Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1509 Trochodendron aralioides HOM05D004826 ORTHO05D006367 1.5e-242 842.4 433 100.0
Dinv34775 Davidia involucrata HOM05D004826 ORTHO05D006367 1.7e-185 652.9 436 77.5
GSVIVG01001175001 Vitis vinifera HOM05D004826 ORTHO05D006367 8.3e-172 607.4 436 71.1
Hma1.2p1_0822F.1_g224300 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 1.1e-171 607.1 427 74.0
Aqoxy5G00445 Aquilegia oxysepala HOM05D004826 ORTHO05D006367 2.1e-167 592.8 434 70.7
PSO832G3843 Papaver somniferum HOM05D004826 ORTHO05D006367 2.6e-165 585.9 436 69.5
Haze_04685 Corylus avellana HOM05D004826 ORTHO05D006367 1.3e-164 583.6 435 70.6
MD11G1282600 Malus domestica HOM05D004826 ORTHO05D006367 4.9e-164 581.6 436 69.7
Actinidia24908 Actinidia chinensis HOM05D004826 ORTHO05D006367 8.3e-164 580.9 436 69.5
PSO210G5512 Papaver somniferum HOM05D004826 ORTHO05D006367 1.4e-163 580.1 435 68.7
TWI75G1621 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 4.1e-163 578.6 435 69.4
Manes.05G079700 Manihot esculenta HOM05D004826 ORTHO05D006367 3.9e-161 572.0 436 69.3
CSS0031998 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 8.6e-161 570.9 437 68.9
COL.COLO4_09064 Corchorus olitorius HOM05D004826 ORTHO05D003095 4.3e-160 568.5 436 67.4
CSS0030159 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 1.2e-159 567.0 437 68.2
RcHm_v2.0_Chr6g0290561 Rosa chinensis HOM05D004826 ORTHO05D006367 2.8e-159 565.8 429 68.8
Lj1A48T56 Lonicera japonica HOM05D004826 ORTHO05D006367 1.4e-158 563.5 442 67.2
Gorai.008G003800 Gossypium raimondii HOM05D004826 ORTHO05D006367 2.3e-158 562.8 436 68.3
Prupe.8G238200 Prunus persica HOM05D004826 ORTHO05D006367 3.1e-158 562.4 436 67.9
Cpa.g.sc2545.1 Carica papaya HOM05D004826 ORTHO05D006367 5.2e-158 561.6 472 64.2
Gohir.A12G004300 Gossypium hirsutum HOM05D004826 ORTHO05D006367 5.2e-158 561.6 436 67.9
Potri.005G211600 Populus trichocarpa HOM05D004826 ORTHO05D006367 6.8e-158 561.2 436 66.7
Gohir.D12G004000 Gossypium hirsutum HOM05D004826 ORTHO05D006367 2.0e-157 559.7 430 68.4
Thecc.01G275300 Theobroma cacao HOM05D004826 ORTHO05D006367 7.5e-157 557.8 434 66.8
Duzib138G1281 Durio zibethinus HOM05D004826 ORTHO05D006367 1.3e-156 557.0 436 66.3
FAN27G1728 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.3e-156 557.0 431 68.4
FAN20G2615 Fragaria x ananassa HOM05D004826 ORTHO05D006367 2.9e-156 555.8 431 68.0
CANSAT25G1434 Cannabis sativa HOM05D004826 ORTHO05D006367 3.7e-156 555.4 436 67.4
FvH4_2g23260 Fragaria vesca HOM05D004826 ORTHO05D006367 3.7e-156 555.4 429 68.5
FAN15G0865 Fragaria x ananassa HOM05D004826 ORTHO05D006367 3.2e-155 552.4 431 67.5
QL12p021024 Quercus lobata HOM05D004826 ORTHO05D006367 1.2e-154 550.4 517 59.0
FAN24G0969 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.6e-154 550.1 429 68.3
Ciclev10020269m.g Citrus clementina HOM05D004826 ORTHO05D006367 3.0e-153 545.8 436 67.2
vmacro14910 Vaccinium macrocarpon HOM05D004826 ORTHO05D006367 2.5e-152 542.7 463 62.6
Oeu025741.1 Olea europaea HOM05D004826 ORTHO05D006367 4.3e-152 542.0 431 67.7
