Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 4.7e-302 1040.4 533 100.0
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 4.8e-238 827.8 469 91.5
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 2.1e-169 599.7 462 67.3
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 2.7e-164 582.8 422 69.9
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.5e-162 577.0 422 69.4
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 9.9e-159 564.3 398 72.1
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 8.7e-155 551.2 420 66.9
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 4.3e-154 548.9 425 64.5
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 1.3e-150 537.3 422 65.6
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 3.0e-147 526.2 424 62.3
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 1.1e-146 524.2 452 59.3
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 1.1e-146 524.2 421 62.7
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 2.3e-139 500.0 451 59.0
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 6.7e-139 498.4 423 60.3
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 8.2e-137 491.5 423 59.6
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 8.2e-137 491.5 457 58.2
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 5.3e-136 488.8 418 57.2
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 5.3e-136 488.8 417 60.0
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 9.0e-136 488.0 424 61.1
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 2.6e-135 486.5 477 54.9
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 3.2e-133 479.6 428 58.2
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 7.9e-132 474.9 419 57.3
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 3.9e-131 472.6 438 58.9
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.1e-131 472.2 419 57.0
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 8.7e-131 471.5 456 55.9
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 1.1e-130 471.1 412 59.7
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 1.1e-130 471.1 419 56.8
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 1.5e-130 470.7 421 56.8
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 5.7e-130 468.8 419 57.8
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 4.8e-129 465.7 453 55.6
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 5.3e-128 462.2 422 55.7
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.5e-127 460.7 419 56.3
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.4e-127 459.5 419 56.1
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 5.9e-127 458.8 422 56.2
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 7.7e-127 458.4 414 56.3
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 2.2e-126 456.8 421 57.0
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 3.8e-126 456.1 422 57.6
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 6.5e-126 455.3 424 55.4
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 5.5e-125 452.2 438 53.7
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 2.5e-122 443.4 422 55.0
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 5.7e-122 442.2 387 57.4
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 9.7e-122 441.4 435 54.9
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.8e-120 437.2 418 54.5
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 3.1e-120 436.4 442 52.0
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 4.5e-119 432.6 420 55.7
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 7.7e-119 431.8 417 57.1
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 6.5e-118 428.7 408 56.6
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 8.5e-118 428.3 490 48.0
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 1.4e-117 427.6 389 58.4
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 4.2e-117 426.0 447 52.3
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 5.5e-117 425.6 389 58.1
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 2.7e-116 423.3 389 57.8
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 2.7e-116 423.3 487 48.3
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 4.8e-113 412.5 303 64.7
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 1.1e-112 411.4 432 52.3
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 1.8e-112 410.6 517 44.3
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 3.1e-112 409.8 419 53.2
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 4.1e-112 409.5 411 52.3
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 5.3e-112 409.1 458 51.5
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 2.6e-111 406.8 467 46.9
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 1.7e-110 404.1 430 50.2
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 1.1e-109 401.4 436 50.9
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 2.1e-108 397.1 445 51.5
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 2.1e-108 397.1 432 52.5
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 5.2e-107 392.5 426 49.1
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.7e-105 386.3 416 51.0
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 1.8e-104 384.0 417 48.9
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 1.2e-103 381.3 392 52.8
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 1.0e-102 378.3 389 53.7
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 1.7e-102 377.5 370 52.4
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.5e-101 373.6 405 51.1
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 3.2e-101 373.2 426 48.8
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 4.2e-101 372.9 469 46.9
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 2.1e-100 370.5 413 49.4
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 8.0e-100 368.6 435 48.5
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 1.0e-99 368.2 395 51.4
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 1.8e-99 367.5 422 48.6
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 2.3e-99 367.1 364 52.7
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 4.4e-98 362.8 398 49.0
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 4.4e-98 362.8 440 46.1
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 4.1e-96 356.3 425 46.1
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 9.1e-96 355.1 413 46.2
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 1.2e-95 354.8 393 44.8
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.7e-94 350.9 415 47.2
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 1.5e-93 347.8 361 48.2
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.7e-92 343.6 411 47.0
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.1e-92 342.4 407 47.2
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.3e-91 340.5 411 46.7
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 3.1e-88 330.1 314 51.9
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 3.5e-87 326.6 450 43.1
