Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0726 Trochodendron aralioides HOM05D000779 ORTHO05D000246 5.5e-71 270.8 129 100.0
TAR362G0303 Trochodendron aralioides HOM05D000779 ORTHO05D000246 7.5e-36 154.1 125 64.8
Nn3g21697 Nelumbo nucifera HOM05D000779 ORTHO05D000246 2.3e-32 142.5 125 60.0
Nn4g25593 Nelumbo nucifera HOM05D000779 ORTHO05D000246 1.5e-28 129.8 125 53.6
Nn2g11342 Nelumbo nucifera HOM05D000779 ORTHO05D000246 3.3e-23 112.1 125 48.0
CSS0019602 Camellia sinensis var. sinensis HOM05D000779 ORTHO05D000246 7.3e-23 110.9 128 49.2
Duzib177G0823 Durio zibethinus HOM05D000779 ORTHO05D000246 9.5e-23 110.5 134 49.3
Rhsim05G0126900 Rhododendron simsii HOM05D000779 ORTHO05D000246 2.8e-22 109.0 128 47.7
Duzib106G1268 Durio zibethinus HOM05D000779 ORTHO05D000246 8.0e-22 107.5 128 49.2
Thecc.05G323200 Theobroma cacao HOM05D000779 ORTHO05D000246 8.0e-22 107.5 136 46.3
Actinidia01680 Actinidia chinensis HOM05D000779 ORTHO05D000246 2.3e-21 105.9 126 47.6
CDE05G2442 Ceratophyllum demersum HOM05D000779 ORTHO05D000246 2.3e-21 105.9 136 44.9
Duzib128G1946 Durio zibethinus HOM05D000779 ORTHO05D000246 4.0e-21 105.1 134 45.5
CDE11G0101 Ceratophyllum demersum HOM05D000779 ORTHO05D000246 2.6e-20 102.4 136 43.4
Hma1.2p1_0052F.1_g030730 Hydrangea macrophylla HOM05D000779 ORTHO05D000246 2.6e-20 102.4 126 46.0
Manes.09G176900 Manihot esculenta HOM05D000779 ORTHO05D000246 7.5e-20 100.9 142 45.8
Gohir.A13G112100 Gossypium hirsutum HOM05D000779 ORTHO05D000246 6.4e-19 97.8 128 46.9
Gohir.D13G115100 Gossypium hirsutum HOM05D000779 ORTHO05D000246 2.4e-18 95.9 128 46.1
Gorai.013G129400 Gossypium raimondii HOM05D000779 ORTHO05D000246 2.4e-18 95.9 128 46.1
Hma1.2p1_0008F-1.1_g005590 Hydrangea macrophylla HOM05D000779 ORTHO05D000246 3.2e-18 95.5 125 44.8
Sabra13G0007200 Salix brachista HOM05D000779 ORTHO05D000246 4.1e-18 95.1 130 43.8
Manes.08G111000 Manihot esculenta HOM05D000779 ORTHO05D000246 5.4e-18 94.7 140 42.9
TWI56G1098 Tripterygium wilfordii HOM05D000779 ORTHO05D000246 7.0e-18 94.4 125 44.8
Potri.013G008600 Populus trichocarpa HOM05D000779 ORTHO05D000246 1.6e-17 93.2 130 43.8
Cfa006705 Carpinus fangiana HOM05D000779 ORTHO05D000246 2.0e-17 92.8 125 44.0
CiPaw.07G029800 Carya illinoinensis HOM05D000779 ORTHO05D000246 2.0e-17 92.8 123 43.1
QL03p008675 Quercus lobata HOM05D000779 ORTHO05D000246 5.9e-17 91.3 128 43.8
QL03p013737 Quercus lobata HOM05D000779 ORTHO05D000246 5.9e-17 91.3 128 43.8
Haze_04060 Corylus avellana HOM05D000779 ORTHO05D000246 3.9e-16 88.6 125 42.4
Gohir.A08G205600 Gossypium hirsutum HOM05D000779 ORTHO05D000246 3.9e-16 88.6 128 43.8
Gorai.004G236400 Gossypium raimondii HOM05D000779 ORTHO05D000246 3.9e-16 88.6 128 43.0
Gohir.D08G222600 Gossypium hirsutum HOM05D000779 ORTHO05D000246 5.0e-16 88.2 128 42.2
