Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1175 Trochodendron aralioides HOM05D002407 ORTHO05D002476 6.2e-183 644.4 438 100.0
TAR362G1005 Trochodendron aralioides HOM05D002407 ORTHO05D002476 4.6e-69 266.2 550 47.6
TAR636G3152 Trochodendron aralioides HOM05D002407 ORTHO05D002476 1.3e-68 264.6 490 46.5
Nn4g26275 Nelumbo nucifera HOM05D002407 ORTHO05D002476 3.1e-65 253.4 428 58.6
Dinv44512 Davidia involucrata HOM05D002407 ORTHO05D002476 1.4e-54 218.0 526 45.2
Thecc.04G228600 Theobroma cacao HOM05D002407 ORTHO05D002476 7.1e-54 215.7 546 40.3
Nn1g02265 Nelumbo nucifera HOM05D002407 ORTHO05D002476 7.9e-53 212.2 457 49.7
MBI04_g44890_MAGBIO Magnolia biondii HOM05D002407 ORTHO05D002476 6.6e-52 209.1 453 43.3
Haze_00920 Corylus avellana HOM05D002407 ORTHO05D002476 3.1e-49 200.3 430 41.2
MD13G1190800 Malus domestica HOM05D002407 ORTHO05D002476 1.2e-48 198.4 457 43.8
Dinv38434 Davidia involucrata HOM05D002407 ORTHO05D002476 2.0e-48 197.6 537 39.1
TWI73G0052 Tripterygium wilfordii HOM05D002407 ORTHO05D002476 3.4e-48 196.8 442 41.0
Cpa.g.sc58.130 Carica papaya HOM05D002407 ORTHO05D002476 1.3e-47 194.9 559 42.0
Duzib151G0448 Durio zibethinus HOM05D002407 ORTHO05D002476 6.4e-47 192.6 544 36.8
Manes.15G026500 Manihot esculenta HOM05D002407 ORTHO05D002476 2.4e-46 190.7 527 42.9
Sabra10G0053600 Salix brachista HOM05D002407 ORTHO05D002476 7.1e-46 189.1 513 35.9
Manes.15G027400 Manihot esculenta HOM05D002407 ORTHO05D002476 6.0e-45 186.0 532 41.5
Potri.008G151200 Populus trichocarpa HOM05D002407 ORTHO05D002476 3.9e-44 183.3 492 47.2
TWI09G0219 Tripterygium wilfordii HOM05D002407 ORTHO05D002476 5.1e-44 183.0 428 41.4
Potri.010G089700 Populus trichocarpa HOM05D002407 ORTHO05D002476 2.5e-43 180.6 416 45.9
QL06p003139 Quercus lobata HOM05D002407 ORTHO05D002476 2.5e-43 180.6 560 35.5
TWI53G2093 Tripterygium wilfordii HOM05D002407 ORTHO05D002476 1.3e-42 178.3 428 38.6
Prupe.1G011200 Prunus persica HOM05D002407 ORTHO05D002476 4.8e-42 176.4 577 38.8
Aqoxy2G03363 Aquilegia oxysepala HOM05D002407 ORTHO05D002476 6.2e-42 176.0 470 43.8
Ciclev10004136m.g Citrus clementina HOM05D002407 ORTHO05D002476 6.9e-41 172.6 536 35.3
CiPaw.01G164400 Carya illinoinensis HOM05D002407 ORTHO05D002476 9.0e-41 172.2 548 34.3
MD16G1191200 Malus domestica HOM05D002407 ORTHO05D002476 1.2e-40 171.8 394 43.1
Atru.chr4.2501 Acer truncatum HOM05D002407 ORTHO05D002476 1.5e-40 171.4 422 37.7
Lalb_Chr05g0210931 Lupinus albus HOM05D002407 ORTHO05D002476 1.5e-40 171.4 491 36.9
