Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 7.8e-226 786.9 441 100.0
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.5e-184 649.0 433 80.8
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.9e-168 596.3 444 74.8
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 7.7e-165 584.3 447 75.2
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 2.1e-162 576.2 456 70.6
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 6.1e-162 574.7 443 74.5
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.4e-161 573.5 443 74.3
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 2.0e-160 569.7 435 72.0
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 3.7e-159 565.5 497 64.0
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 8.5e-156 554.3 445 68.8
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 5.5e-155 551.6 445 68.8
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 5.5e-155 551.6 445 68.8
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 9.4e-155 550.8 444 70.0
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.7e-154 549.3 445 68.5
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.6e-154 548.9 445 68.5
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 5.1e-153 545.0 447 66.7
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 1.1e-152 543.9 445 68.1
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 2.0e-152 543.1 448 67.0
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 7.4e-152 541.2 445 67.4
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.3e-151 540.4 445 67.2
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 4.8e-151 538.5 471 62.4
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 6.3e-151 538.1 450 69.3
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.4e-147 526.9 448 65.4
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.4e-147 526.9 457 68.3
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 1.4e-147 526.9 444 64.6
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 1.6e-146 523.5 442 65.4
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 3.6e-146 522.3 444 64.0
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 1.0e-145 520.8 443 66.8
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 2.3e-145 519.6 447 64.2
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 2.0e-144 516.5 446 70.2
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 5.7e-144 515.0 447 67.6
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 7.4e-144 514.6 449 64.8
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 9.7e-144 514.2 442 67.6
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 1.3e-143 513.8 449 65.0
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 3.7e-143 512.3 449 65.0
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 6.3e-143 511.5 445 63.8
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 1.1e-142 510.8 444 69.1
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 7.0e-142 508.1 446 69.5
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 9.1e-142 507.7 448 63.4
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.6e-141 506.9 445 64.9
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 3.5e-141 505.8 457 66.3
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 5.9e-141 505.0 446 64.1
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 5.9e-141 505.0 446 64.3
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 7.7e-141 504.6 446 64.1
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 1.0e-140 504.2 445 63.4
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 1.7e-140 503.4 444 63.7
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 1.7e-140 503.4 444 62.4
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.7e-140 503.4 448 63.8
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 1.7e-140 503.4 448 65.6
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 2.9e-140 502.7 445 64.0
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 3.8e-140 502.3 446 65.2
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 8.5e-140 501.1 449 66.1
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 2.5e-139 499.6 451 64.5
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 3.2e-139 499.2 445 64.3
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 4.2e-139 498.8 441 66.9
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 2.1e-138 496.5 444 66.7
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 3.6e-138 495.7 441 64.2
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 6.1e-138 495.0 464 64.0
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 8.0e-138 494.6 447 66.2
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.0e-137 494.2 443 66.1
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.0e-137 494.2 443 66.1
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 1.0e-137 494.2 449 61.9
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.8e-137 493.4 441 61.5
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 2.3e-137 493.0 451 62.7
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 3.0e-137 492.7 445 62.5
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 1.5e-136 490.3 495 59.2
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 4.4e-136 488.8 455 60.2
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 7.5e-136 488.0 443 60.9
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 9.7e-136 487.6 441 61.9
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 9.7e-136 487.6 443 66.6
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 4.8e-135 485.3 444 62.2
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 4.8e-135 485.3 448 60.9
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 8.3e-135 484.6 453 61.1
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 9.1e-134 481.1 447 64.0
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 9.1e-134 481.1 441 63.3
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 1.6e-133 480.3 451 64.5
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 3.5e-133 479.2 452 61.3
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 3.5e-133 479.2 459 59.7
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 4.5e-133 478.8 446 63.0
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 5.9e-133 478.4 450 59.8
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 5.0e-132 475.3 448 60.3
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.2e-130 470.7 431 62.2
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 1.6e-130 470.3 444 64.9
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 3.6e-130 469.2 454 57.5
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 1.0e-129 467.6 448 60.0
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 1.8e-129 466.8 443 64.6
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 3.0e-129 466.1 452 58.4
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 1.3e-127 460.7 435 65.3
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.8e-126 456.8 448 62.9
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 1.8e-126 456.8 447 64.2
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 2.0e-125 453.4 472 56.4
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.0e-124 451.1 443 63.9
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 6.6e-124 448.4 464 61.0
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 2.5e-123 446.4 445 63.6
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 3.3e-123 446.0 500 53.0
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 4.0e-121 439.1 435 63.2
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 6.8e-121 438.3 442 56.6
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 8.9e-121 438.0 448 62.9
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.2e-120 437.6 442 62.2
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 1.5e-120 437.2 454 56.4
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 4.4e-120 435.6 454 56.6
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 1.7e-119 433.7 459 56.2
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 4.9e-119 432.2 459 56.2
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 5.4e-118 428.7 443 63.0
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 5.4e-118 428.7 446 58.7
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 5.9e-117 425.2 434 62.9
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 1.1e-115 421.0 457 55.1
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 2.0e-112 410.2 449 59.0
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 2.2e-111 406.8 447 58.2
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.3e-105 386.7 390 54.9
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 3.4e-104 382.9 380 63.9
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 1.1e-102 377.9 485 49.1
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.2e-101 374.4 318 64.2
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 2.3e-97 360.1 383 56.4
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 8.9e-97 358.2 446 54.0
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.9e-95 353.2 377 60.2
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 3.7e-95 352.8 320 66.9
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 1.6e-93 347.4 432 51.2
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 1.6e-85 320.9 443 49.2
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 6.0e-85 318.9 487 48.9
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 7.8e-85 318.5 512 44.3
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 1.9e-78 297.4 315 59.7
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 1.1e-70 271.6 318 52.5
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 4.3e-67 259.6 446 46.0
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 4.8e-66 256.1 215 67.4
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 4.8e-66 256.1 446 45.7
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 2.5e-59 233.8 169 68.6
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.3e-58 231.5 137 82.5
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.2e-50 204.1 359 44.6
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 1.4e-49 201.4 262 46.2
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 1.4e-49 201.4 262 46.2
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 3.8e-47 193.4 345 40.6
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 7.7e-40 169.1 195 53.3
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.8e-33 147.9 83 85.5
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 2.2e-31 141.0 128 53.9
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 6.5e-31 139.4 325 38.5
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 1.6e-29 134.8 74 82.4
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 6.1e-29 132.9 181 50.8
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 1.4e-28 131.7 69 88.4
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.8e-28 131.3 253 42.3
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 4.4e-27 126.7 120 55.0
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.3e-26 125.2 91 73.6
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 6.3e-26 122.9 68 82.4
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 2.0e-24 117.9 69 82.6
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 3.5e-24 117.1 142 46.5
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 3.5e-24 117.1 145 45.5
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 3.8e-23 113.6 85 69.4
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 1.6e-16 91.7 139 46.8
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 5.2e-12 76.6 62 64.5
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 2.6e-11 74.3 520 24.6
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 5.7e-11 73.2 90 53.3
Cre02.g105287 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D008521 5.0e-07 60.1 69 42.0
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 4.3e-06 57.0 69 49.3
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 9.5e-06 55.8 61 44.3
Os09g0281600 Oryza sativa ssp. japonica HOM05D004785 ORTHO05D005704 9.5e-06 55.8 124 37.9


User provided reference genes

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