Gohir.A11G273500 Gossypium hirsutum HOM05D000779 ORTHO05D000246 8.6e-16 87.4 132 44.7
Gohir.D11G283600 Gossypium hirsutum HOM05D000779 ORTHO05D000246 1.9e-15 86.3 132 44.7
Gorai.007G306500 Gossypium raimondii HOM05D000779 ORTHO05D000246 1.9e-15 86.3 132 44.7
CSS0001653 Camellia sinensis var. sinensis HOM05D000779 ORTHO05D000246 7.3e-15 84.3 124 41.9
MELO3C004181.2 Cucumis melo HOM05D000779 ORTHO05D000246 2.8e-14 82.4 133 42.1
CsaV3_2G007120 Cucumis sativus L. HOM05D000779 ORTHO05D000246 2.8e-14 82.4 133 42.1
GSVIVG01031241001 Vitis vinifera HOM05D000779 ORTHO05D000246 6.2e-14 81.3 127 43.3
Glyma.03G231100 Glycine max HOM05D000779 ORTHO05D000246 2.3e-13 79.3 130 40.0
Actinidia01506 Actinidia chinensis HOM05D000779 ORTHO05D000246 3.1e-13 79.0 86 50.0
Lalb_Chr21g0310291 Lupinus albus HOM05D000779 ORTHO05D000246 3.1e-13 79.0 127 40.2
VMungo1383G0325 Vigna mungo HOM05D000779 ORTHO05D000246 3.1e-13 79.0 128 36.7
MBI18_g17314_MAGBIO Magnolia biondii HOM05D000779 ORTHO05D000246 6.8e-13 77.8 133 39.8
Potri.005G014200 Populus trichocarpa HOM05D000779 ORTHO05D000246 6.8e-13 77.8 131 37.4
ClCG02G014890 Citrullus lanatus HOM05D000779 ORTHO05D000246 8.9e-13 77.4 133 40.6
Cc02_g35050 Coffea canephora HOM05D000779 ORTHO05D000246 8.9e-13 77.4 128 39.1
VMungo0603G0001 Vigna mungo HOM05D000779 ORTHO05D000246 1.2e-12 77.0 135 37.0
Oeu000009.1 Olea europaea HOM05D000779 ORTHO05D000246 1.5e-12 76.6 124 39.5
PSO761G0318 Papaver somniferum HOM05D000779 ORTHO05D000246 1.5e-12 76.6 143 37.8
Sabra05G0022900 Salix brachista HOM05D000779 ORTHO05D000246 1.5e-12 76.6 131 36.6
PSO210G7828 Papaver somniferum HOM05D000779 ORTHO05D000246 2.6e-12 75.9 144 36.8
Sabra05G0022400 Salix brachista HOM05D006340 ORTHO05D007568 2.6e-12 75.9 131 36.6
Phvul.007G201400 Phaseolus vulgaris HOM05D000779 ORTHO05D000246 4.4e-12 75.1 126 38.1
Glyma.20G097500 Glycine max HOM05D000779 ORTHO05D000246 9.8e-12 73.9 132 38.6
Peaxi162Scf00673g00046 Petunia axillaris HOM05D000779 ORTHO05D000246 9.8e-12 73.9 128 41.4
Lj5g0001279 Lotus japonicus HOM05D000779 ORTHO05D000246 1.7e-11 73.2 126 37.3
Aqoxy2G02762 Aquilegia oxysepala HOM05D000779 ORTHO05D000246 2.2e-11 72.8 103 42.7
Eucgr.H03292 Eucalyptus grandis HOM05D000779 ORTHO05D000246 2.2e-11 72.8 132 35.6
Nitab4.5_0000368g0070 Nicotiana tabacum HOM05D000779 ORTHO05D000246 2.2e-11 72.8 126 38.1
Glyma.10G147000 Glycine max HOM05D000779 ORTHO05D000246 3.7e-11 72.0 129 36.4
Glyma.19G228300 Glycine max HOM05D000779 ORTHO05D000246 3.7e-11 72.0 131 36.6
Nitab4.5_0005883g0010 Nicotiana tabacum HOM05D000779 ORTHO05D000246 6.4e-11 71.2 126 37.3
RcHm_v2.0_Chr3g0457121 Rosa chinensis HOM05D000779 ORTHO05D000246 6.4e-11 71.2 142 40.1
Prupe.6G312900 Prunus persica HOM05D000779 ORTHO05D000246 1.1e-10 70.5 143 37.8
MSTRG.20377 Avicennia marina HOM05D000779 ORTHO05D000246 1.4e-10 70.1 76 48.7