Eucgr.K03351 Eucalyptus grandis HOM05D004826 ORTHO05D006367 6.8e-150 534.6 431 64.7
PGSC0003DMG400005331 Solanum tuberosum HOM05D004826 ORTHO05D006367 8.9e-150 534.3 433 65.8
Rhsim01G0273300 Rhododendron simsii HOM05D004826 ORTHO05D006367 2.6e-149 532.7 440 65.2
Sopen06g003480 Solanum pennellii HOM05D004826 ORTHO05D006367 9.9e-149 530.8 433 66.1
Cc01_g19270 Coffea canephora HOM05D004826 ORTHO05D006367 2.2e-148 529.6 443 63.9
Solyc06g008700.3 Solanum lycopersicum HOM05D004826 ORTHO05D006367 2.2e-148 529.6 433 65.8
THA.LOC104801247 Tarenaya hassleriana HOM05D004826 ORTHO05D006367 3.7e-148 528.9 437 63.6
CsaV3_7G027950 Cucumis sativus L. HOM05D004826 ORTHO05D006367 5.4e-147 525.0 437 64.3
DCAR_002720 Daucus carota HOM05D004826 ORTHO05D006367 2.1e-146 523.1 431 62.6
Glyma.03G155900 Glycine max HOM05D004826 ORTHO05D006367 1.9e-144 516.5 429 65.0
ECA236G2315 Erigeron canadensis HOM05D004826 ORTHO05D006367 2.5e-144 516.2 425 63.8
MELO3C015814.2 Cucumis melo HOM05D004826 ORTHO05D006367 3.3e-144 515.8 437 63.2
Thhalv10007706m.g Eutrema salsugineum HOM05D004826 ORTHO05D006367 4.3e-144 515.4 437 61.8
CDE06G0967 Ceratophyllum demersum HOM05D004826 ORTHO05D006367 5.6e-144 515.0 428 60.3
Sabra05G0161700 Salix brachista HOM05D004826 ORTHO05D006367 5.6e-144 515.0 459 59.7
MD03G1261900 Malus domestica HOM05D004826 ORTHO05D006367 9.5e-144 514.2 438 63.2
arahy.Tifrunner.gnm1.ann1.HM2HLZ Arachis hypogaea HOM05D004826 ORTHO05D006367 2.8e-143 512.7 438 63.9
AT1G03110 Arabidopsis thaliana HOM05D004826 ORTHO05D006367 3.6e-143 512.3 431 61.0
Nn1g02359 Nelumbo nucifera HOM05D004826 ORTHO05D006367 3.6e-143 512.3 305 83.9
Carub.0001s0225 Capsella rubella HOM05D004826 ORTHO05D006367 8.1e-143 511.1 436 60.6
arahy.Tifrunner.gnm1.ann1.ZSCD81 Arachis hypogaea HOM05D004826 ORTHO05D006367 1.1e-142 510.8 447 63.3
Phvul.001G153300 Phaseolus vulgaris HOM05D004826 ORTHO05D006367 1.4e-142 510.4 428 64.0
SalBow4G1440 Salvia bowleyana HOM05D004826 ORTHO05D006367 1.8e-142 510.0 434 63.8
Sp1g02120 Schrenkiella parvula HOM05D004826 ORTHO05D006367 1.8e-142 510.0 434 61.5
Migut.D00320 Erythranthe guttata HOM05D004826 ORTHO05D006367 3.1e-142 509.2 438 62.6
MSTRG.18248 Avicennia marina HOM05D004826 ORTHO05D006367 5.2e-142 508.4 433 63.5
AL1G12580 Arabidopsis lyrata HOM05D004826 ORTHO05D006367 8.9e-142 507.7 435 61.4
VMungo1383G1287 Vigna mungo HOM05D004826 ORTHO05D006367 3.4e-141 505.8 427 63.7
Psat3g063080 Pisum sativum HOM05D004826 ORTHO05D006367 9.9e-141 504.2 430 64.0
ClCG09G007220 Citrullus lanatus HOM05D004826 ORTHO05D006367 1.3e-140 503.8 475 58.7
Ca_08614_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 2.2e-140 503.1 428 64.5
Peaxi162Scf00572g00217 Petunia axillaris HOM05D004826 ORTHO05D006367 2.2e-140 503.1 432 62.7
Glyma.19G158200 Glycine max HOM05D004826 ORTHO05D006367 3.8e-140 502.3 428 63.8
Lj1g0007005 Lotus japonicus HOM05D004826 ORTHO05D006367 2.4e-139 499.6 434 63.8
TPR.G24327 Trifolium pratense HOM05D004826 ORTHO05D006367 1.2e-138 497.3 430 62.8
