Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1367 Trochodendron aralioides HOM05D006587 ORTHO05D008487 6.6e-199 697.2 358 100.0
TAR362G0294 Trochodendron aralioides HOM05D006587 ORTHO05D008487 2.2e-154 549.3 362 79.8
GSVIVG01017920001 Vitis vinifera HOM05D006587 ORTHO05D008487 7.4e-142 507.7 363 71.1
Actinidia23494 Actinidia chinensis HOM05D006587 ORTHO05D008487 9.0e-140 500.7 322 78.0
PGR004G2885 Punica granatum HOM05D006587 ORTHO05D008487 3.8e-138 495.4 319 76.8
CSS0008441 Camellia sinensis var. sinensis HOM05D006587 ORTHO05D008487 5.0e-138 495.0 322 76.4
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 1.6e-136 490.0 339 72.9
Hma1.2p1_0511F.1_g168960 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 4.6e-136 488.4 313 77.0
Manes.03G181700 Manihot esculenta HOM05D006587 ORTHO05D008487 6.7e-135 484.6 316 77.8
Prupe.1G154500 Prunus persica HOM05D006587 ORTHO05D008487 1.5e-134 483.4 352 71.0
MD16G1187700 Malus domestica HOM05D006587 ORTHO05D008487 5.7e-134 481.5 356 69.7
Potri.008G149800 Populus trichocarpa HOM05D006587 ORTHO05D008487 1.3e-133 480.3 316 76.3
MD13G1186800 Malus domestica HOM05D006587 ORTHO05D008487 2.4e-132 476.1 313 75.7
CiPaw.02G094600 Carya illinoinensis HOM05D006587 ORTHO05D008487 4.1e-132 475.3 364 68.1
TWI73G1280 Tripterygium wilfordii HOM05D006587 ORTHO05D008487 5.3e-132 474.9 359 70.2
Actinidia40165 Actinidia chinensis HOM05D006587 ORTHO05D008487 9.1e-132 474.2 376 68.9
CANSAT78G1956 Cannabis sativa HOM05D006587 ORTHO05D008487 9.1e-132 474.2 363 68.9
Sc19g0004360 Simmondsia chinensis HOM05D006587 ORTHO05D008487 1.2e-131 473.8 317 73.5
Atru.chr4.2522 Acer truncatum HOM05D006587 ORTHO05D008487 1.5e-131 473.4 315 74.6
Rhsim04G0204300 Rhododendron simsii HOM05D006587 ORTHO05D008487 5.9e-131 471.5 314 75.2
Thecc.04G226500 Theobroma cacao HOM05D006587 ORTHO05D008487 2.2e-130 469.5 316 73.7
Gohir.A01G023600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 3.2e-129 465.7 313 70.6
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 4.2e-129 465.3 313 74.8
Cc03_g03390 Coffea canephora HOM05D006587 ORTHO05D008487 5.5e-129 464.9 371 67.9
FAN07G2036 Fragaria x ananassa HOM05D006587 ORTHO05D008487 7.2e-129 464.5 359 68.0
THA.LOC104818820 Tarenaya hassleriana HOM05D006587 ORTHO05D008487 9.4e-129 464.2 315 72.1
ECA236G2554 Erigeron canadensis HOM05D006587 ORTHO05D008487 2.1e-128 463.0 310 75.2
MBI17_g12493_MAGBIO Magnolia biondii HOM05D006587 ORTHO05D008487 2.1e-128 463.0 290 77.6
RcHm_v2.0_Chr4g0417131 Rosa chinensis HOM05D006587 ORTHO05D008487 2.7e-128 462.6 360 70.3
PSO302G0285 Papaver somniferum HOM05D006587 ORTHO05D008487 4.7e-128 461.8 359 70.8
MSTRG.24750 Avicennia marina HOM05D006587 ORTHO05D008487 7.9e-128 461.1 311 74.6
PSO170G4636 Papaver somniferum HOM05D006587 ORTHO05D008487 1.0e-127 460.7 359 71.0