Gohir.D10G151700 Gossypium hirsutum HOM05D002407 ORTHO05D002476 2.0e-40 171.0 525 35.0
TAR365G0329 Trochodendron aralioides HOM05D002407 ORTHO05D002476 5.8e-40 169.5 425 44.9
Duzib212G0865 Durio zibethinus HOM05D002407 ORTHO05D002476 7.6e-40 169.1 550 37.5
Cc03_g03560 Coffea canephora HOM05D002407 ORTHO05D002476 4.9e-39 166.4 563 33.2
Gorai.011G169000 Gossypium raimondii HOM05D002407 ORTHO05D002476 8.4e-39 165.6 526 34.2
Actinidia23483 Actinidia chinensis HOM05D002407 ORTHO05D002476 1.9e-38 164.5 549 40.4
Actinidia08503 Actinidia chinensis HOM05D002407 ORTHO05D002476 2.5e-38 164.1 420 37.4
Gohir.D09G217200 Gossypium hirsutum HOM05D002407 ORTHO05D002476 2.5e-38 164.1 520 33.8
MSTRG.4019 Avicennia marina HOM05D002407 ORTHO05D002476 5.5e-38 162.9 524 32.8
Gorai.006G237700 Gossypium raimondii HOM05D002407 ORTHO05D002476 5.5e-38 162.9 519 33.9
Lalb_Chr09g0319791 Lupinus albus HOM05D002407 ORTHO05D002476 1.6e-37 161.4 505 41.6
Gohir.A09G214700 Gossypium hirsutum HOM05D002407 ORTHO05D002476 2.1e-37 161.0 521 33.8
COL.COLO4_10231 Corchorus olitorius HOM05D002407 ORTHO05D002476 1.3e-36 158.3 556 37.8
Gohir.A10G117100 Gossypium hirsutum HOM05D002407 ORTHO05D002476 3.9e-36 156.8 530 36.0
arahy.Tifrunner.gnm1.ann1.C339P9 Arachis hypogaea HOM05D002407 ORTHO05D002476 5.1e-36 156.4 514 40.7
Eucgr.H03537 Eucalyptus grandis HOM05D002407 ORTHO05D002476 1.1e-35 155.2 379 43.3
Psat6g208200 Pisum sativum HOM05D002407 ORTHO05D002476 1.5e-35 154.8 521 43.2
Lj5g0016334 Lotus japonicus HOM05D002407 ORTHO05D002476 2.5e-35 154.1 527 41.7
Duzib052G1002 Durio zibethinus HOM05D002407 ORTHO05D002476 2.1e-34 151.0 535 38.9
Phvul.007G055400 Phaseolus vulgaris HOM05D002407 ORTHO05D002476 4.8e-34 149.8 518 38.6
Hund12142 Selenicereus undatus HOM05D002407 ORTHO05D002476 2.4e-33 147.5 556 36.3
Thecc.01G277700 Theobroma cacao HOM05D002407 ORTHO05D002476 4.5e-32 143.3 355 45.9
Sabra08G0115000 Salix brachista HOM05D002407 ORTHO05D002476 1.7e-31 141.4 539 37.7
Sed0021914 Sechium edule HOM05D002407 ORTHO05D002476 2.2e-31 141.0 432 40.0
AUR62038105 Chenopodium quinoa HOM05D002407 ORTHO05D002476 5.0e-31 139.8 507 33.9
PSO832G2586 Papaver somniferum HOM05D002407 ORTHO05D002476 5.0e-31 139.8 494 41.9
Sopen09g030650 Solanum pennellii HOM05D002407 ORTHO05D002476 1.1e-30 138.7 390 42.8
CsaV3_6G038190 Cucumis sativus L. HOM05D002407 ORTHO05D002476 3.2e-30 137.1 370 44.9
Glyma.10G249300 Glycine max HOM05D002407 ORTHO05D002476 9.3e-30 135.6 445 45.8
DCAR_027191 Daucus carota HOM05D002407 ORTHO05D002476 1.6e-29 134.8 492 33.9
