Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0355 Trochodendron aralioides HOM05D003223 ORTHO05D031189 1.1e-50 203.0 99 100.0
QL10p038436 Quercus lobata HOM05D003223 ORTHO05D004865 2.4e-26 122.1 69 88.4
CiPaw.15G184200 Carya illinoinensis HOM05D003223 ORTHO05D004865 1.2e-25 119.8 69 85.5
Haze_19344 Corylus avellana HOM05D003223 ORTHO05D004865 1.6e-25 119.4 69 85.5
Cfa020911 Carpinus fangiana HOM05D003223 ORTHO05D004865 2.7e-25 118.6 69 84.1
Sc09g0001160 Simmondsia chinensis HOM05D003223 ORTHO05D004865 2.7e-25 118.6 69 85.5
Atru.chr8.881 Acer truncatum HOM05D003223 ORTHO05D004865 3.5e-25 118.2 69 85.5
Lalb_Chr11g0068881 Lupinus albus HOM05D003223 ORTHO05D004865 3.5e-25 118.2 69 85.5
Solyc01g096830.3 Solanum lycopersicum HOM05D003223 ORTHO05D004865 3.5e-25 118.2 69 85.5
Sopen01g040540 Solanum pennellii HOM05D003223 ORTHO05D004865 3.5e-25 118.2 69 85.5
PGSC0003DMG400027506 Solanum tuberosum HOM05D003223 ORTHO05D004865 3.5e-25 118.2 69 85.5
Cpa.g.sc170.60 Carica papaya HOM05D003223 ORTHO05D004865 4.6e-25 117.9 69 84.1
Manes.17G018800 Manihot esculenta HOM05D003223 ORTHO05D004865 4.6e-25 117.9 69 82.6
Hund13720 Selenicereus undatus HOM05D003223 ORTHO05D004865 4.6e-25 117.9 69 82.6
CDE02G1396 Ceratophyllum demersum HOM05D003223 ORTHO05D004865 5.9e-25 117.5 69 82.6
Dinv18129 Davidia involucrata HOM05D003223 ORTHO05D004865 5.9e-25 117.5 69 84.1
Gohir.A13G115100 Gossypium hirsutum HOM05D003223 ORTHO05D004865 5.9e-25 117.5 69 84.1
Gohir.D13G118000 Gossypium hirsutum HOM05D003223 ORTHO05D004865 5.9e-25 117.5 69 84.1
Gorai.013G132500 Gossypium raimondii HOM05D003223 ORTHO05D004865 5.9e-25 117.5 69 84.1
Lj1g0018228 Lotus japonicus HOM05D003223 ORTHO05D004865 5.9e-25 117.5 69 85.5
Thecc.05G191900 Theobroma cacao HOM05D003223 ORTHO05D004865 5.9e-25 117.5 69 85.5
CANSAT54G2149 Cannabis sativa HOM05D003223 ORTHO05D004865 7.8e-25 117.1 69 85.5
CAN.G134.46 Capsicum annuum HOM05D003223 ORTHO05D004865 7.8e-25 117.1 69 85.5
Duzib177G0522 Durio zibethinus HOM05D003223 ORTHO05D004865 7.8e-25 117.1 69 84.1
Nitab4.5_0006602g0010 Nicotiana tabacum HOM05D003223 ORTHO05D004865 7.8e-25 117.1 69 84.1
TAR636G0043 Trochodendron aralioides HOM05D003223 ORTHO05D004865 7.8e-25 117.1 69 85.5
arahy.Tifrunner.gnm1.ann1.KDQ8ZI Arachis hypogaea HOM05D003223 ORTHO05D004865 1.0e-24 116.7 69 87.0
arahy.Tifrunner.gnm1.ann1.MF06QU Arachis hypogaea HOM05D003223 ORTHO05D004865 1.0e-24 116.7 69 87.0
COL.COLO4_04896 Corchorus olitorius HOM05D003223 ORTHO05D004865 1.0e-24 116.7 69 84.1
Eucgr.H05054 Eucalyptus grandis HOM05D003223 ORTHO05D004865 1.0e-24 116.7 69 81.2
Actinidia28935 Actinidia chinensis HOM05D003223 ORTHO05D004865 1.3e-24 116.3 69 84.1
Actinidia26635 Actinidia chinensis HOM05D003223 ORTHO05D004865 1.7e-24 115.9 69 84.1
Glyma.06G160800 Glycine max HOM05D003223 ORTHO05D004865 2.3e-24 115.5 69 84.1
