Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 2.2e-151 538.9 264 100.0
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 1.9e-134 482.6 255 89.8
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 9.0e-121 437.2 257 80.5
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 7.7e-120 434.1 255 80.8
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 1.3e-119 433.3 261 80.1
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 2.2e-119 432.6 255 81.2
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 4.6e-117 424.9 256 80.5
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 6.1e-117 424.5 257 79.0
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 7.9e-117 424.1 256 80.9
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 1.0e-116 423.7 255 78.4
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 1.4e-116 423.3 268 75.7
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 3.3e-115 418.7 255 78.4
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 4.3e-115 418.3 257 76.7
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 9.7e-115 417.2 255 76.5
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 2.2e-114 416.0 257 77.4
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 4.8e-114 414.8 255 77.3
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 4.8e-114 414.8 257 77.0
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 8.2e-114 414.1 255 77.3
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 1.1e-113 413.7 256 76.2
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 1.4e-113 413.3 250 80.4
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 2.4e-113 412.5 255 76.1
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 6.9e-113 411.0 255 77.3
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 9.1e-113 410.6 255 77.3
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 3.4e-112 408.7 255 76.5
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 4.5e-112 408.3 255 76.9
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 4.5e-112 408.3 274 74.5
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 4.5e-112 408.3 256 76.6
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 1.7e-111 406.4 255 76.1
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 2.2e-111 406.0 255 76.1
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 8.5e-111 404.1 258 75.2
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 1.9e-110 402.9 257 74.7
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 5.5e-110 401.4 258 74.8
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 1.2e-109 400.2 254 76.4
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 1.2e-109 400.2 256 74.2
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.6e-109 399.8 255 74.1
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 2.1e-109 399.4 257 72.4
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 2.1e-109 399.4 318 64.5
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 2.7e-109 399.1 257 72.4
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 3.6e-109 398.7 258 72.9
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 6.1e-109 397.9 256 74.2
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 6.1e-109 397.9 255 72.5
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.0e-108 397.1 255 73.7
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 2.3e-108 396.0 259 73.7
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 3.0e-108 395.6 264 73.1
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 8.8e-108 394.0 257 74.3
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 3.3e-107 392.1 256 74.6
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 3.3e-107 392.1 253 72.7
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 4.4e-107 391.7 257 73.9
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 5.7e-107 391.3 261 72.8
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 2.8e-106 389.0 263 72.6
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 2.8e-106 389.0 255 74.1
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 3.7e-106 388.7 258 72.5
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 4.8e-106 388.3 264 72.3
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 1.1e-105 387.1 265 71.7
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 3.1e-105 385.6 259 70.7
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 5.3e-105 384.8 264 70.5
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 5.3e-105 384.8 256 72.7
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 7.0e-105 384.4 291 66.7
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 1.2e-104 383.6 272 69.9
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 2.6e-104 382.5 257 70.4
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 3.5e-104 382.1 257 72.0
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 4.5e-104 381.7 257 70.4
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 4.5e-104 381.7 257 72.4
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 5.9e-104 381.3 257 70.4
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 7.7e-104 380.9 257 71.2
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 1.7e-103 379.8 259 69.9
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 1.7e-103 379.8 259 70.3
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 2.9e-103 379.0 266 69.5
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 5.0e-103 378.3 261 69.3
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 1.1e-102 377.1 255 71.0
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.1e-102 377.1 259 68.7
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 1.5e-102 376.7 263 70.3
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 2.5e-102 375.9 256 73.0
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 3.2e-102 375.6 257 70.0
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 3.2e-102 375.6 255 68.2
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 5.5e-102 374.8 258 69.4
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 5.5e-102 374.8 255 70.2
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 7.2e-102 374.4 258 69.4
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 9.4e-102 374.0 253 70.8
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.2e-101 373.6 253 70.8
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 1.2e-101 373.6 255 69.8
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 1.2e-101 373.6 258 70.2
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.2e-101 373.6 258 70.2
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.6e-101 373.2 256 72.7