PGSC0003DMG400031808 Solanum tuberosum HOM05D002407 ORTHO05D002476 2.7e-29 134.0 393 43.3
Ca_10916_v3 Cicer arietinum L. HOM05D002407 ORTHO05D002476 4.6e-29 133.3 529 40.5
MELO3C014484.2 Cucumis melo HOM05D002407 ORTHO05D002476 7.9e-29 132.5 370 44.6
Glyma.20G144400 Glycine max HOM05D002407 ORTHO05D002476 3.9e-28 130.2 428 46.3
Oeu041218.1 Olea europaea HOM05D002407 ORTHO05D002476 5.1e-28 129.8 363 38.3
TPR.G5532 Trifolium pratense HOM05D002407 ORTHO05D002476 1.5e-27 128.3 527 38.1
MSTRG.21848 Avicennia marina HOM05D002407 ORTHO05D002476 1.9e-27 127.9 424 31.4
Potri.002G052300 Populus trichocarpa HOM05D002407 ORTHO05D002476 1.9e-27 127.9 351 35.6
Solyc09g075830.3 Solanum lycopersicum HOM05D002407 ORTHO05D002476 2.5e-27 127.5 389 41.9
Actinidia36974 Actinidia chinensis HOM05D002407 ORTHO05D002476 3.3e-27 127.1 402 39.8
FvH4_4g15230 Fragaria vesca HOM05D002407 ORTHO05D002476 5.7e-27 126.3 483 42.7
Duzib138G1894 Durio zibethinus HOM05D002407 ORTHO05D002476 9.7e-27 125.6 339 39.5
FAN12G3852 Fragaria x ananassa HOM05D002407 ORTHO05D002476 2.8e-26 124.0 479 42.6
FAN07G2387 Fragaria x ananassa HOM05D002407 ORTHO05D002476 3.7e-26 123.6 489 38.7
PSO210G7189 Papaver somniferum HOM05D002407 ORTHO05D002476 4.8e-26 123.2 472 40.9
CiPaw.02G096000 Carya illinoinensis HOM05D002407 ORTHO05D002476 1.1e-25 122.1 421 34.2
PGR004G2462 Punica granatum HOM05D002407 ORTHO05D002476 3.1e-25 120.6 427 37.7
Sed0008106 Sechium edule HOM05D002407 ORTHO05D002476 4.1e-25 120.2 402 43.0
Duzib211G0657 Durio zibethinus HOM05D002407 ORTHO05D002476 5.3e-25 119.8 341 35.5
Actinidia36977 Actinidia chinensis HOM05D002407 ORTHO05D002476 1.5e-24 118.2 372 36.3
Duzib133G0624 Durio zibethinus HOM05D002407 ORTHO05D002476 2.0e-24 117.9 348 42.2
Potri.005G210200 Populus trichocarpa HOM05D002407 ORTHO05D002476 2.0e-24 117.9 345 34.8
CAN.G907.19 Capsicum annuum HOM05D002407 ORTHO05D002476 1.0e-23 115.5 381 45.1
Sabra02G0042400 Salix brachista HOM05D002407 ORTHO05D002476 1.0e-23 115.5 349 34.1
VMungo0720G1158 Vigna mungo HOM05D002407 ORTHO05D002476 2.2e-23 114.4 516 36.2
Lj6C594G25 Lonicera japonica HOM05D002407 ORTHO05D002476 3.8e-23 113.6 348 36.2
QL12p021604 Quercus lobata HOM05D002407 ORTHO05D002476 5.0e-23 113.2 356 41.0
COL.COLO4_09085 Corchorus olitorius HOM05D002407 ORTHO05D002476 8.5e-23 112.5 358 38.5
Gohir.D12G004400 Gossypium hirsutum HOM05D002407 ORTHO05D002476 1.1e-22 112.1 287 43.9
Gorai.008G004200 Gossypium raimondii HOM05D002407 ORTHO05D002476 1.1e-22 112.1 287 44.3
MSTRG.24745 Avicennia marina HOM05D002407 ORTHO05D002476 1.9e-22 111.3 509 29.5