Ciclev10001779m.g Citrus clementina HOM05D000779 ORTHO05D000246 1.4e-10 70.1 145 36.6
MSTRG.16410 Avicennia marina HOM05D000779 ORTHO05D000246 5.4e-10 68.2 103 40.8
Cpa.g.sc48.162 Carica papaya HOM05D000779 ORTHO05D000246 1.2e-09 67.0 130 35.4
Sed0005309 Sechium edule HOM05D000779 ORTHO05D000246 1.2e-09 67.0 94 41.5
Sed0005255 Sechium edule HOM05D000779 ORTHO05D000246 1.6e-09 66.6 91 44.0
FAN05G3674 Fragaria x ananassa HOM05D000779 ORTHO05D000246 2.0e-09 66.2 91 41.8
FAN02G0329 Fragaria x ananassa HOM05D000779 ORTHO05D000246 2.7e-09 65.9 133 36.1
FAN09G3880 Fragaria x ananassa HOM05D000779 ORTHO05D000246 2.7e-09 65.9 91 41.8
FAN14G2215 Fragaria x ananassa HOM05D000779 ORTHO05D000246 2.7e-09 65.9 140 35.0
Dinv24446 Davidia involucrata HOM05D000779 ORTHO05D000246 3.5e-09 65.5 92 43.5
Os01g0302500 Oryza sativa ssp. japonica HOM05D000779 ORTHO05D000246 3.5e-09 65.5 125 36.8
MD12G1205700 Malus domestica HOM05D000779 ORTHO05D000246 4.6e-09 65.1 91 44.0
Oeu016566.1 Olea europaea HOM05D000779 ORTHO05D000246 4.6e-09 65.1 83 45.8
FvH4_6g07460 Fragaria vesca HOM05D000779 ORTHO05D000246 7.8e-09 64.3 91 40.7
Psat0s1183g0080 Pisum sativum HOM05D000779 ORTHO05D000246 7.8e-09 64.3 139 33.1
Atru.chr2.198 Acer truncatum HOM05D000779 ORTHO05D000246 1.0e-08 63.9 105 36.2
Zm00001eb354880 Zea mays HOM05D000779 ORTHO05D000246 1.3e-08 63.5 124 34.7
Migut.B00961 Erythranthe guttata HOM05D000779 ORTHO05D000246 1.7e-08 63.2 75 48.0
Os05g0129700 Oryza sativa ssp. japonica HOM05D000779 ORTHO05D000246 3.0e-08 62.4 121 32.2
Phvul.001G224900 Phaseolus vulgaris HOM05D000779 ORTHO05D000246 3.0e-08 62.4 90 40.0
SalBow7G4052 Salvia bowleyana HOM05D000779 ORTHO05D000246 3.0e-08 62.4 86 40.7
HPP92_001240 Vanilla planifolia HOM05D000779 ORTHO05D000246 3.9e-08 62.0 121 34.7
ATR1152G076 Amborella trichopoda HOM05D000779 ORTHO05D000246 6.6e-08 61.2 84 39.3
Dinv15261 Davidia involucrata HOM05D000779 ORTHO05D000246 6.6e-08 61.2 123 34.1
Solyc01g100510.4 Solanum lycopersicum HOM05D000779 ORTHO05D000246 8.6e-08 60.8 75 44.0
CAN.G1076.7 Capsicum annuum HOM05D000779 ORTHO05D000246 1.1e-07 60.5 125 32.8
SGA_v2.0_scaffold53G19283 Striga asiatica HOM05D000779 ORTHO05D000246 1.1e-07 60.5 74 45.9
Zm00001eb130180 Zea mays HOM05D000779 ORTHO05D000246 1.1e-07 60.5 124 33.9
Ca_04591_v3 Cicer arietinum L. HOM05D000779 ORTHO05D000246 1.5e-07 60.1 136 28.7
MBI16_g05473_MAGBIO Magnolia biondii HOM05D000779 ORTHO05D000246 1.5e-07 60.1 152 30.9
Sopen01g044020 Solanum pennellii HOM05D000779 ORTHO05D000246 1.5e-07 60.1 73 45.2
Zm00001eb264910 Zea mays HOM05D000779 ORTHO05D000246 1.5e-07 60.1 126 33.3
Cfa009185 Carpinus fangiana HOM05D000779 ORTHO05D000246 1.9e-07 59.7 118 33.9
Ca_10173_v3 Cicer arietinum L. HOM05D000779 ORTHO05D000246 2.5e-07 59.3 75 44.0
PGR031G0683 Punica granatum HOM05D000779 ORTHO05D000246 2.5e-07 59.3 90 44.4