Hma1.2p1_1945F.1_g308610 Hydrangea macrophylla HOM05D003223 ORTHO05D004865 2.3e-24 115.5 69 82.6
Hma1.2p1_1945F.1_g308620 Hydrangea macrophylla HOM05D003223 ORTHO05D004865 2.3e-24 115.5 69 82.6
Psat5g057040 Pisum sativum HOM05D003223 ORTHO05D004865 2.3e-24 115.5 69 85.5
SalBow7G2948 Salvia bowleyana HOM05D003223 ORTHO05D004865 2.3e-24 115.5 69 84.1
Nn3g20196 Nelumbo nucifera HOM05D003223 ORTHO05D004865 3.0e-24 115.2 69 82.6
Potri.T012200 Populus trichocarpa HOM05D003223 ORTHO05D004865 3.0e-24 115.2 69 79.7
Peaxi162Scf00647g00521 Petunia axillaris HOM05D003223 ORTHO05D004865 3.9e-24 114.8 69 82.6
GSVIVG01000234001 Vitis vinifera HOM05D003223 ORTHO05D004865 3.9e-24 114.8 69 79.7
Ciclev10018565m.g Citrus clementina HOM05D003223 ORTHO05D004865 5.0e-24 114.4 69 81.2
MELO3C004336.2 Cucumis melo HOM05D003223 ORTHO05D004865 5.0e-24 114.4 69 84.1
CsaV3_2G004550 Cucumis sativus L. HOM05D003223 ORTHO05D004865 5.0e-24 114.4 69 84.1
Glyma.04G204800 Glycine max HOM05D003223 ORTHO05D004865 5.0e-24 114.4 69 84.1
Lalb_Chr08g0237721 Lupinus albus HOM05D003223 ORTHO05D004865 5.0e-24 114.4 69 82.6
Phvul.009G158500 Phaseolus vulgaris HOM05D003223 ORTHO05D004865 5.0e-24 114.4 69 82.6
TWI31G0834 Tripterygium wilfordii HOM05D003223 ORTHO05D004865 5.0e-24 114.4 69 82.6
vmacro18729 Vaccinium macrocarpon HOM05D003223 ORTHO05D004865 5.0e-24 114.4 69 82.6
AUR62023309 Chenopodium quinoa HOM05D003223 ORTHO05D004865 6.6e-24 114.0 69 82.6
Ca_17035_v3 Cicer arietinum L. HOM05D003223 ORTHO05D004865 6.6e-24 114.0 69 84.1
Rhsim02G0071800 Rhododendron simsii HOM05D003223 ORTHO05D004865 6.6e-24 114.0 69 82.6
Potri.004G137100 Populus trichocarpa HOM05D003223 ORTHO05D004865 8.6e-24 113.6 69 81.2
SGA_v2.0_scaffold2G01007 Striga asiatica HOM05D003223 ORTHO05D004865 8.6e-24 113.6 69 81.2
MD08G1222500 Malus domestica HOM05D003223 ORTHO05D004865 1.1e-23 113.2 69 82.6
MD15G1415900 Malus domestica HOM05D003223 ORTHO05D004865 1.1e-23 113.2 69 82.6
PGR031G3736 Punica granatum HOM05D003223 ORTHO05D004865 1.5e-23 112.8 69 82.6
Sabra19G0001800 Salix brachista HOM05D003223 ORTHO05D004865 1.5e-23 112.8 69 79.7
Sabra19G0010900 Salix brachista HOM05D003223 ORTHO05D004865 1.5e-23 112.8 69 79.7
Dinv17906 Davidia involucrata HOM05D003223 ORTHO05D004865 1.9e-23 112.5 69 79.7
Medtr3g097560 Medicago truncatula HOM05D003223 ORTHO05D004865 1.9e-23 112.5 69 82.6
THA.LOC104800414 Tarenaya hassleriana HOM05D003223 ORTHO05D004865 1.9e-23 112.5 69 78.3
HPP92_022123 Vanilla planifolia HOM05D003223 ORTHO05D004865 1.9e-23 112.5 69 78.3
HPP92_022135 Vanilla planifolia HOM05D003223 ORTHO05D004865 1.9e-23 112.5 69 78.3
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 2.5e-23 112.1 69 79.7
AUR62008992 Chenopodium quinoa HOM05D003223 ORTHO05D004865 2.5e-23 112.1 69 81.2
ClCG02G016210 Citrullus lanatus HOM05D003223 ORTHO05D004865 2.5e-23 112.1 69 81.2