Sc13g0004300 Simmondsia chinensis HOM05D002407 ORTHO05D002476 2.5e-22 110.9 533 33.4
Ah.13g073870 Amaranthus hybridus HOM05D002407 ORTHO05D002476 5.5e-22 109.8 545 31.6
AUR62038630 Chenopodium quinoa HOM05D002407 ORTHO05D002476 5.5e-22 109.8 500 30.2
Sabra05G0160300 Salix brachista HOM05D002407 ORTHO05D002476 1.2e-21 108.6 343 33.5
SGA_v2.0_scaffold39G15271 Striga asiatica HOM05D002407 ORTHO05D002476 1.6e-21 108.2 498 32.5
arahy.Tifrunner.gnm1.ann1.GGU5D9 Arachis hypogaea HOM05D002407 ORTHO05D002476 6.1e-21 106.3 512 36.3
FAN17G1063 Fragaria x ananassa HOM05D002407 ORTHO05D002476 1.0e-20 105.5 591 34.3
RcHm_v2.0_Chr4g0416621 Rosa chinensis HOM05D002407 ORTHO05D002476 1.4e-20 105.1 413 41.4
Peaxi162Scf00437g00026 Petunia axillaris HOM05D002407 ORTHO05D002476 2.3e-20 104.4 552 36.4
FAN22G1385 Fragaria x ananassa HOM05D002407 ORTHO05D002476 3.0e-20 104.0 489 35.2
Gohir.A12G004700 Gossypium hirsutum HOM05D002407 ORTHO05D002476 3.0e-20 104.0 287 33.8
Atru.chr5.1448 Acer truncatum HOM05D002407 ORTHO05D002476 5.1e-20 103.2 344 41.9
Medtr1g104710 Medicago truncatula HOM05D002407 ORTHO05D002476 8.8e-20 102.4 291 39.9
THA.LOC104808535 Tarenaya hassleriana HOM05D002407 ORTHO05D002476 3.3e-19 100.5 335 46.3
Nitab4.5_0007048g0010 Nicotiana tabacum HOM05D002407 ORTHO05D002476 5.7e-19 99.8 443 32.5
Actinidia40180 Actinidia chinensis HOM05D002407 ORTHO05D002476 7.4e-19 99.4 449 37.0
Prupe.8G240200 Prunus persica HOM05D002407 ORTHO05D002476 7.4e-19 99.4 281 34.2
Migut.N00175 Erythranthe guttata HOM05D002407 ORTHO05D002476 2.8e-18 97.4 490 31.6
Rhsim02G0022900 Rhododendron simsii HOM05D002407 ORTHO05D002476 3.7e-18 97.1 501 36.1
Sc25g0004400 Simmondsia chinensis HOM05D002407 ORTHO05D002476 3.7e-18 97.1 390 40.3
Cfa006148 Carpinus fangiana HOM05D002407 ORTHO05D002476 4.8e-18 96.7 339 43.1
CSS0005054 Camellia sinensis var. sinensis HOM05D002407 ORTHO05D002476 8.2e-18 95.9 528 34.3
Haze_04701 Corylus avellana HOM05D002407 ORTHO05D002476 1.1e-17 95.5 339 44.0
GSVIVG01001149001 Vitis vinifera HOM05D002407 ORTHO05D002476 2.4e-17 94.4 305 33.8
DCAR_027192 Daucus carota HOM05D002407 ORTHO05D002476 3.1e-17 94.0 137 46.0
Hma1.2p1_3606F.1_g337000 Hydrangea macrophylla HOM05D002407 ORTHO05D002476 1.5e-16 91.7 128 44.5
Aa31LG8G8910 Aethionema arabicum HOM05D002407 ORTHO05D002476 2.0e-16 91.3 417 38.6
Lsat_1_v5_gn_5_148881 Lactuca sativa HOM05D002407 ORTHO05D002476 5.9e-16 89.7 312 47.4
THA.LOC104803022 Tarenaya hassleriana HOM05D002407 ORTHO05D002476 3.8e-15 87.0 373 37.8
