Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 3557.3 1833 100.0
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 3129.0 1836 88.7
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2782.3 1843 79.2
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2706.8 1841 77.0
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2691.8 1848 76.8
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2678.3 1883 75.6
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 2666.7 1863 75.8
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2636.3 1857 74.8
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2625.9 1842 74.8
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2614.7 1841 74.4
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2609.7 1842 75.0
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2594.7 1845 74.2
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2593.5 1836 74.2
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2587.8 1842 74.5
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2580.4 1829 74.6
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2579.7 1845 73.9
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2575.4 1845 74.1
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2556.2 1842 73.9
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2548.1 1832 73.5
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2544.6 1826 73.8
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2541.1 1842 73.2
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2540.4 1854 73.1
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2537.3 1878 72.0
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2511.1 1842 72.4
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2500.7 1843 72.2
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2499.9 1843 72.3
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2497.2 1832 72.0
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2488.8 1828 72.2
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2483.8 1828 72.0
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2474.1 1824 72.6
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 2463.0 1846 70.4
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2451.4 1843 69.6
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2445.2 1809 71.6
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2444.1 1858 70.1
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2437.5 1851 70.8
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2430.2 1845 70.6
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2427.1 1838 69.2
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2423.7 1839 69.2
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2422.9 1841 68.9
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2422.1 1840 69.2
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2421.4 1836 69.5
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 2419.8 1903 67.8
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2419.4 1853 70.3
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2417.1 1918 67.6
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2414.4 1841 68.5
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2412.5 1853 70.1
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2409.8 1861 70.3
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2407.1 1851 70.4
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2397.5 1835 69.2
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2394.0 1843 70.3
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2392.8 1841 68.7
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2390.1 1843 69.9
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2386.7 1825 69.6
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2379.7 1842 68.6
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 2378.2 1840 68.8
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2369.7 1840 68.8
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2368.2 1844 69.0
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2365.9 1837 67.3
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2362.8 1845 67.9
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2360.5 1851 67.9
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2360.5 1851 67.9
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2303.5 1842 66.8
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2293.1 1844 67.2
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2286.5 1842 67.5
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2279.2 1845 66.7
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2278.4 1835 66.6
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2276.9 1851 66.1
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2267.3 1835 66.9
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 2251.9 1842 66.7
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2224.5 1836 65.6
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2214.1 1839 65.1
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 2207.6 1859 64.4
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 2207.2 1745 67.1
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 2183.3 1829 64.9
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 2174.1 1880 63.7
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 2141.7 1840 63.7
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2129.8 1842 63.8
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2116.3 1835 64.3
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2106.6 1838 62.6
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 2092.8 1837 62.7
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 2087.8 1838 62.9
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 2086.6 1837 62.4
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2085.8 1835 62.7
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 2083.5 1836 62.7
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2055.0 1845 62.0
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 2048.5 1834 62.2
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 2041.9 1838 61.1
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 2040.4 1778 62.9
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 2004.2 1838 61.9
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1962.6 1826 60.4
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1959.9 1831 60.2
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 1959.1 1831 60.2
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1948.7 1847 59.7
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1941.8 1829 59.5
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1905.2 1845 57.6
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1851.6 1842 56.1
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1777.3 1374 68.6
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1766.1 1710 58.3
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1710.3 1498 63.4
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1699.5 1222 73.4
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1662.9 1578 60.5
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1662.5 1810 53.6
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1628.6 1343 64.9
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1623.6 1333 64.9
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1562.7 1380 62.7
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1520.4 1308 62.6
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1481.5 1807 50.6
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1427.5 1195 63.3
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1399.0 1980 45.6
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1323.5 1396 56.0
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1274.6 1026 67.9
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1270.8 1859 43.7
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1254.2 1152 60.2
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1230.7 1011 65.5
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1223.8 1927 41.4
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1209.9 1939 40.7
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1185.6 1990 39.8
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 4.4e-307 1058.9 869 65.8
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 3.2e-265 919.8 1390 43.4
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 8.4e-250 868.6 1486 39.7
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 2.6e-243 847.0 630 69.5
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 3.2e-217 760.4 524 75.2
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 4.5e-203 713.4 488 75.2
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 1.7e-194 684.9 491 75.2
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 3.2e-188 664.1 609 59.3
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 7.0e-188 662.9 465 72.5
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 7.1e-164 583.2 383 80.2
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 1.0e-162 579.3 558 57.7
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 4.3e-161 573.9 633 52.6
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 5.6e-161 573.5 360 78.3
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 1.4e-159 568.9 338 87.6
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 2.2e-157 561.6 361 76.7
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 9.3e-156 556.2 423 65.5
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 5.1e-154 550.4 487 62.8
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 7.1e-140 503.4 396 70.5
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 3.3e-129 468.0 326 71.2
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 5.1e-122 444.1 425 61.4
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 1.0e-117 429.9 259 81.9
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 6.5e-117 427.2 397 57.7
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 3.7e-112 411.4 267 86.1
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 2.8e-75 288.9 308 55.5
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 3.6e-75 288.5 309 55.3
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 1.3e-72 280.0 313 55.3
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 4.0e-50 205.3 123 84.6
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 1.1e-47 197.2 143 68.5
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 1.4e-23 117.1 141 50.4
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 1.2e-22 114.0 70 87.1
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 9.6e-20 104.4 71 76.1
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 8.2e-19 101.3 575 22.4
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 1.5e-17 97.1 70 70.0
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 1.4e-15 90.5 66 69.7
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 5.5e-15 88.6 70 64.3
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 3.0e-13 82.8 204 28.4
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.9e-12 80.1 39 84.6
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 2.5e-12 79.7 101 51.5
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 3.3e-12 79.3 117 41.9
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 4.3e-12 79.0 84 50.0
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 9.7e-12 77.8 34 94.1
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 9.7e-12 77.8 34 94.1
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 9.7e-12 77.8 34 94.1
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 9.7e-12 77.8 34 94.1
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 9.7e-12 77.8 34 94.1
Nn3g17882 Nelumbo nucifera HOM05D004252 ORTHO05D005101 1.8e-10 73.6 76 60.5
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 1.1e-07 64.3 37 83.8
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 3.6e-06 59.3 192 29.2


User provided reference genes

Program Settings