Actinidia27796 Actinidia chinensis HOM05D000779 ORTHO05D000246 3.3e-07 58.9 116 33.6
Ah.02g130120 Amaranthus hybridus HOM05D000779 ORTHO05D000246 3.3e-07 58.9 106 33.0
CiPaw.05G187200 Carya illinoinensis HOM05D000779 ORTHO05D000246 3.3e-07 58.9 150 30.0
Haze_12219 Corylus avellana HOM05D005748 ORTHO05D007123 3.3e-07 58.9 118 33.9
Medtr1g084060 Medicago truncatula HOM05D000779 ORTHO05D000246 5.6e-07 58.2 88 37.5
Medtr5g033720 Medicago truncatula HOM05D000779 ORTHO05D000246 5.6e-07 58.2 138 29.7
Manes.12G025600 Manihot esculenta HOM05D000779 ORTHO05D000246 7.3e-07 57.8 112 38.4
Dinv24818 Davidia involucrata HOM05D000779 ORTHO05D000246 9.5e-07 57.4 118 32.2
Thecc.02G255200 Theobroma cacao HOM05D000779 ORTHO05D000246 9.5e-07 57.4 118 33.1
VMungo0251G3462 Vigna mungo HOM05D000779 ORTHO05D000246 9.5e-07 57.4 148 29.1
Duzib268G1392 Durio zibethinus HOM05D000779 ORTHO05D000246 1.2e-06 57.0 77 40.3
Gorai.005G180500 Gossypium raimondii HOM05D000779 ORTHO05D000246 1.6e-06 56.6 77 42.9
MSTRG.13356 Avicennia marina HOM05D000779 ORTHO05D000246 2.1e-06 56.2 74 41.9
Glyma.08G284300 Glycine max HOM05D000779 ORTHO05D000246 2.1e-06 56.2 73 42.5
Actinidia08147 Actinidia chinensis HOM05D000779 ORTHO05D000246 2.8e-06 55.8 72 41.7
Duzib248G1681 Durio zibethinus HOM05D000779 ORTHO05D000246 2.8e-06 55.8 118 33.1
Gohir.D02G160400 Gossypium hirsutum HOM05D000779 ORTHO05D000246 2.8e-06 55.8 77 41.6
Gohir.D05G315000 Gossypium hirsutum HOM05D000779 ORTHO05D000246 2.8e-06 55.8 73 41.1
Phvul.003G062500 Phaseolus vulgaris HOM05D000779 ORTHO05D000246 2.8e-06 55.8 72 43.1
PGSC0003DMG400002769 Solanum tuberosum HOM05D000779 ORTHO05D000246 2.8e-06 55.8 75 41.3
Glyma.02G036900 Glycine max HOM05D000779 ORTHO05D000246 3.6e-06 55.5 75 38.7
Oeu022156.1 Olea europaea HOM05D000779 ORTHO05D000246 3.6e-06 55.5 113 34.5
QL03p059030 Quercus lobata HOM05D000779 ORTHO05D000246 3.6e-06 55.5 82 40.2
TPR.G2622 Trifolium pratense HOM05D000779 ORTHO05D000246 3.6e-06 55.5 80 38.8
Atru.chr11.2075 Acer truncatum HOM05D000779 ORTHO05D000246 4.7e-06 55.1 72 43.1
EL10Ac6g13714 Beta vulgaris HOM05D000779 ORTHO05D000246 4.7e-06 55.1 143 30.8
CSS0014431 Camellia sinensis var. sinensis HOM05D000779 ORTHO05D000246 4.7e-06 55.1 72 43.1
Glyma.18G141200 Glycine max HOM05D000779 ORTHO05D000246 4.7e-06 55.1 72 41.7
Gorai.009G336900 Gossypium raimondii HOM05D000779 ORTHO05D000246 4.7e-06 55.1 73 41.1
Psat2g105840 Pisum sativum HOM05D000779 ORTHO05D000246 4.7e-06 55.1 136 27.2
Potri.008G188700 Populus trichocarpa HOM05D000779 ORTHO05D000246 4.7e-06 55.1 139 31.7
CiPaw.06G069700 Carya illinoinensis HOM05D000779 ORTHO05D000246 6.2e-06 54.7 72 41.7
Gohir.A03G137400 Gossypium hirsutum HOM05D000779 ORTHO05D000246 6.2e-06 54.7 77 40.3


User provided reference genes

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