CDE10G0571 Ceratophyllum demersum HOM05D002407 ORTHO05D002476 6.5e-15 86.3 401 28.9
TAR365G0901 Trochodendron aralioides HOM05D002407 ORTHO05D002476 1.1e-14 85.5 75 66.7
AL3G36660 Arabidopsis lyrata HOM05D002407 ORTHO05D002476 1.9e-14 84.7 554 30.3
ClCG06G006080 Citrullus lanatus HOM05D002407 ORTHO05D002476 1.9e-14 84.7 142 43.7
HPP92_006103 Vanilla planifolia HOM05D002407 ORTHO05D002476 3.2e-14 84.0 409 30.3
Potri.003G029500 Populus trichocarpa HOM05D002407 ORTHO05D002476 4.2e-14 83.6 140 44.3
HanXRQChr04g0111801 Helianthus annuus HOM05D002407 ORTHO05D002476 7.2e-14 82.8 410 35.4
Lj1g0011785 Lotus japonicus HOM05D002407 ORTHO05D002476 1.6e-13 81.6 347 30.3
AT3G22380 Arabidopsis thaliana HOM05D002407 ORTHO05D002476 2.1e-13 81.3 352 31.2
arahy.Tifrunner.gnm1.ann1.5R3DYZ Arachis hypogaea HOM05D002407 ORTHO05D002476 2.1e-13 81.3 350 28.9
Carub.0007s2714 Capsella rubella HOM05D002407 ORTHO05D002476 2.7e-13 80.9 385 32.5
Lj6A599G41 Lonicera japonica HOM05D002407 ORTHO05D002476 7.9e-13 79.3 283 32.5
Ciclev10018523m.g Citrus clementina HOM05D002407 ORTHO05D002476 1.0e-12 79.0 351 36.8
Lalb_Chr02g0142731 Lupinus albus HOM05D002407 ORTHO05D002476 1.8e-12 78.2 272 31.2
Phvul.001G151600 Phaseolus vulgaris HOM05D002407 ORTHO05D002476 2.3e-12 77.8 349 27.2
arahy.Tifrunner.gnm1.ann1.Q6BK6L Arachis hypogaea HOM05D002407 ORTHO05D002476 3.9e-12 77.0 348 27.9
Thhalv10019888m.g Eutrema salsugineum HOM05D002407 ORTHO05D002476 6.7e-12 76.3 554 27.1
A05p26430 Brassica napus HOM05D002407 ORTHO05D002476 8.8e-12 75.9 350 28.6
BraA05t21516Z Brassica rapa HOM05D002407 ORTHO05D002476 8.8e-12 75.9 350 28.6
Nitab4.5_0000795g0080 Nicotiana tabacum HOM05D002407 ORTHO05D002476 8.8e-12 75.9 467 29.6
Carub.0003s2254 Capsella rubella HOM05D002407 ORTHO05D002476 3.3e-11 73.9 560 26.1
Glyma.02G146900 Glycine max HOM05D002407 ORTHO05D002476 4.4e-11 73.6 350 28.6
Glyma.10G027000 Glycine max HOM05D002407 ORTHO05D002476 4.4e-11 73.6 350 27.7
AL7G40870 Arabidopsis lyrata HOM05D002407 ORTHO05D002476 5.7e-11 73.2 316 30.7
Ca_09753_v3 Cicer arietinum L. HOM05D002407 ORTHO05D002476 5.7e-11 73.2 334 27.8
A01p32710 Brassica napus HOM05D002407 ORTHO05D002476 2.2e-10 71.2 351 36.5
BraA01t03399Z Brassica rapa HOM05D002407 ORTHO05D002476 2.2e-10 71.2 351 36.5
CDE10G0467 Ceratophyllum demersum HOM05D002407 ORTHO05D002476 4.8e-10 70.1 397 28.2
HanXRQChr04g0111791 Helianthus annuus HOM05D002407 ORTHO05D002476 6.3e-10 69.7 403 33.7
SHI00424 Sapria himalayana HOM05D002407 ORTHO05D002476 6.3e-10 69.7 418 26.1
