Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1044 Trochodendron aralioides HOM05D001451 ORTHO05D415995 1.8e-108 396.0 205 100.0
TAR374G0339 Trochodendron aralioides HOM05D001451 ORTHO05D001338 4.1e-12 75.9 42 88.1
Haze_08803 Corylus avellana HOM05D001451 ORTHO05D001338 6.6e-10 68.6 40 80.0
Cfa012208 Carpinus fangiana HOM05D001451 ORTHO05D001338 1.9e-09 67.0 42 73.8
ClCG01G002550 Citrullus lanatus HOM05D001451 ORTHO05D001338 4.3e-09 65.9 42 73.8
Nitab4.5_0000583g0240 Nicotiana tabacum HOM05D001451 ORTHO05D001338 5.6e-09 65.5 40 72.5
Nitab4.5_0006018g0060 Nicotiana tabacum HOM05D001451 ORTHO05D001338 5.6e-09 65.5 40 72.5
Thecc.01G357100 Theobroma cacao HOM05D001451 ORTHO05D001338 5.6e-09 65.5 42 73.8
GSVIVG01019387001 Vitis vinifera HOM05D001451 ORTHO05D001338 5.6e-09 65.5 42 73.8
Dinv43835 Davidia involucrata HOM05D001451 ORTHO05D001338 7.3e-09 65.1 40 77.5
Duzib138G0752 Durio zibethinus HOM05D001451 ORTHO05D001338 7.3e-09 65.1 42 71.4
Lalb_Chr10g0096841 Lupinus albus HOM05D001451 ORTHO05D001338 7.3e-09 65.1 42 73.8
Actinidia20891 Actinidia chinensis HOM05D001451 ORTHO05D001338 9.5e-09 64.7 40 75.0
MBI17_g31748_MAGBIO Magnolia biondii HOM05D001451 ORTHO05D001338 9.5e-09 64.7 40 77.5
Sed0001948 Sechium edule HOM05D001451 ORTHO05D001338 9.5e-09 64.7 42 71.4
CSS0033688 Camellia sinensis var. sinensis HOM05D001451 ORTHO05D001338 1.2e-08 64.3 42 73.8
CSS0049469 Camellia sinensis var. sinensis HOM05D001451 ORTHO05D001338 1.2e-08 64.3 42 73.8
MELO3C005691.2 Cucumis melo HOM05D001451 ORTHO05D001338 1.2e-08 64.3 42 71.4
CsaV3_5G002660 Cucumis sativus L. HOM05D001451 ORTHO05D001338 1.2e-08 64.3 42 71.4
Rhsim07G0013400 Rhododendron simsii HOM05D001451 ORTHO05D001338 2.1e-08 63.5 39 74.4
Nitab4.5_0000386g0030 Nicotiana tabacum HOM05D001451 ORTHO05D001338 2.8e-08 63.2 40 70.0
Lj7A510T38 Lonicera japonica HOM05D001451 ORTHO05D001338 3.6e-08 62.8 39 74.4
Peaxi162Scf00008g02524 Petunia axillaris HOM05D001451 ORTHO05D001338 3.6e-08 62.8 40 72.5
Peaxi162Scf00020g00088 Petunia axillaris HOM05D001451 ORTHO05D001338 3.6e-08 62.8 40 67.5
Phvul.010G100200 Phaseolus vulgaris HOM05D001451 ORTHO05D001338 4.7e-08 62.4 42 71.4
Solyc10g012240.3 Solanum lycopersicum HOM05D001451 ORTHO05D001338 4.7e-08 62.4 40 67.5
PGSC0003DMG400019395 Solanum tuberosum HOM05D001451 ORTHO05D001338 4.7e-08 62.4 40 67.5
TWI60G0570 Tripterygium wilfordii HOM05D001451 ORTHO05D001338 4.7e-08 62.4 42 69.0
Glyma.07G069300 Glycine max HOM05D001451 ORTHO05D001338 6.1e-08 62.0 42 71.4
Glyma.16G035000 Glycine max HOM05D001451 ORTHO05D001338 6.1e-08 62.0 42 71.4
Potri.001G101900 Populus trichocarpa HOM05D001451 ORTHO05D001338 6.1e-08 62.0 42 69.0
Potri.003G129700 Populus trichocarpa HOM05D001451 ORTHO05D001338 6.1e-08 62.0 42 69.0
PGR031G3035 Punica granatum HOM05D001451 ORTHO05D001338 6.1e-08 62.0 42 71.4
CAN.G78.95 Capsicum annuum HOM05D001451 ORTHO05D001338 8.0e-08 61.6 40 67.5