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 2.3e-86 323.9 368 48.1
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 5.5e-85 319.3 423 46.3
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 9.5e-85 318.5 414 42.5
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 8.9e-83 312.0 396 46.2
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.0e-82 310.8 447 41.8
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 3.7e-81 306.6 337 49.0
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.4e-80 304.7 431 42.5
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 2.9e-78 297.0 349 46.1
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 6.6e-78 295.8 432 41.4
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 1.5e-74 284.6 397 41.8
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 1.5e-74 284.6 397 41.8
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 7.5e-74 282.3 358 45.0
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 7.5e-74 282.3 358 45.0
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 1.7e-73 281.2 239 58.2
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 8.3e-73 278.9 397 40.8
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 8.3e-73 278.9 397 40.8
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 1.1e-72 278.5 397 40.8
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 3.5e-71 273.5 392 40.1
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 3.5e-71 273.5 318 47.5
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 7.8e-71 272.3 251 54.2
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 1.3e-70 271.6 392 40.3
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 6.6e-70 269.2 278 54.0
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 1.5e-69 268.1 393 41.0
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 1.9e-69 267.7 449 37.9
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 5.6e-69 266.2 300 45.3
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 1.6e-68 264.6 317 48.3
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 1.8e-67 261.2 181 72.9
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 3.1e-67 260.4 393 39.9
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 3.4e-66 256.9 394 38.6
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 4.4e-66 256.5 396 37.6
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 5.8e-66 256.1 406 38.7
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 9.2e-64 248.8 336 43.5
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 4.3e-61 240.0 334 42.2
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 9.5e-61 238.8 440 35.2
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 7.6e-58 229.2 353 38.0
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 8.6e-54 215.7 407 34.9
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 4.6e-47 193.4 455 33.0
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 5.6e-45 186.4 403 29.5
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 6.9e-43 179.5 212 47.6
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 1.3e-41 175.3 338 33.1
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 1.4e-40 171.8 254 37.0
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.9e-40 171.4 161 55.9
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 3.2e-40 170.6 139 59.7
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 9.3e-40 169.1 276 44.9
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 6.6e-38 162.9 207 46.9
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 1.5e-37 161.8 207 46.9
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 8.1e-36 156.0 325 31.4
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 1.8e-35 154.8 134 59.7
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 5.8e-34 149.8 183 48.6
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 5.1e-30 136.7 151 49.7
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 1.9e-29 134.8 176 38.1
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 3.3e-29 134.0 171 50.3
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.9e-24 118.2 125 50.4
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 5.5e-24 116.7 161 39.1
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 1.6e-20 105.1 88 50.0
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 2.4e-19 101.3 96 50.0
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 7.2e-16 89.7 56 71.4
Lj9A422T78 Lonicera japonica HOM05D003469 ORTHO05D029064 1.6e-15 88.6 88 58.0
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.1e-15 88.2 62 69.4
Lsat_1_v5_gn_6_14080 Lactuca sativa HOM05D002718 ORTHO05D004084 5.7e-13 80.1 71 54.9
MD17G1140900 Malus domestica HOM05D003469 ORTHO05D004084 3.7e-12 77.4 83 55.4
QL01p054481 Quercus lobata HOM05D003469 ORTHO05D004084 1.8e-11 75.1 47 70.2
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 4.5e-10 70.5 359 24.0
Medtr4g074700 Medicago truncatula HOM05D003469 ORTHO05D004084 1.3e-09 68.9 96 42.7
TAR362G0148 Trochodendron aralioides HOM05D006141 ORTHO05D007670 2.5e-08 64.7 95 44.2
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 7.2e-08 63.2 297 24.6
arahy.Tifrunner.gnm1.ann1.QWX0VP Arachis hypogaea HOM05D003469 ORTHO05D004084 1.2e-07 62.4 106 35.8
Ciclev10022224m.g Citrus clementina HOM05D006141 ORTHO05D007670 3.6e-07 60.8 90 43.3
SEGI_31377 Sequoiadendron giganteum HOM05D003469 ORTHO05D029064 3.6e-07 60.8 42 64.3
Atru.chr5.866 Acer truncatum HOM05D006141 ORTHO05D007670 4.6e-07 60.5 92 42.4
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.6e-07 60.5 46 58.7
Lj9A422T77 Lonicera japonica HOM05D003469 ORTHO05D004084 7.9e-07 59.7 38 71.1
Nn4g25355 Nelumbo nucifera HOM05D006141 ORTHO05D007670 7.9e-07 59.7 95 41.1
TWI59G0338 Tripterygium wilfordii HOM05D006141 ORTHO05D007670 1.0e-06 59.3 96 39.6
Cfa004908 Carpinus fangiana HOM05D006141 ORTHO05D007670 1.4e-06 58.9 90 42.2
Aqoxy2G02498 Aquilegia oxysepala HOM05D006141 ORTHO05D007670 1.8e-06 58.5 112 38.4
Pp3c11_22970 Physcomitrium patens HOM05D003301 ORTHO05D003665 2.3e-06 58.2 164 23.2
Duzib138G1179 Durio zibethinus HOM05D006141 ORTHO05D007670 3.0e-06 57.8 90 41.1
Gohir.A08G036900 Gossypium hirsutum HOM05D006141 ORTHO05D007670 3.0e-06 57.8 90 41.1
Gohir.D08G047500 Gossypium hirsutum HOM05D006141 ORTHO05D007670 3.0e-06 57.8 90 41.1
Gorai.004G046700 Gossypium raimondii HOM05D006141 ORTHO05D007670 3.0e-06 57.8 90 41.1
VMungo1383G2247 Vigna mungo HOM05D006141 ORTHO05D007670 3.0e-06 57.8 96 36.5
FAN28G2755 Fragaria x ananassa HOM05D006141 ORTHO05D007670 3.9e-06 57.4 103 39.8
GSVIVG01028253001 Vitis vinifera HOM05D006141 ORTHO05D007670 3.9e-06 57.4 90 41.1
ClCG01G007160 Citrullus lanatus HOM05D006141 ORTHO05D007670 5.1e-06 57.0 103 40.8
RcHm_v2.0_Chr3g0485921 Rosa chinensis HOM05D006141 ORTHO05D007670 6.7e-06 56.6 103 39.8
BcaB02g08777 Brassica carinata HOM05D003469 ORTHO05D004084 8.8e-06 56.2 131 35.1
MELO3C005194.2 Cucumis melo HOM05D006141 ORTHO05D007670 8.8e-06 56.2 121 38.8


User provided reference genes

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