MD03G1263800 Malus domestica HOM05D002407 ORTHO05D002476 8.2e-10 69.3 260 29.2
Phvul.007G172500 Phaseolus vulgaris HOM05D002407 ORTHO05D002476 8.2e-10 69.3 312 28.2
VMungo1383G3670 Vigna mungo HOM05D002407 ORTHO05D002476 8.2e-10 69.3 349 26.6
C01p41910 Brassica napus HOM05D002407 ORTHO05D002476 1.1e-09 68.9 352 28.4
THA.LOC104822274 Tarenaya hassleriana HOM05D002407 ORTHO05D002476 1.1e-09 68.9 424 36.3
Lj5g0016690 Lotus japonicus HOM05D002407 ORTHO05D002476 5.3e-09 66.6 271 27.7
BcaB06g26339 Brassica carinata HOM05D002407 ORTHO05D002476 1.2e-08 65.5 359 33.4
Sp3g20150 Schrenkiella parvula HOM05D002407 ORTHO05D002476 1.2e-08 65.5 350 30.0
arahy.Tifrunner.gnm1.ann1.DHG9YX Arachis hypogaea HOM05D002407 ORTHO05D002476 2.0e-08 64.7 359 26.5
arahy.Tifrunner.gnm1.ann1.ZKNE4R Arachis hypogaea HOM05D002407 ORTHO05D002476 2.0e-08 64.7 355 27.6
BcaC05g28079 Brassica carinata HOM05D002407 ORTHO05D002476 4.5e-08 63.5 350 26.9
C05p41010 Brassica napus HOM05D002407 ORTHO05D002476 4.5e-08 63.5 350 26.9
BolC5t32844H Brassica oleracea HOM05D002407 ORTHO05D002476 4.5e-08 63.5 350 26.9
BcaC09g49170 Brassica carinata HOM05D002407 ORTHO05D002476 5.9e-08 63.2 355 35.2
BolC1t04147H Brassica oleracea HOM05D002407 ORTHO05D002476 5.9e-08 63.2 355 35.2
MD11G1284500 Malus domestica HOM05D002407 ORTHO05D002476 5.9e-08 63.2 273 30.4
VMungo0720G2301 Vigna mungo HOM05D002407 ORTHO05D002476 5.9e-08 63.2 349 28.1
ATR0332G080 Amborella trichopoda HOM05D002407 ORTHO05D002476 7.7e-08 62.8 436 33.5
ClCG09G007080 Citrullus lanatus HOM05D002407 ORTHO05D002476 1.3e-07 62.0 351 28.5
Psat6g060680 Pisum sativum HOM05D002407 ORTHO05D002476 1.3e-07 62.0 343 33.5
TPR.G9122 Trifolium pratense HOM05D002407 ORTHO05D002476 1.3e-07 62.0 56 58.9
Cpa.g.sc52.41 Carica papaya HOM05D002407 ORTHO05D002476 1.1e-06 58.9 77 49.4
SalBow2G0563 Salvia bowleyana HOM05D002407 ORTHO05D002476 1.1e-06 58.9 470 26.8
vmacro15329 Vaccinium macrocarpon HOM05D002407 ORTHO05D002476 3.2e-06 57.4 98 42.9
HPP92_024476 Vanilla planifolia HOM05D002407 ORTHO05D002476 3.2e-06 57.4 468 29.3
Ah.13g073860 Amaranthus hybridus HOM05D002407 ORTHO05D002476 5.5e-06 56.6 246 30.9
MELO3C015830.2 Cucumis melo HOM05D002407 ORTHO05D002476 5.5e-06 56.6 313 34.8
A03p42740 Brassica napus HOM05D002407 ORTHO05D002476 9.4e-06 55.8 364 27.5
BraA03t13421Z Brassica rapa HOM05D002407 ORTHO05D002476 9.4e-06 55.8 364 27.5
unitig_32.g10811 Utricularia gibba HOM05D002407 ORTHO05D002476 9.4e-06 55.8 299 29.4


User provided reference genes

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