Cc02_g38220 Coffea canephora HOM05D001451 ORTHO05D001338 8.0e-08 61.6 40 70.0
QL12p032511 Quercus lobata HOM05D001451 ORTHO05D001338 8.0e-08 61.6 41 68.3
Lalb_Chr23g0274741 Lupinus albus HOM05D001451 ORTHO05D001338 1.0e-07 61.2 40 72.5
MD14G1108100 Malus domestica HOM05D001451 ORTHO05D001338 1.0e-07 61.2 40 70.0
Nn1g01576 Nelumbo nucifera HOM05D001451 ORTHO05D001338 1.0e-07 61.2 40 75.0
Potri.002G161000 Populus trichocarpa HOM05D001451 ORTHO05D001338 1.0e-07 61.2 42 66.7
Oeu019181.2 Olea europaea HOM05D001451 ORTHO05D001338 1.4e-07 60.8 50 62.0
Lsat_1_v5_gn_3_6320 Lactuca sativa HOM05D001451 ORTHO05D001338 1.8e-07 60.5 42 69.0
Sopen10g006000 Solanum pennellii HOM05D001451 ORTHO05D001338 1.8e-07 60.5 40 67.5
MSTRG.20844 Avicennia marina HOM05D001451 ORTHO05D001338 2.3e-07 60.1 39 69.2
CiPaw.02G032500 Carya illinoinensis HOM05D001451 ORTHO05D001338 2.3e-07 60.1 42 66.7
Phvul.008G060900 Phaseolus vulgaris HOM05D001451 ORTHO05D001338 2.3e-07 60.1 48 58.3
Hund27262 Selenicereus undatus HOM05D000052 ORTHO05D001338 2.3e-07 60.1 42 66.7
Cpa.g.sc214.12 Carica papaya HOM05D001451 ORTHO05D001338 3.0e-07 59.7 42 66.7
Glyma.09G257800 Glycine max HOM05D001451 ORTHO05D001338 3.0e-07 59.7 42 66.7
Glyma.18G234800 Glycine max HOM05D001451 ORTHO05D001338 3.0e-07 59.7 42 66.7
TAR375G0960 Trochodendron aralioides HOM05D000013 ORTHO05D000689 3.0e-07 59.7 43 72.1
Ca_23612_v3 Cicer arietinum L. HOM05D001451 ORTHO05D001338 4.0e-07 59.3 43 72.1
ECA246G2442 Erigeron canadensis HOM05D000773 ORTHO05D000588 4.0e-07 59.3 42 66.7
MD06G1086900 Malus domestica HOM05D001451 ORTHO05D001338 4.0e-07 59.3 42 64.3
Potri.014G086600 Populus trichocarpa HOM05D001451 ORTHO05D001338 4.0e-07 59.3 42 64.3
Solyc01g094810.3 Solanum lycopersicum HOM05D001451 ORTHO05D001338 4.0e-07 59.3 41 68.3
Sopen01g038580 Solanum pennellii HOM05D001451 ORTHO05D001338 4.0e-07 59.3 41 68.3
PGSC0003DMG400000177 Solanum tuberosum HOM05D001451 ORTHO05D001338 4.0e-07 59.3 41 68.3
SGA_v2.0_scaffold4G02297 Striga asiatica HOM05D001451 ORTHO05D001338 4.0e-07 59.3 42 61.9
CiPaw.11G133100 Carya illinoinensis HOM05D001451 ORTHO05D001338 5.2e-07 58.9 42 66.7
DCAR_008614 Daucus carota HOM05D001451 ORTHO05D001338 5.2e-07 58.9 41 63.4
ECA234G4668 Erigeron canadensis HOM05D001451 ORTHO05D001338 5.2e-07 58.9 41 65.9
Medtr8g028920 Medicago truncatula HOM05D001451 ORTHO05D001338 5.2e-07 58.9 44 70.5
Sabra01G0076900 Salix brachista HOM05D001451 ORTHO05D001338 5.2e-07 58.9 42 66.7
Oeu024653.3 Olea europaea HOM05D001451 ORTHO05D001338 6.8e-07 58.5 42 69.0
Sabra03G0092200 Salix brachista HOM05D001451 ORTHO05D001338 6.8e-07 58.5 39 69.2
QL04p053992 Quercus lobata HOM05D001451 ORTHO05D001338 8.9e-07 58.2 57 56.1
Sabra14G0062800 Salix brachista HOM05D001451 ORTHO05D001338 8.9e-07 58.2 38 68.4
Sc23g0002780 Simmondsia chinensis HOM05D001451 ORTHO05D001338 8.9e-07 58.2 42 64.3