Haze_00934 Corylus avellana HOM05D006587 ORTHO05D008487 3.0e-127 459.1 366 68.0
Nitab4.5_0000144g0120 Nicotiana tabacum HOM05D006587 ORTHO05D008487 5.1e-127 458.4 315 71.7
Migut.N00169 Erythranthe guttata HOM05D006587 ORTHO05D008487 8.8e-127 457.6 316 71.8
Gorai.002G024100 Gossypium raimondii HOM05D006587 ORTHO05D008487 8.8e-127 457.6 313 70.0
Eucgr.H03560 Eucalyptus grandis HOM05D006587 ORTHO05D008487 2.6e-126 456.1 373 67.0
Gohir.D01G021600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 4.4e-126 455.3 313 69.3
CAN.G69.11 Capsicum annuum HOM05D006587 ORTHO05D008487 5.7e-126 454.9 350 65.1
Lsat_1_v5_gn_9_80941 Lactuca sativa HOM05D006587 ORTHO05D008487 9.7e-126 454.1 308 75.0
Solyc01g079710.3 Solanum lycopersicum HOM05D006587 ORTHO05D008487 1.7e-125 453.4 345 65.8
Ciclev10005176m.g Citrus clementina HOM05D006587 ORTHO05D008487 2.2e-125 453.0 365 65.5
Sopen01g031480 Solanum pennellii HOM05D006587 ORTHO05D008487 2.8e-125 452.6 345 65.8
MELO3C006549.2 Cucumis melo HOM05D006587 ORTHO05D008487 3.7e-125 452.2 311 72.3
Thhalv10013731m.g Eutrema salsugineum HOM05D006587 ORTHO05D008487 6.3e-125 451.4 314 71.7
ClCG05G005300 Citrullus lanatus HOM05D006587 ORTHO05D008487 1.4e-124 450.3 311 72.7
CsaV3_3G013530 Cucumis sativus L. HOM05D006587 ORTHO05D008487 3.1e-124 449.1 311 72.0
DCAR_002398 Daucus carota HOM05D006587 ORTHO05D008487 3.1e-124 449.1 314 72.3
AT5G19300 Arabidopsis thaliana HOM05D006587 ORTHO05D008487 5.3e-124 448.4 311 71.7
CARHR193670 Cardamine hirsuta HOM05D006587 ORTHO05D008487 6.9e-124 448.0 311 72.0
BcaB08g36587 Brassica carinata HOM05D006587 ORTHO05D008487 2.0e-123 446.4 310 71.0
Glyma.20G143100 Glycine max HOM05D006587 ORTHO05D008487 2.6e-123 446.0 354 65.8
Sp6g25120 Schrenkiella parvula HOM05D006587 ORTHO05D008487 2.6e-123 446.0 311 70.7
Sed0010167 Sechium edule HOM05D006587 ORTHO05D008487 2.6e-123 446.0 347 69.5
Sabra08G0113900 Salix brachista HOM05D006587 ORTHO05D008487 4.5e-123 445.3 296 74.3
Potri.010G091400 Populus trichocarpa HOM05D006587 ORTHO05D008487 5.9e-123 444.9 349 69.1
SalBow5G0644 Salvia bowleyana HOM05D006587 ORTHO05D008487 1.0e-122 444.1 314 71.7
AL6G30780 Arabidopsis lyrata HOM05D006587 ORTHO05D008487 1.3e-122 443.7 311 70.7
Carub.0006s1763 Capsella rubella HOM05D006587 ORTHO05D008487 1.7e-122 443.4 311 70.4
BolC9t58560H Brassica oleracea HOM05D006587 ORTHO05D008487 2.9e-122 442.6 314 69.4
BraA10t44108Z Brassica rapa HOM05D006587 ORTHO05D008487 6.5e-122 441.4 310 70.0
BcaC04g18580 Brassica carinata HOM05D006587 ORTHO05D008487 1.1e-121 440.7 314 69.1
C09p56970 Brassica napus HOM05D006587 ORTHO05D008487 1.1e-121 440.7 314 69.1
HanXRQChr13g0400281 Helianthus annuus HOM05D006587 ORTHO05D008487 1.9e-121 439.9 310 71.9