HanXRQChr04g0118961 Helianthus annuus HOM05D004826 ORTHO05D006367 1.6e-138 496.9 433 61.7
Sc17g0001330 Simmondsia chinensis HOM05D004826 ORTHO05D006367 3.0e-137 492.7 427 61.6
PGR044G1874 Punica granatum HOM05D004826 ORTHO05D006367 1.1e-136 490.7 435 60.7
CARHR002460 Cardamine hirsuta HOM05D004826 ORTHO05D006367 3.3e-136 489.2 424 59.9
EL10Ac5g10541 Beta vulgaris HOM05D004826 ORTHO05D006367 7.3e-136 488.0 451 60.1
Medtr7g095190 Medicago truncatula HOM05D004826 ORTHO05D006367 1.3e-135 487.3 437 61.8
Aa31LG1G9410 Aethionema arabicum HOM05D004826 ORTHO05D006367 1.6e-135 486.9 454 57.0
AUR62032326 Chenopodium quinoa HOM05D004826 ORTHO05D006367 1.2e-133 480.7 440 59.5
BcaC07g42266 Brassica carinata HOM05D004826 ORTHO05D002453 2.6e-133 479.6 431 58.7
A08p37480 Brassica napus HOM05D004826 ORTHO05D006367 2.6e-133 479.6 439 59.7
AUR62028599 Chenopodium quinoa HOM05D004826 ORTHO05D006367 3.4e-133 479.2 438 60.0
Lalb_Chr01g0020091 Lupinus albus HOM05D004826 ORTHO05D006367 3.4e-133 479.2 436 61.0
BraA09t42171Z Brassica rapa HOM05D004826 ORTHO05D002453 2.2e-132 476.5 433 58.9
A09p68350 Brassica napus HOM05D004826 ORTHO05D002453 2.4e-131 473.0 433 58.2
Lsat_1_v5_gn_8_56761 Lactuca sativa HOM05D004826 ORTHO05D006367 3.2e-131 472.6 377 63.9
BraA08t35646Z Brassica rapa HOM05D004826 ORTHO05D006367 2.7e-130 469.5 449 58.1
HPP92_006117 Vanilla planifolia HOM05D004826 ORTHO05D006367 4.6e-130 468.8 433 56.8
C08p00410 Brassica napus HOM05D004826 ORTHO05D006367 7.8e-130 468.0 440 59.3
BolC8t46840H Brassica oleracea HOM05D004826 ORTHO05D006367 6.6e-129 464.9 448 57.8
CiPaw.07G089800 Carya illinoinensis HOM05D004826 ORTHO05D006367 3.3e-128 462.6 335 72.8
Ah.02g110880 Amaranthus hybridus HOM05D004826 ORTHO05D006367 2.8e-127 459.5 410 59.5
Os03g0746800 Oryza sativa ssp. japonica HOM05D004826 ORTHO05D006367 1.4e-126 457.2 437 56.3
BolC8t52808H Brassica oleracea HOM05D004826 ORTHO05D002453 2.9e-124 449.5 431 56.4
C05p01720 Brassica napus HOM05D004826 ORTHO05D006367 5.4e-123 445.3 439 57.2
C08p52920 Brassica napus HOM05D004826 ORTHO05D002453 2.3e-121 439.9 430 56.0
Ca_08622_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 1.3e-119 434.1 398 60.3
Hma1.2p1_0822F.1_g224310 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 1.3e-113 414.1 303 72.9
MBI05_g20783_MAGBIO Magnolia biondii HOM05D004826 ORTHO05D006367 1.1e-107 394.4 431 54.8
Sed0001689 Sechium edule HOM05D004826 ORTHO05D006367 2.3e-105 386.7 350 60.6
Atru.chr5.1473 Acer truncatum HOM05D004826 ORTHO05D006367 1.8e-102 377.1 249 73.5
Zm00001eb215000 Zea mays HOM05D004826 ORTHO05D006367 5.3e-102 375.6 437 49.2
A10p01740 Brassica napus HOM05D004826 ORTHO05D006367 1.9e-99 367.1 437 51.5
unitig_0.g133 Utricularia gibba HOM05D004826 ORTHO05D006367 1.9e-99 367.1 390 52.1
SEGI_35891 Sequoiadendron giganteum HOM05D004826 ORTHO05D006367 4.6e-98 362.5 448 46.2
RcHm_v2.0_Chr6g0290571 Rosa chinensis HOM05D004826 ORTHO05D006367 3.4e-93 346.3 238 70.6
Nitab4.5_0005696g0030 Nicotiana tabacum HOM05D004826 ORTHO05D006367 1.5e-85 320.9 369 51.2