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 4.7e-101 371.7 261 69.7
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 6.1e-101 371.3 255 69.4
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 2.3e-100 369.4 255 70.2
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 2.3e-100 369.4 255 70.2
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 4.0e-100 368.6 259 69.1
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 6.7e-100 367.9 257 69.3
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 8.8e-100 367.5 272 64.7
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 8.8e-100 367.5 255 69.8
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 2.0e-99 366.3 255 69.8
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 2.6e-99 365.9 261 69.0
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 5.7e-99 364.8 217 79.3
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 9.7e-99 364.0 256 68.8
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 9.7e-99 364.0 255 71.4
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.8e-98 362.5 260 67.7
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 3.7e-98 362.1 258 69.0
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 3.7e-98 362.1 240 73.3
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 4.8e-98 361.7 263 68.4
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 6.3e-98 361.3 263 66.5
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.4e-97 360.1 259 67.2
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 3.1e-97 359.0 261 67.4
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 4.1e-97 358.6 256 68.8
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 4.1e-97 358.6 211 78.2
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 1.6e-96 356.7 255 67.1
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 4.5e-96 355.1 255 66.7
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 1.3e-95 353.6 254 70.1
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 2.9e-95 352.4 212 79.7
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 4.2e-94 348.6 254 68.5
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 1.4e-92 343.6 212 76.4
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 4.0e-92 342.0 236 71.2
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 8.8e-92 340.9 274 61.7
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 6.3e-90 334.7 196 81.6
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 4.1e-89 332.0 259 65.6
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.3e-87 327.0 212 71.2
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 2.2e-87 326.2 243 67.5
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 5.2e-84 315.1 211 70.6
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 2.0e-83 313.2 194 76.3
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 1.8e-81 306.6 227 67.0
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 5.9e-80 301.6 231 61.5
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 7.7e-80 301.2 230 61.3
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 7.7e-80 301.2 193 73.6
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.7e-79 300.1 194 72.7
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 2.3e-79 299.7 204 72.5
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 2.9e-79 299.3 192 75.5
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 5.6e-78 295.0 257 58.0
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 7.3e-78 294.7 310 53.2
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 1.6e-77 293.5 182 76.4
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 2.2e-74 283.1 169 81.1
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 1.1e-73 280.8 251 56.6
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.9e-70 270.0 359 44.8
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 1.2e-67 260.8 260 51.5
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 4.6e-64 248.8 182 66.5
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 9.5e-62 241.1 269 52.0
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 2.3e-60 236.5 220 56.8
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 2.0e-59 233.4 211 55.5
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.7e-56 223.0 233 50.2
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.9e-54 216.9 179 57.5
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 8.4e-50 201.4 178 56.7
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.4e-49 200.7 121 75.2
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 8.6e-47 191.4 126 70.6
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 9.6e-46 188.0 136 65.4
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 1.4e-44 184.1 147 61.9
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 1.5e-38 164.1 309 33.7
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 3.3e-38 162.9 248 36.3
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.6e-35 153.3 103 71.8
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 7.1e-33 145.2 173 45.7
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 2.7e-32 143.3 97 68.0
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 7.9e-32 141.7 126 54.8
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 1.5e-30 137.5 247 34.8
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 4.8e-29 132.5 170 49.4
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.1e-28 131.3 165 46.7
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 9.0e-28 128.3 98 63.3
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 2.4e-20 103.6 75 64.0
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.6e-19 100.1 119 46.2
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.3e-18 97.8 82 62.2
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 4.9e-18 95.9 57 71.9
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 2.1e-16 90.5 51 80.4
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 2.1e-16 90.5 51 80.4
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 4.3e-14 82.8 55 70.9
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 1.6e-08 64.3 56 55.4
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 2.1e-08 63.9 44 61.4
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 2.1e-08 63.9 44 61.4
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 6.1e-08 62.4 51 56.9
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 1.3e-07 61.2 36 75.0
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 6.7e-07 58.9 58 46.6


User provided reference genes

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