VMungo1127G0078 Vigna mungo HOM05D003223 ORTHO05D004865 2.5e-23 112.1 69 82.6
Cc11_g05040 Coffea canephora HOM05D003223 ORTHO05D004865 3.3e-23 111.7 69 79.7
Lj3A927G13 Lonicera japonica HOM05D003223 ORTHO05D004865 3.3e-23 111.7 69 79.7
SalBow4G1487 Salvia bowleyana HOM05D003223 ORTHO05D004865 3.3e-23 111.7 69 81.2
Sed0007652 Sechium edule HOM05D003223 ORTHO05D004865 3.3e-23 111.7 69 79.7
Oeu044063.4 Olea europaea HOM05D003223 ORTHO05D004865 4.3e-23 111.3 69 78.3
TPR.G7796 Trifolium pratense HOM05D003223 ORTHO05D004865 4.3e-23 111.3 69 81.2
Aa31LG11G3010 Aethionema arabicum HOM05D003223 ORTHO05D004865 5.6e-23 110.9 69 78.3
BcaC04g23507 Brassica carinata HOM05D003223 ORTHO05D004865 5.6e-23 110.9 69 76.8
A09p06850 Brassica napus HOM05D003223 ORTHO05D004865 5.6e-23 110.9 69 76.8
Prupe.1G560300 Prunus persica HOM05D003223 ORTHO05D004865 5.6e-23 110.9 69 79.7
DCAR_020438 Daucus carota HOM05D003223 ORTHO05D004865 7.3e-23 110.5 69 79.7
ECA232G4880 Erigeron canadensis HOM05D003223 ORTHO05D004865 7.3e-23 110.5 69 79.7
PSO339G5522 Papaver somniferum HOM05D003223 ORTHO05D004865 7.3e-23 110.5 69 79.7
Sed0001545 Sechium edule HOM05D003223 ORTHO05D004865 7.3e-23 110.5 69 79.7
Ah.04g166340 Amaranthus hybridus HOM05D002795 ORTHO05D004865 9.5e-23 110.2 69 78.3
FvH4_5g30560 Fragaria vesca HOM05D003223 ORTHO05D004865 9.5e-23 110.2 69 79.7
FAN08G3025 Fragaria x ananassa HOM05D003223 ORTHO05D004865 9.5e-23 110.2 69 79.7
FAN13G2597 Fragaria x ananassa HOM05D003223 ORTHO05D004865 9.5e-23 110.2 69 79.7
FAN18G2297 Fragaria x ananassa HOM05D003223 ORTHO05D004865 9.5e-23 110.2 69 79.7
PSO384G3388 Papaver somniferum HOM05D003223 ORTHO05D004865 9.5e-23 110.2 69 79.7
Migut.N00792 Erythranthe guttata HOM05D003223 ORTHO05D004865 1.2e-22 109.8 69 79.7
Lsat_1_v5_gn_4_179580 Lactuca sativa HOM05D003223 ORTHO05D004865 1.2e-22 109.8 69 76.8
Os05g0402800 Oryza sativa ssp. japonica HOM05D003223 ORTHO05D004865 1.2e-22 109.8 69 78.3
Zm00001eb349830 Zea mays HOM05D003223 ORTHO05D004865 1.2e-22 109.8 69 78.3
C09p07570 Brassica napus HOM05D003223 ORTHO05D004865 1.6e-22 109.4 69 75.4
Thhalv10003540m.g Eutrema salsugineum HOM05D003223 ORTHO05D004865 1.6e-22 109.4 69 75.4
Sp2g23580 Schrenkiella parvula HOM05D003223 ORTHO05D004865 1.6e-22 109.4 69 75.4
CARHR189920 Cardamine hirsuta HOM05D003223 ORTHO05D004865 2.1e-22 109.0 69 76.8
HanXRQChr09g0265231 Helianthus annuus HOM05D003223 ORTHO05D004865 2.1e-22 109.0 69 76.8
AL6G34910 Arabidopsis lyrata HOM05D003223 ORTHO05D004865 2.8e-22 108.6 69 75.4
AT5G23630 Arabidopsis thaliana HOM05D003223 ORTHO05D004865 2.8e-22 108.6 69 75.4
EL10Ac2g04575 Beta vulgaris HOM05D003223 ORTHO05D004865 2.8e-22 108.6 69 78.3
Aqoxy4G02048 Aquilegia oxysepala HOM05D003223 ORTHO05D004865 3.6e-22 108.2 69 75.4
BraA09t36331Z Brassica rapa HOM05D003223 ORTHO05D004865 4.7e-22 107.8 70 77.1