SHI16389 Sapria himalayana HOM05D000105 ORTHO05D000023 3.5e-77 293.1 203 68.5
Mapoly0048s0007 Marchantia polymorpha HOM05D004826 ORTHO05D006367 1.3e-76 291.2 442 40.3
Pp3c3_10370 Physcomitrium patens HOM05D004826 ORTHO05D006367 8.5e-76 288.5 430 41.2
C01p00020 Brassica napus HOM05D004826 ORTHO05D006367 1.1e-75 288.1 374 44.7
BolC1t00008H Brassica oleracea HOM05D004826 ORTHO05D006367 4.2e-75 286.2 374 44.7
SMO358G0471 Selaginella moellendorffii HOM05D004826 ORTHO05D006367 2.7e-74 283.5 448 41.1
BcaNung01310 Brassica carinata HOM05D004826 ORTHO05D006367 1.3e-71 274.6 372 43.3
BraA10t42449Z Brassica rapa HOM05D004826 ORTHO05D006367 7.2e-67 258.8 295 51.9
BcaNung01308 Brassica carinata HOM05D004826 ORTHO05D006367 4.7e-66 256.1 382 40.6
CSS0007905 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 9.1e-62 241.9 157 73.2
CBR_g19915 Chara braunii HOM05D004826 ORTHO05D006367 1.8e-57 227.6 400 37.8
Actinidia21127 Actinidia chinensis HOM05D004826 ORTHO05D006367 6.3e-55 219.2 454 38.3
CSS0022346 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 3.2e-54 216.9 156 68.6
SGA_v2.0_scaffold138G35320 Striga asiatica HOM05D004826 ORTHO05D006367 7.0e-54 215.7 433 34.9
BolC1t00011H Brassica oleracea HOM05D004826 ORTHO05D006367 1.6e-50 204.5 227 49.3
AagrBONN_evm.TU.Sc2ySwM_228.3229 Anthoceros agrestis HOM05D011762 ORTHO05D014803 1.4e-49 201.4 337 39.8
ATR0665G626 Amborella trichopoda HOM05D004826 ORTHO05D006367 1.5e-40 171.4 125 64.8
BolC5t28951H Brassica oleracea HOM05D004826 ORTHO05D006367 6.4e-39 166.0 289 41.2
Nitab4.5_0025955g0010 Nicotiana tabacum HOM05D004826 ORTHO05D006367 2.3e-36 157.5 242 44.6
TAR362G0739 Trochodendron aralioides HOM05D004826 ORTHO05D006367 8.1e-34 149.1 361 35.5
arahy.Tifrunner.gnm1.ann1.QRYF2V Arachis hypogaea HOM05D004826 ORTHO05D006367 1.1e-33 148.7 341 34.9
TWI12G0215 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 5.2e-33 146.4 106 67.0
CiPaw.07G089700 Carya illinoinensis HOM05D004826 ORTHO05D006367 5.8e-32 142.9 100 70.0
Lj1C48G4 Lonicera japonica HOM05D000001 ORTHO05D000003 7.6e-32 142.5 214 45.8
QL12p021035 Quercus lobata HOM05D004826 ORTHO05D006367 2.9e-31 140.6 215 46.5
Hma1.2p1_0822F.1_g224290 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 1.3e-28 131.7 95 67.4
Hund02828 Selenicereus undatus HOM05D004826 ORTHO05D006367 1.1e-27 128.6 127 59.1
Hund27937 Selenicereus undatus HOM05D004826 ORTHO05D006367 1.1e-27 128.6 127 59.1
MCO04G388 Micromonas commoda HOM05D004826 ORTHO05D006367 2.4e-25 120.9 383 28.5
BcaC05g24557 Brassica carinata HOM05D001359 ORTHO05D001200 2.0e-24 117.9 224 40.6
Cre08.g374800 Chlamydomonas reinhardtii HOM05D004826 ORTHO05D006367 5.8e-24 116.3 380 25.0
arahy.Tifrunner.gnm1.ann1.XCP3P1 Arachis hypogaea HOM05D004826 ORTHO05D006367 5.4e-22 109.8 318 30.5
SGA_v2.0_scaffold1G00502 Striga asiatica HOM05D004826 ORTHO05D006367 8.7e-20 102.4 122 51.6
Gorai.005G155300 Gossypium raimondii HOM05D004826 ORTHO05D006367 2.8e-18 97.4 68 63.2
Gohir.D02G138850 Gossypium hirsutum HOM05D004826 ORTHO05D006367 4.8e-18 96.7 68 63.2