VMungo0720G0184 Vigna mungo HOM05D006587 ORTHO05D008487 1.9e-121 439.9 354 67.2
A10p20380 Brassica napus HOM05D006587 ORTHO05D008487 4.2e-121 438.7 310 70.0
PGSC0003DMG400008999 Solanum tuberosum HOM05D006587 ORTHO05D008487 5.5e-121 438.3 379 59.9
HPP92_010726 Vanilla planifolia HOM05D006587 ORTHO05D008487 6.1e-120 434.9 319 68.0
Lalb_Chr06g0164781 Lupinus albus HOM05D006587 ORTHO05D008487 8.0e-120 434.5 354 67.5
Ah.13g074000 Amaranthus hybridus HOM05D006587 ORTHO05D008487 1.0e-119 434.1 313 67.7
TPR.G5533 Trifolium pratense HOM05D006587 ORTHO05D008487 1.0e-119 434.1 312 69.9
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 3.0e-119 432.6 366 65.6
Lj5g0006939 Lotus japonicus HOM05D006587 ORTHO05D008487 3.9e-119 432.2 358 65.9
Medtr1g105065 Medicago truncatula HOM05D006587 ORTHO05D008487 3.9e-119 432.2 313 69.6
Ca_10966_v3 Cicer arietinum L. HOM05D006587 ORTHO05D008487 5.2e-119 431.8 350 65.4
Aa31LG11G10390 Aethionema arabicum HOM05D006587 ORTHO05D008487 6.7e-119 431.4 315 68.9
arahy.Tifrunner.gnm1.ann1.HZWC9V Arachis hypogaea HOM05D006587 ORTHO05D008487 1.1e-118 430.6 314 70.4
EL10As3g23313 Beta vulgaris HOM05D006587 ORTHO05D008487 1.5e-118 430.3 368 62.8
arahy.Tifrunner.gnm1.ann1.G9UJER Arachis hypogaea HOM05D006587 ORTHO05D008487 2.6e-118 429.5 314 70.1
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 4.4e-118 428.7 297 72.1
Psat6g209880 Pisum sativum HOM05D006587 ORTHO05D008487 5.7e-118 428.3 357 62.7
Phvul.007G053900 Phaseolus vulgaris HOM05D006587 ORTHO05D008487 7.4e-118 427.9 317 67.5
Aqoxy2G03329 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 9.7e-118 427.6 314 67.8
Hma1.2p1_0511F.1_g168950 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 2.4e-116 422.9 294 70.7
Dinv38415 Davidia involucrata HOM05D006587 ORTHO05D008487 5.3e-116 421.8 299 74.9
Os04g0244500 Oryza sativa ssp. japonica HOM05D006587 ORTHO05D008487 5.3e-116 421.8 308 69.5
Dinv44504 Davidia involucrata HOM05D006587 ORTHO05D008487 2.6e-115 419.5 261 77.0
SGA_v2.0_scaffold10G05110 Striga asiatica HOM05D006587 ORTHO05D008487 2.2e-114 416.4 321 67.3
SalBow5G2730 Salvia bowleyana HOM05D006587 ORTHO05D008487 5.0e-114 415.2 294 71.8
Peaxi162Scf01336g00122 Petunia axillaris HOM05D006587 ORTHO05D008487 3.0e-111 406.0 311 65.9
Nitab4.5_0000180g0030 Nicotiana tabacum HOM05D006587 ORTHO05D008487 3.5e-107 392.5 315 62.5
Cpa.g.sc147.29 Carica papaya HOM05D006587 ORTHO05D008487 5.4e-100 368.6 245 74.3
AUR62043415 Chenopodium quinoa HOM05D006587 ORTHO05D008487 7.0e-100 368.2 272 65.8
Lj3A741G38 Lonicera japonica HOM05D006587 ORTHO05D008487 3.5e-99 365.9 298 66.4
QL06p003535 Quercus lobata HOM05D006587 ORTHO05D008487 1.3e-98 364.0 254 71.7
ATR0626G244 Amborella trichopoda HOM05D006587 ORTHO05D008487 6.1e-96 355.1 266 66.9
