 69.5
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 8.2e-188 661.4 520 67.1
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 8.2e-188 661.4 510 68.6
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 1.1e-187 661.0 529 67.5
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 2.6e-186 656.4 535 68.2
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 6.5e-185 651.7 526 68.8
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 6.5e-185 651.7 742 60.0
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 6.5e-185 651.7 519 70.3
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 1.1e-184 651.0 510 67.8
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.9e-184 650.2 743 61.2
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 5.5e-184 648.7 475 73.3
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 7.2e-184 648.3 455 73.4
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 1.2e-183 647.5 495 70.1
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 4.7e-183 645.6 787 58.1
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 4.7e-183 645.6 534 67.0
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 8.0e-183 644.8 449 72.6
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 3.3e-181 639.4 549 65.4
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 9.1e-179 631.3 525 66.9
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 1.6e-178 630.6 491 69.9
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 1.3e-177 627.5 406 76.8
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 8.5e-177 624.8 525 64.8
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 3.2e-176 622.9 418 74.9
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 5.5e-176 622.1 503 68.2
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 7.2e-176 621.7 514 66.0
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 3.0e-174 616.3 520 65.2
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 4.0e-174 615.9 527 65.7
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 8.8e-174 614.8 772 57.9
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.5e-173 614.0 742 58.6
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 2.6e-173 613.2 454 69.8
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 5.7e-173 612.1 502 66.7
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 4.8e-172 609.0 757 60.2
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 2.0e-170 603.6 745 57.4
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 5.9e-170 602.1 719 57.0
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 5.9e-170 602.1 488 66.8
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 3.8e-169 599.4 510 65.7
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 4.2e-168 595.9 522 63.6
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 2.7e-167 593.2 513 64.1
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 6.1e-167 592.0 510 62.5
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.4e-166 590.9 454 68.5
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 1.8e-166 590.5 601 70.4
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 2.2e-164 583.6 542 65.7
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 2.2e-164 583.6 495 64.8
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 4.8e-164 582.4 419 69.2
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 8.3e-164 581.6 450 67.6
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 9.1e-163 578.2 505 63.0
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 9.1e-163 578.2 440 67.7
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 3.8e-161 572.8 528 59.8
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 8.6e-161 571.6 525 63.4
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 4.2e-160 569.3 521 61.8
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 3.4e-157 559.7 603 58.9
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 8.3e-156 555.1 454 67.0
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 3.5e-154 549.7 454 64.1
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 2.5e-152 543.5 453 62.0
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 2.8e-151 540.0 497 60.6
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 4.0e-150 536.2 507 59.0
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 6.8e-150 535.4 438 62.8
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 1.2e-149 534.6 538 55.4
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 5.8e-149 532.3 471 63.3
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 8.3e-148 528.5 481 59.7
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 5.4e-147 525.8 507 59.4
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 9.2e-147 525.0 470 58.9
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 1.6e-146 524.2 395 65.8
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 1.6e-146 524.2 425 64.5
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 4.3e-144 516.2 522 57.7
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.5e-141 507.7 445 64.7
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 2.6e-141 506.9 496 59.1
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 6.4e-132 475.7 568 63.4
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 3.6e-127 459.9 437 60.4
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 2.4e-126 457.2 326 69.3
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.2e-125 454.9 383 63.7
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 2.2e-116 424.1 493 49.3
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 4.8e-111 406.4 354 62.4
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 9.0e-110 402.1 423 52.5
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 1.6e-106 391.3 428 50.9
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 6.0e-106 389.4 372 56.5
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 7.4e-104 382.5 347 57.9
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 8.2e-95 352.4 305 66.6
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 6.7e-89 332.8 212 75.0
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 3.1e-86 323.9 451 47.9
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 2.0e-85 321.2 400 51.2
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 2.4e-78 297.7 477 57.4
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 6.5e-76 289.7 368 45.7
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 1.0e-73 282.3 206 69.9
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 3.7e-71 273.9 448 41.3
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 1.4e-67 261.9 195 67.7
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.6e-53 215.3 195 58.5
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 9.8e-48 196.1 201 53.7
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.2e-42 179.1 523 29.1
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.6e-42 178.7 356 57.9
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 5.2e-41 173.7 166 56.6
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 3.4e-40 171.0 179 62.6
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 3.4e-32 144.4 125 58.4
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 7.5e-32 143.3 125 58.4
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 6.4e-31 140.2 116 67.2
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 4.3e-27 127.5 386 28.0
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 9.5e-27 126.3 95 66.3
TAR369G0235 Trochodendron aralioides HOM05D005013 ORTHO05D006005 4.7e-26 124.0 159 62.3
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 5.4e-22 110.5 358 26.3
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 2.3e-20 105.1 87 60.9
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 3.6e-18 97.8 358 43.6
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 1.3e-15 89.4 122 57.4
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 4.9e-15 87.4 161 36.0
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 4.9e-15 87.4 124 44.4
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 3.2e-14 84.7 94 48.9
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 8.6e-12 76.6 106 44.3
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 2.5e-11 75.1 115 47.0
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 8.1e-10 70.1 44 75.0
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 2.4e-09 68.6 86 47.7
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 1.7e-07 62.4 47 68.1


User provided reference genes

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