COL.COLO4_05144 Corchorus olitorius HOM05D004826 ORTHO05D006367 2.9e-15 87.4 84 53.6
PRCOL_00006778 Prasinoderma coloniale HOM05D004826 ORTHO05D006367 7.1e-14 82.8 280 27.9
SHI16388 Sapria himalayana HOM05D004826 ORTHO05D006367 1.2e-13 82.0 157 41.4
arahy.Tifrunner.gnm1.ann1.DV54YZ Arachis hypogaea HOM05D004826 ORTHO05D006367 3.5e-13 80.5 86 54.7
Sabra02G0041400 Salix brachista HOM05D004826 ORTHO05D006367 6.6e-12 76.3 58 60.3
CDE07G1977 Ceratophyllum demersum HOM05D003852 ORTHO05D003095 1.5e-11 75.1 58 67.2
Oeu040654.1 Olea europaea HOM05D004826 ORTHO05D006367 4.3e-11 73.6 99 46.5
AL1G37940 Arabidopsis lyrata HOM05D000453 ORTHO05D000387 1.2e-08 65.5 181 27.1
Thhalv10007766m.g Eutrema salsugineum HOM05D000453 ORTHO05D000387 2.6e-08 64.3 181 26.0
Lsat_1_v5_gn_3_49560 Lactuca sativa HOM05D000453 ORTHO05D000387 5.8e-08 63.2 188 27.7
AT1G24130 Arabidopsis thaliana HOM05D000453 ORTHO05D000387 7.6e-08 62.8 181 26.0
arahy.Tifrunner.gnm1.ann1.C0LV86 Arachis hypogaea HOM05D000453 ORTHO05D000387 7.6e-08 62.8 189 25.4
BcaB07g32412 Brassica carinata HOM05D000453 ORTHO05D000387 7.6e-08 62.8 184 26.6
Cfa009094 Carpinus fangiana HOM05D000453 ORTHO05D000387 9.9e-08 62.4 215 27.0
PGSC0003DMG400001922 Solanum tuberosum HOM05D000453 ORTHO05D000387 9.9e-08 62.4 187 26.2
BolC5t31025H Brassica oleracea HOM05D000453 ORTHO05D000387 1.3e-07 62.0 184 25.0
Carub.0001s2357 Capsella rubella HOM05D000453 ORTHO05D000387 2.2e-07 61.2 183 25.7
CBR_g34019 Chara braunii HOM05D006665 ORTHO05D008327 2.2e-07 61.2 219 23.3
Solyc04g005020.3 Solanum lycopersicum HOM05D000453 ORTHO05D000387 2.2e-07 61.2 187 26.2
C05p23250 Brassica napus HOM05D000453 ORTHO05D000387 2.9e-07 60.8 181 25.4
Sopen04g001030 Solanum pennellii HOM05D000453 ORTHO05D000387 2.9e-07 60.8 187 26.2
AUR62039424 Chenopodium quinoa HOM05D000453 ORTHO05D000387 3.8e-07 60.5 187 23.5
BraA09t42133Z Brassica rapa HOM05D004826 ORTHO05D006367 4.9e-07 60.1 85 43.5
Aqoxy3G03107 Aquilegia oxysepala HOM05D000453 ORTHO05D000387 6.4e-07 59.7 251 25.5
Sp1g21460 Schrenkiella parvula HOM05D000453 ORTHO05D000387 6.4e-07 59.7 182 24.7
Sc04g0008840 Simmondsia chinensis HOM05D000453 ORTHO05D000387 8.4e-07 59.3 177 25.4
C01p00040 Brassica napus HOM05D004826 ORTHO05D006367 1.4e-06 58.5 137 33.6
Phvul.009G182000 Phaseolus vulgaris HOM05D000453 ORTHO05D000387 1.4e-06 58.5 154 27.3
A09p67980 Brassica napus HOM05D004826 ORTHO05D006367 3.2e-06 57.4 85 42.4
Lalb_Chr16g0382521 Lupinus albus HOM05D000453 ORTHO05D000387 3.2e-06 57.4 182 24.7
Pp3c22_1410 Physcomitrium patens HOM05D000992 ORTHO05D001928 3.2e-06 57.4 187 29.4
Sp2g12920 Schrenkiella parvula HOM05D000992 ORTHO05D001928 3.2e-06 57.4 159 26.4
VMungo1309G1244 Vigna mungo HOM05D000453 ORTHO05D000387 4.2e-06 57.0 156 27.6
Aqoxy3G03109 Aquilegia oxysepala HOM05D000453 ORTHO05D000387 5.5e-06 56.6 182 25.8
Thhalv10021071m.g Eutrema salsugineum HOM05D003006 ORTHO05D003438 7.1e-06 56.2 225 25.8


User provided reference genes

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