Sabra10G0051900 Salix brachista HOM05D006587 ORTHO05D008487 9.2e-92 341.3 308 57.5
Pp3c7_20660 Physcomitrium patens HOM05D006587 ORTHO05D008487 9.5e-89 331.3 310 55.8
SMO364G0578 Selaginella moellendorffii HOM05D006587 ORTHO05D008487 6.1e-88 328.6 310 56.8
unitig_899.g15640 Utricularia gibba HOM05D006587 ORTHO05D008487 9.8e-86 321.2 319 57.7
Mapoly0049s0075 Marchantia polymorpha HOM05D006587 ORTHO05D008487 2.9e-85 319.7 313 51.4
Duzib151G0305 Durio zibethinus HOM05D006587 ORTHO05D008487 1.3e-77 294.3 315 54.0
Aqoxy2G03328 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 2.7e-75 286.6 355 53.5
AUR62038173 Chenopodium quinoa HOM05D006587 ORTHO05D008487 1.6e-72 277.3 289 51.6
PRCOL_00002662 Prasinoderma coloniale HOM05D006587 ORTHO05D008487 3.1e-71 273.1 332 44.9
Zm00001eb373340 Zea mays HOM05D006587 ORTHO05D008487 4.4e-70 269.2 216 65.3
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 4.1e-68 262.7 326 50.0
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 8.6e-66 255.0 248 56.9
FvH4_4g14960 Fragaria vesca HOM05D006587 ORTHO05D008487 3.0e-58 229.9 177 68.9
CDE05G0907 Ceratophyllum demersum HOM05D006587 ORTHO05D008487 6.6e-58 228.8 180 65.0
Oeu040660.1 Olea europaea HOM05D006587 ORTHO05D008487 4.6e-51 206.1 212 57.5
Cfa024389 Carpinus fangiana HOM05D006587 ORTHO05D008487 3.9e-50 203.0 377 37.4
Glyma.10G250600 Glycine max HOM05D006587 ORTHO05D008487 1.5e-46 191.0 165 69.7
Cre16.g670617 Chlamydomonas reinhardtii HOM05D006587 ORTHO05D008487 6.4e-45 185.7 351 34.5
AagrBONN_evm.TU.Sc2ySwM_340.504 Anthoceros agrestis HOM05D006587 ORTHO05D008487 2.4e-44 183.7 190 55.3
COL.COLO4_06205 Corchorus olitorius HOM05D006587 ORTHO05D008487 3.7e-40 169.9 206 49.5
Lalb_Chr02g0144661 Lupinus albus HOM05D006587 ORTHO05D008487 5.8e-38 162.5 150 59.3
QL06p003531 Quercus lobata HOM05D006587 ORTHO05D008487 1.4e-28 131.3 72 84.7
TAR362G0446 Trochodendron aralioides HOM05D006587 ORTHO05D008487 6.3e-16 89.4 89 70.8
Lalb_Chr02g0144651 Lupinus albus HOM05D006587 ORTHO05D008487 5.9e-14 82.8 62 62.9
PSO151G0052 Papaver somniferum HOM05D004736 ORTHO05D030424 1.9e-12 77.8 75 57.3
arahy.Tifrunner.gnm1.ann1.Y836FI Arachis hypogaea HOM05D000158 ORTHO05D000197 3.0e-10 70.5 98 40.8
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 5.1e-10 69.7 103 40.8
Lsat_1_v5_gn_9_31900 Lactuca sativa HOM05D006587 ORTHO05D011576 3.3e-09 67.0 91 42.9
Gorai.004G106600 Gossypium raimondii HOM05D006587 ORTHO05D008487 4.4e-09 66.6 41 78.0
SEGI_20820 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 1.7e-08 64.7 38 89.5
SEGI_15408 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 5.3e-07 59.7 53 56.6
Gorai.012G092500 Gossypium raimondii HOM05D006587 ORTHO05D008487 2.6e-06 57.4 35 77.1


User provided reference genes

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