Thecc.03G281600 Theobroma cacao HOM05D001451 ORTHO05D001338 8.9e-07 58.2 37 70.3
TPR.G16547 Trifolium pratense HOM05D001451 ORTHO05D001338 8.9e-07 58.2 45 66.7
HanXRQChr17g0533181 Helianthus annuus HOM05D001451 ORTHO05D001338 1.5e-06 57.4 43 69.8
HanXRQChr17g0562411 Helianthus annuus HOM05D001451 ORTHO05D001338 1.5e-06 57.4 41 63.4
Cc08_g14940 Coffea canephora HOM05D001451 ORTHO05D001338 2.6e-06 56.6 41 65.9
PGR042G2788 Punica granatum HOM05D001451 ORTHO05D001338 2.6e-06 56.6 40 75.0
Sabra02G0128000 Salix brachista HOM05D001451 ORTHO05D001338 2.6e-06 56.6 42 64.3
arahy.Tifrunner.gnm1.ann1.49YPH1 Arachis hypogaea HOM05D001451 ORTHO05D001338 3.4e-06 56.2 43 65.1
Haze_15528 Corylus avellana HOM05D001451 ORTHO05D001338 3.4e-06 56.2 43 62.8
SalBow3G1127 Salvia bowleyana HOM05D001451 ORTHO05D001338 3.4e-06 56.2 39 69.2
Ah.05g180460 Amaranthus hybridus HOM05D001451 ORTHO05D001338 4.4e-06 55.8 42 61.9
Nn6g33363 Nelumbo nucifera HOM05D001451 ORTHO05D001338 4.4e-06 55.8 40 65.0
Nitab4.5_0004114g0030 Nicotiana tabacum HOM05D001451 ORTHO05D001338 4.4e-06 55.8 42 64.3
Sed0002903 Sechium edule HOM05D001451 ORTHO05D001338 4.4e-06 55.8 42 66.7
vmacro20922 Vaccinium macrocarpon HOM05D001451 ORTHO05D001338 4.4e-06 55.8 37 67.6
EL10Ac1g00396 Beta vulgaris HOM05D001451 ORTHO05D001338 5.7e-06 55.5 42 59.5
COL.COLO4_12731 Corchorus olitorius HOM05D001451 ORTHO05D001338 5.7e-06 55.5 42 57.1
Duzib068G0826 Durio zibethinus HOM05D001451 ORTHO05D001338 5.7e-06 55.5 37 70.3
FvH4_7g14730 Fragaria vesca HOM05D001451 ORTHO05D001338 5.7e-06 55.5 42 61.9
FAN01G1730 Fragaria x ananassa HOM05D001451 ORTHO05D001338 5.7e-06 55.5 42 61.9
FAN03G0074 Fragaria x ananassa HOM05D001451 ORTHO05D001338 5.7e-06 55.5 42 61.9
FAN06G2342 Fragaria x ananassa HOM05D001451 ORTHO05D001338 5.7e-06 55.5 42 61.9
FAN06G4663 Fragaria x ananassa HOM05D001451 ORTHO05D001338 5.7e-06 55.5 42 61.9
FAN10G1153 Fragaria x ananassa HOM05D001451 ORTHO05D001338 5.7e-06 55.5 42 61.9
Prupe.2G173000 Prunus persica HOM05D001451 ORTHO05D001338 5.7e-06 55.5 42 59.5
arahy.Tifrunner.gnm1.ann1.WRY82H Arachis hypogaea HOM05D001451 ORTHO05D001338 7.5e-06 55.1 43 62.8
MSTRG.4848 Avicennia marina HOM05D001451 ORTHO05D001338 7.5e-06 55.1 39 64.1
CSS0007274 Camellia sinensis var. sinensis HOM05D001451 ORTHO05D001338 7.5e-06 55.1 42 71.4
Lsat_1_v5_gn_4_35780 Lactuca sativa HOM05D001451 ORTHO05D001338 7.5e-06 55.1 41 61.0
MBI17_g33789_MAGBIO Magnolia biondii HOM05D001451 ORTHO05D001338 7.5e-06 55.1 34 73.5
RcHm_v2.0_Chr1g0356681 Rosa chinensis HOM05D001451 ORTHO05D001338 7.5e-06 55.1 42 61.9
MSTRG.1856 Avicennia marina HOM05D001451 ORTHO05D001338 9.8e-06 54.7 42 64.3
Migut.N01813 Erythranthe guttata HOM05D001451 ORTHO05D001338 9.8e-06 54.7 39 64.1
Zm00001eb046980 Zea mays HOM05D001451 ORTHO05D001338 9.8e-06 54.7 39 64.1


User provided reference genes

Program Settings