Carub.0006s2139 Capsella rubella HOM05D003223 ORTHO05D004865 4.7e-22 107.8 69 73.9
FAN04G0579 Fragaria x ananassa HOM05D003223 ORTHO05D004865 4.7e-22 107.8 69 76.8
MSTRG.8249 Avicennia marina HOM05D003223 ORTHO05D004865 6.2e-22 107.5 69 76.8
Zm00001eb287640 Zea mays HOM05D003223 ORTHO05D004865 8.0e-22 107.1 69 75.4
MSTRG.297 Avicennia marina HOM05D003223 ORTHO05D004865 1.4e-21 106.3 69 78.3
A02p40880 Brassica napus HOM05D003223 ORTHO05D004865 1.4e-21 106.3 69 72.5
DCAR_009034 Daucus carota HOM05D003223 ORTHO05D004865 1.4e-21 106.3 69 76.8
RcHm_v2.0_Chr7g0225451 Rosa chinensis HOM05D003223 ORTHO05D004865 1.8e-21 105.9 69 78.3
BcaC03g18022 Brassica carinata HOM05D003223 ORTHO05D004865 2.3e-21 105.5 69 71.0
C02p60780 Brassica napus HOM05D003223 ORTHO05D004865 2.3e-21 105.5 69 71.0
BolC2t12130H Brassica oleracea HOM05D003223 ORTHO05D004865 2.3e-21 105.5 69 71.0
Aqoxy5G02750 Aquilegia oxysepala HOM05D003223 ORTHO05D004865 6.8e-21 104.0 69 72.5
BraA02t09034Z Brassica rapa HOM05D003223 ORTHO05D004865 6.8e-21 104.0 70 72.9
SEGI_06157 Sequoiadendron giganteum HOM05D003223 ORTHO05D004865 1.2e-20 103.2 69 75.4
BcaB07g29887 Brassica carinata HOM05D003223 ORTHO05D004865 3.4e-20 101.7 69 69.6
CSS0030679 Camellia sinensis var. sinensis HOM05D003223 ORTHO05D004865 3.4e-20 101.7 86 64.0
Pp3c2_5380 Physcomitrium patens HOM05D003223 ORTHO05D004865 5.8e-20 100.9 69 73.9
BolC9t53674H Brassica oleracea HOM05D003223 ORTHO05D004865 2.4e-18 95.5 98 54.1
SMO276G0045 Selaginella moellendorffii HOM05D003223 ORTHO05D004865 3.2e-18 95.1 69 69.6
AagrBONN_evm.TU.Sc2ySwM_368.1511 Anthoceros agrestis HOM05D003223 ORTHO05D031189 5.4e-18 94.4 69 66.7
Mapoly0002s0327 Marchantia polymorpha HOM05D003223 ORTHO05D004865 5.4e-18 94.4 69 68.1
AagrBONN_evm.TU.Sc2ySwM_368.2673 Anthoceros agrestis HOM05D003223 ORTHO05D004865 1.6e-17 92.8 69 65.2
CBR_g48843 Chara braunii HOM05D003223 ORTHO05D004865 3.5e-17 91.7 69 63.8
AagrBONN_evm.TU.Sc2ySwM_368.601 Anthoceros agrestis HOM05D003223 ORTHO05D004865 2.1e-14 82.4 68 61.8
Thhalv10027626m.g Eutrema salsugineum HOM05D003223 ORTHO05D004865 3.6e-14 81.6 69 62.3
AagrBONN_evm.TU.Sc2ySwM_94.8 Anthoceros agrestis HOM05D003223 ORTHO05D004865 6.2e-14 80.9 68 60.3
AagrBONN_evm.TU.Sc2ySwM_368.3036 Anthoceros agrestis HOM05D003223 ORTHO05D004865 8.1e-14 80.5 92 48.9
Nitab4.5_0002687g0120 Nicotiana tabacum HOM05D003223 ORTHO05D004865 1.4e-13 79.7 44 88.6
vmacro06742 Vaccinium macrocarpon HOM05D003223 ORTHO05D004865 4.0e-13 78.2 152 37.5
Oeu024851.1 Olea europaea HOM05D003223 ORTHO05D004865 2.6e-12 75.5 43 81.4
Cre17.g744447 Chlamydomonas reinhardtii HOM05D003223 ORTHO05D004865 5.4e-10 67.8 70 48.6
Cfa027207 Carpinus fangiana HOM05D003223 ORTHO05D004865 1.2e-09 66.6 72 51.4
ECA238G2611 Erigeron canadensis HOM05D003223 ORTHO05D031189 1.6e-09 66.2 50 68.0


User provided reference genes

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